cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK100269     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0691100 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 35,843,513 -  35,845,387  ( + ) ;   1,875(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 35,843,513 -  35,843,796 ( + ) ;   284 (bp)
Exon 2 Location 35,843,873 -  35,844,394 ( + ) ;   522 (bp)
Exon 3 Location 35,844,478 -  35,844,576 ( + ) ;   99 (bp)
Exon 4 Location 35,844,658 -  35,845,387 ( + ) ;   730 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os04g0691100 Os04t0691100-01 211107 J023065E10 13714 LOC_Os04g59450.1 AK100269 3837 AP008210.2 255675107 BAF16270.1 113565927 NC_008397.2 297603645 NM_001060891.1 115461511 NP_001054356.1 115461512 Q7XKA8 SAPK5_ORYSJ
Os04g0691100 Os04t0691100-01 211107 J023065E10 13714 LOC_Os04g59450.2 AK100269 3837 AP008210.2 255675107 BAF16270.1 113565927 NC_008397.2 297603645 NM_001060891.1 115461511 NP_001054356.1 115461512 Q7XKA8 SAPK5_ORYSJ
Os04g0691100 Os04t0691100-01 211107 J023065E10 13714 LOC_Os04g59450.3 AK100269 3837 AP008210.2 255675107 BAF16270.1 113565927 NC_008397.2 297603645 NM_001060891.1 115461511 NP_001054356.1 115461512 Q7XKA8 SAPK5_ORYSJ


Chromosome: 4 ,  position: 35,843,513 - 35,845,387 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gtctgcaggt tatctgcgtc gtcgtctgtc atctcctcct catcttcttg ctctgctctg 
000061 cttctttcct ccagatactg ttcctcctgc agaagcagaa gcagaaggag aaggagaatt 
000121 gaaagcaaga aattaagtga gaggagaaga agaggaggta ggatatggag aaatacgagc 
000181 cagttcggga gatcggggcg ggcaacttcg gggtagcgaa gctgatgcgg aacaaggaga 
000241 cgcgggagct ggtggcgatg aagttcatcg agagagggaa cagggtaagc aagcaactat 
000301 tacttttgga atgatatatg aaaagaaaga aagaaatagc atgaaatgaa attggtgcag 
000361 atcgacgaga acgtgttccg ggagatcgtg aatcatcgtt cgctgcgtca cccgaacata 
000421 ataaggttca aggaggtggt ggtgacgggg aggcatctgg cgatcgtgat ggagtacgcg 
000481 gcgggagggg agctgttcga gaggatatgc gaggcgggga ggttccacga ggacgaggcg 
000541 cgctacttct tccagcagct ggtgtgcggg gtgagctact gccacgccat gcagatctgc 
000601 caccgcgacc tcaagctgga gaatacgctg ctggacggca gcccggcccc gcgcctcaag 
000661 atctgcgact tcggctactc caagtcctcc ctcctccact cccgccccaa atccaccgtc 
000721 ggcacccccg cctacatcgc ccccgaggtc ctctcccgcc gcgagtacga cggcaagctc 
000781 gccgacgtct ggtcctgcgg cgtcaccctc tacgtcatgc tcgtcggcgc ttaccctttc 
000841 gaggatccca aggaccccaa gaacttcaga aagaccatct cggtacgtag tctgcgcttg 
000901 atgctttctt gatttctttc tttgcatata tatgacctat atgcttcatt tgcaatcgcc 
000961 cgcagcgcat catgtccgtc cagtacaaga tccccgagta cgtccacgtc tcccagccct 
001021 gccgccacct cctctcccgc atcttcgtcg ccaaccccta caaggtacag actatatatg 
001081 gagtagctca tcaatcaaca ttatctattc ccaattcata tgcatatgca tgtccttcat 
001141 tccagcgcat cagcatgggc gagatcaaga gccacccctg gttcctcaag aacctgccgc 
001201 gcgagctcaa ggaggaggcg caggccgtct actacaaccg ccggggagcc gatcacgcgg 
001261 cttccagcgc aagtagtgcg gctgctgcag ctgccttctc gccgcagagc gtggaggaca 
001321 tcatgaggat cgtgcaggag gcgcagaccg tccccaagcc cgacaagccc gtctctggct 
001381 acggctgggg caccgacgac gacgacgacg accaacaacc agctgaggag gaggacgaag 
001441 aagacgacta cgacaggacg gtgcgcgagg ttcacgccag cgtcgacctc gacatgtcaa 
001501 acctccaaat ctcctgatcc atcgtcgtcc atactccact tcactagtgt tgtgttcttc 
001561 tgaccagcat cgatcatttc gttttggatc aaccccatct gcactgattg catgcatttt 
001621 ctcattcata catagataga tactcgatcg atcagtcccc aaacaaactt tgggtacatt 
001681 attacatcac ctgtttatat gagtaaggca gcattcattg atgtaaatct cccctgctac 
001741 gagtagcctg ttatcatctc tctgcttaat tgtgatcaga atcagagacc actagatgat 
001801 ggatgtaact gcagggtatg ttcaggcaca atcaccattt tactgttact tcagaagtga 
001861 caactttgat ttcgg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK250358 FLbaf78p13 1552
more... (Total Hit Count: 9 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ802546 whsct25l20 685
more... (Total Hit Count: 41 )
/rice/oryzabase