cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK099234     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0623800 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 32,200,163 -  32,202,761  ( + ) ;   2,599(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 32,200,163 -  32,200,767 ( + ) ;   605 (bp)
Exon 2 Location 32,201,832 -  32,201,950 ( + ) ;   119 (bp)
Exon 3 Location 32,202,058 -  32,202,761 ( + ) ;   704 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os04g0623800 Os04t0623800-01 J013106I02 207965 J013106I02 7805 LOC_Os04g53230.1 AK099234 37452 AP008210.2 255675107 BAF15842.1 113565499 NC_008397.2 297603645 NM_001060463.1 115460655 NP_001053928.1 115460656


Chromosome: 4 ,  position: 32,200,163 - 32,202,761 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 aaccaaaccc gcgaaacccc cacaaacgac ggtggtgaaa gaagatgaga gggctactcg 
000061 cgtgcgccac gctcgcccgc cgcgccgccg gcgcgacgtc gacggcgcgg cggcacctgg 
000121 cgggcgcggc cgaggcggcg gaggcggagc tgaagaagac ggcgctgtac gacttccacg 
000181 tcgcgcacgg cgggaagatg gtgccgttcg ccgggtggag catgcccatc cagtacaagg 
000241 acaccatcat ggactccacc ctcaactgcc gcgccaacgg cagcctcttc gacgtctccc 
000301 acatgtgcgg cctcagcctc cacggccgcc aggccatccc cttcctcgag tccctcgtcg 
000361 tcgccgacgt cgcggcgctc aaggacggca ccgggacgct caccgtcttc accaacgacc 
000421 gcggcggcgc catcgacgac tccgtcgtta ccaaggtcac cgaccagcac atctacctcg 
000481 tcgtcaacgc cgggtgcagg gacaaggatc tcgcccacat tggggagcac atggaggcct 
000541 tcaacaagaa gggcggcgac gtcaagtggc acgtccacga tgagcgctcg cttcttgcat 
000601 tgcaggtgag cggtttctgt ttcttgccct ctttcatctg gggaatctgt tggtgatttt 
000661 agtttgctta attgattgcc tcaattgatt atacatttcg gaaagggatt tagcaattga 
000721 ttatttctgg gatttgggaa tgtcatgctt tgagatgagt agtcaataca tggataaaag 
000781 gtccattcct gtcagatata aggtgggatg tgtagtcact agttagtgga tgatggtaag 
000841 cgaagaaaga ttcgcttcat atgaagtagt aattttcttg cctacttgaa gaaaaactac 
000901 atatcgtttt tattagctgg aggattagag aatataagct gttaggcttg tttctttctg 
000961 cagttttatt tgttatattg tcaacgcagg gtagaagata aggctttttt cccaggatgc 
001021 acaatgcctt gatgtgcata tgagcaatag gtagtaaggc agatgtttga attttgatgg 
001081 cgtgttggtg gaaacatgcg gtgacttatt atttgttgtt taatgtttag tggcattttc 
001141 atgatcagta aatttgattt ctggttgtca aacaatagtt ctttgctaaa tcattatttt 
001201 atttgttata gtgctttttt ggaactgact atatattgat ttgttgaggt agtggttgag 
001261 caagtttgtg tgtccttttc ttggttggtg gaagtaaagc ttcttctagt cctgtgggtt 
001321 tatttttagt gtaatacaga agtgtctagg ccatattgtc acaaaacaaa ctttaagttt 
001381 cctatgcaat cacgatacaa tacacataac ctggtttccc ttctatagca actaatttca 
001441 tcaagaaaga ggcagatgga tgtctgtgca aatgtatatt catggataga aacattgcgc 
001501 gacatatttt gtactttcaa attttcatgc aagattgctg cagaacttgt ccctcaattc 
001561 ctactccctc agcctttgtg gggttttatc atagtgatca gctttcacta ttacagcacg 
001621 tagaaattta atttttcctg acggcattac ttgtttttca cacgaacagg gacctcttgc 
001681 tgcaccaact ctccagttgc tgacaaaaga agatttaagc aaaatgtatt tcagtgactt 
001741 caagatgatt gacatcaatg gatatgcttg ctttctcacc agaactgggt atgcttcatt 
001801 tgatccttta gccaagttgt taacaaccat gctactacct ttgttttgtg gaattatttt 
001861 gaacactatg tcaatattct gagaatttct tacagttata ccggtgaaga tgggtttgaa 
001921 atctctgttc catcagagaa tgcagttgat cttgcaaagg ccctcctgga gaaatctgaa 
001981 ggcaaggtga gactgactgg tttaggtgcc cgtgacagtc tccgcttgga ggctggcctc 
002041 tgcctgtacg gcaacgacat ggagcaacac atcacaccag ttgaggctgg tctctcatgg 
002101 gcaattggca agaggaggaa agcagaaggc ggcttcctgg gagcagatgt gatcctcaag 
002161 cagctccagg aaggcccaaa gatcaggcgt gtcggtctcc tctcgcaagg accgcctcct 
002221 cggagtcata gtgagattgt gagcaactcc ggggagaaca ttggtgaggt taccagtgga 
002281 gggttcagcc cctgcttgaa gaagaacatc gccatgggct acgtaaaatc cggtttgcac 
002341 aaggctggga cagagttcaa ggttgtcgtc cgtgggaagt cctacgatgc cgtcgtcacc 
002401 aagatgccgt tcgtgccgac caagtactac aaaccctcat agatttgtac aaaggatgct 
002461 ccttcggttg aaattttctc atgcaactct cttgtcgctg cttgttctgc agcaccgcaa 
002521 ctgtaacttc tgtaaggtct catcttacag cttgacattt tacctctgcc catctaataa 
002581 tatgaaatgt gatatgcag

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ551035 bah56f07 586
more... (Total Hit Count: 34 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ720791 whvd9h24 759
more... (Total Hit Count: 67 )
/rice/oryzabase