Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK072140 Link to RAP-DB ( IRGSP 1.0 / Build5 ) |
| RAP ID | Os04g0645100 ( IRGSP 1.0 / Build5 ) |
| RAP - Chromosome No. | 4 |
| RAP - Location, Length | 33,334,460 - 33,345,703 ( + ) ; 11,244(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 33,334,460 - 33,334,578 ( + ) ; 119 (bp) |
| Exon 2 | Location | 33,335,219 - 33,335,280 ( + ) ; 62 (bp) |
| Exon 3 | Location | 33,335,573 - 33,335,665 ( + ) ; 93 (bp) |
| Exon 4 | Location | 33,335,961 - 33,336,033 ( + ) ; 73 (bp) |
| Exon 5 | Location | 33,338,858 - 33,339,163 ( + ) ; 306 (bp) |
| Exon 6 | Location | 33,339,249 - 33,339,307 ( + ) ; 59 (bp) |
| Exon 7 | Location | 33,339,420 - 33,339,551 ( + ) ; 132 (bp) |
| Exon 8 | Location | 33,339,686 - 33,339,727 ( + ) ; 42 (bp) |
| Exon 9 | Location | 33,339,832 - 33,340,365 ( + ) ; 534 (bp) |
| Exon 10 | Location | 33,340,461 - 33,340,651 ( + ) ; 191 (bp) |
| Exon 11 | Location | 33,340,810 - 33,341,299 ( + ) ; 490 (bp) |
| Exon 12 | Location | 33,341,545 - 33,341,607 ( + ) ; 63 (bp) |
| Exon 13 | Location | 33,341,976 - 33,342,077 ( + ) ; 102 (bp) |
| Exon 14 | Location | 33,342,167 - 33,342,487 ( + ) ; 321 (bp) |
| Exon 15 | Location | 33,342,566 - 33,342,658 ( + ) ; 93 (bp) |
| Exon 16 | Location | 33,342,756 - 33,342,857 ( + ) ; 102 (bp) |
| Exon 17 | Location | 33,342,990 - 33,343,094 ( + ) ; 105 (bp) |
| Exon 18 | Location | 33,343,205 - 33,343,338 ( + ) ; 134 (bp) |
| Exon 19 | Location | 33,343,701 - 33,343,884 ( + ) ; 184 (bp) |
| Exon 20 | Location | 33,344,498 - 33,344,629 ( + ) ; 132 (bp) |
| Exon 21 | Location | 33,344,719 - 33,344,831 ( + ) ; 113 (bp) |
| Exon 22 | Location | 33,344,900 - 33,344,981 ( + ) ; 82 (bp) |
| Exon 23 | Location | 33,345,600 - 33,345,703 ( + ) ; 104 (bp) |
Chromosome: 4 , position: 33,334,460 - 33,345,703 bp |
|
|
Now loading |
|
|
|
| Sequence (Data source : RAP-DB) | |
|---|---|
|
Nucleotide
Fasta Format |
000001 atttgtggct gttgggtttg gagcttcagg cgcaatggcc cccaagggcg ccggccgtgg 000061 caagggcagg ggcggcggcg gcggcggcaa aggcgacaag aggaagaagg aagagaaagg 000121 tattgtgtag tacatgttgc tggaagctcg aaaccgcttg tgctctgcaa aggcatagag 000181 ttcacttcat ggcatgaagc tgtgttgctg ttgccgtgtg aggagctttg ttcttgcgaa 000241 cattgaattc gctgctgctg ctgctgctgc tgtaatctgt gtgtgtttgc tgttctggct 000301 tgggttcttt tgcatgggta aagggtgaaa aaaagacgat ggtctctctg ctattagtag 000361 cggtaatctt ttctttattc cttcttttgc ttttgtttct cttccttttt tcttgcctat 000421 tcgtactcct gatttcggtg attatattgc tgtttaagcg cttttttctt ggtgtttagc 000481 ttcgtgttct gtgctcatga ttattactac tagtcttttg tctttttttt ttttgcacct 000541 tctcttgttc cattaatcct tttcgttcgc ttccaagcaa catggcccga ttctttcctt 000601 ggtgtaacgc acaccgtcgt gcggttgagt catgcgttct gcgagctcta gatgaatact 000661 ctgttttcac tttcacctcg acatgatgtc gccgtctccg tttttaaggt ttttttctgc 000721 agctgttggt atgatgctgg gttcttcttg tttttgcagt tgtgccgagt gccatagacg 000781 tcacggttgt cactccctat gaatcccagg ttacactcaa ggtatgtgtg gctgcattag 000841 ctggctggta cttgctgcac acatgaacac acaaaatacc tgaaaggaca atggacagga 000901 caagcaaaag tgaacagaaa ctggtatctt tgggaaaagg gggcctaatt ctgataactg 000961 aaatgtctgc agctatttgc aatgagctgc aaagccagtt attacttact ccacactgca 001021 tgctcacaat gagtccggga aattgagcct ttgaaatgga acagtgaacc tgagtgaaaa 001081 gattaatctt gtttttgttc tgtgtgtgtt caggggatat ctacggaccg tgttctggac 001141 gtgaggaagc tgctgggctc gaatgtggag acgtgccacc tgacaaacta ctcgctctcg 001201 cacgtggtaa tgcttgcttc ttgtctgcta attcaatcaa ttgcagtgct tgcagtatct 001261 actgataatt caattgcagt gctagtacta gcatctatca ttccactctt aagtcaaagt 001321 gttaattact acttaattat ctgccacttc tttgctactc ttctggaatt cacccgggat 001381 taatttgagg acagtaactt ttaatgtatg tgtgctgcaa tgctgttaat tctgtaacta 001441 attctgtata agctgtgttc ggtgaagtct gaatttgtga agcgtgtgat gtatgacgca 001501 gacgcgaggg cagcggctgg aggacggcgt ggaaatcgtg tcgctgaaac catgctctct 001561 caccatcgtg gaaggtacgg tccatggtga aagaatccgc acgctagctg ctcttcactt 001621 gttcttcctt gctcgttttg tttctttctc ctttcttttt ttttcgcttg gcaacatgga 001681 atgcttcaca taacatgatc gaggtggggt agctggcatt aggacacata attagttgga 001741 tgcttaagta gacgaagcaa cctgacgaga ggacaaaatt aagcttgagc ttgtggtgta 001801 ccgtgtggca caatctgtta gcatgacagt gttatgctac agtccaagtg tccaaacagt 001861 ctgccatcaa tgattaatca accaacggtc cggatttttc cactgaaagc tctaaagtct 001921 gacgctaata ttgctaatat tagggaagaa cctaatatca aataattaga aggggtgagg 001981 cttcaaatct aggtcgtcta gtccaccatc ttgtggagct agctggaaga cccctaagtg 002041 tttctcataa gctctaaagt ctgaacatgc gtttgccgtt gtccgatggt gaagctagtg 002101 gtttttgtta atgttgactc accggtagat catatcaaac ctaacttcaa aaatcataat 002161 ctattcaaat tgggacggca caatgcacat agatgcagcc ttgtttgtcg acgcacagca 002221 ttgaatcgaa gagcatggac cgcgccggcc tttcggctga ataaacttca gaagaaaaaa 002281 acacacacat atgactagat cactagattc gcatgctaag gtgcaacctc ccacgactcc 002341 ttgtaaatgc agtcatgcgc ctccatcacg ccccaatact ggcacaccag tgagttagat 002401 aggagcacag agtacaatct agttcattat acttcataat tcttgccact tagacagcga 002461 gacgtgcagg caggcagcag cagcagcttt gcatagtgcc tccagtttca gacattagaa 002521 gcagcgcatc ctgtttcaga cacttagcat aaaattgttt agaccaaaaa aaatgtgatt 002581 tacatctcgg gtctctaccg ttatcctcag atactagcag caaatggtag ccggtttcag 002641 tgccgcatct gtagccgatg ggagatatag atcgtggccg tgacgtcgtc gcgcgatctg 002701 cctctccgcg gttggttggg gcggggcggc taaggtgttt tttccacaca cacacacatg 002761 tcccgtctct ttcgctgccg atgtcgcatt tgccgtcgcc gcgcgaacgt ttcacggcgg 002821 ctttgccagt ttccgggagg aaggaggcgg cggttgaacc gaacctggac gcccccgcgc 002881 gcacgccggc taataagctg aggccctgtt tagatgggac taaaacactt ttaaaaacac 002941 ttttaagttc ctatcacatc ggatgtgtac taattataaa tattaaatgt aactattaat 003001 aaaatctatc cataatcttg gactaattcg cgagacgaat ctatttgagc ctaattaatc 003061 catgattagc ctatgtgatg ctacagtaaa tattctctaa ttatggatta attaggctta 003121 aaaaatttgt ctcgcgaatt agctttcatt tatgtaatta gttttgtaag tagtctatat 003181 ttaatactct aaattagtgt ctaaagatca gatatggact aaagttaagt ccctggatcc 003241 aaacactcgc tgacggatgc cggtgatgtt tcgtatggtt ttttttcaac gaaacgtgtg 003301 gcagcgatgg tcgtggcatg cgaccatgtg tctgtgtcga cgacgaaaac gagcatagaa 003361 cttaacgatt gattagtgcg taagactgta cgaggaaggg gatgactgac cgattggtct 003421 gacacgcgct cgtagtcaaa tgcacttgct tttactgcta ccgtagtcca tcattttaaa 003481 aaaaaaaacc tgaaattcaa gtgcaaagtg gcatttggac aaactggaag ggcattttca 003541 ctcgttgata gcgcttgatt agttgcctag gcgaagtccg tcttgtgcac ttctctagtg 003601 ggtcagagcc tcttgttctg ctttgggaaa tacatgctcg ttaattaact gaacatagtg 003661 ctccacctgc tgtctgtctc atatggtatt tagaactgaa agctatacta gtgtacaatt 003721 aattactgca gaattatgcg attttgtagt tgttgtatgc tccaaggtct gagctaatgg 003781 ctcaccggtt gttgtcctgt cctaaacgcc ggtacgggac aaaaggacgc ctcttggaat 003841 cagcgttggg cgttagctca agtgcctaac ttattttact cgccactctt ctgacgaatc 003901 gacgggtttg tgaattgtga ttgtacattt gtttgtagta ttggtgttta ggtggtcact 003961 gactcatact ggtcagtaca gtacgtgcta gacctgctac cggtcgtacc gatgccatga 004021 gtcaaaatca cgttgttggc catgtgtttc taactcgctg acaccgctgg gaacgtgata 004081 gaatagcgac atagcggtga tagtacttac tactatgaca cgagtatcaa aacttcagcc 004141 acgttcctgt ggatgaacat cagtcttaag ccattttttt tttattttta catttgaatt 004201 cgatttattc tattttgatt tgattcgacg acttttgttc aatatgatgc agcagctgct 004261 aaaaaaacaa aagaaattgc ttcgcttatt tgttccagaa ttgatgggcc tgttcattta 004321 taaagggaag cccagcactt ggcctattgg gcctgaattt tggtagagct aatcgagccc 004381 atgggccttt ttgtgcagag gagtacgcga cggaggcggc ggcggcggcg caagtccggc 004441 ggctgctgga catcgtcgcc tgcaccaccg cgttcgtgaa caagccccgc gacggcgcca 004501 agcacaagtc gtccaagcac gcgcgcccgg cgacgccgcc gtcaccgccc gcgctcgccg 004561 cctcccccga cgcccatggc gccggcgccg cccaggcgcc gccgatatcg gaggcgcacg 004621 acatggcggc catccgtccg ccgcccaggc tgggcgagtt ctacgacttc ctctccttcg 004681 cccacctcac cccgcccgtc cactgtaagg ccgaatgctg catcgcgttt cccccttttt 004741 gcgaggcgtg gaactagggg ttggactgac gcgtggttgc ggtgtgcagt tatcaggagg 004801 aaggagagca atggcgcttc tcaggaaggc gactacttcg aaatcgaggt gtgatgcgat 004861 gtctctcaga acgctagaga gttcgtctga tctgcagtag ccaactccgc gatgagtcta 004921 tgactacgca cttcactgac gggagttgat gtgtggccag gtgaaagttt gcaatgggaa 004981 gctcctgcac atcgttgctt ccgtcaaggg cttctattcg gcagggaagc cgcacaccgt 005041 gagccactcc ttggtggatc tgttgcaaca gctcagcagt gcatttgcca atgtgagtaa 005101 ccatgaatcc tgaacatgta taatgtataa cgcgttgctc gatttacttt ctgctcctgt 005161 ttgtttttgg ctaactatac agccgacctt atctgacagt gatgtcttct aattcatttt 005221 gcacaggcat atgatgcact gatgaaagct tttctggatc acaacaaggt ggttatagta 005281 aatgctgttt cctttttttt tttccccctt ataccgtaga tttagtcaag taaaatgcta 005341 aatttgacaa ggatacttct ttgcatctcc agtttgggaa tctaccatac ggatttcgtg 005401 caaacacatg gcttattcct cctatatact tggattctgc tacaaagtgc ccagcattac 005461 cagttgagga tgagaattgg ggtggaaacg ggggtggcaa tgggcgagat ggaaagtatg 005521 acagaagacg atgggcaaaa gaattttcta ctttggctag aatgccatgc aaaactgagg 005581 aagggagggt gatcagagac cggaaggctt ttcttttaca caatctcttt gtagatacag 005641 caatttttag agctgcatca acaatacaga gactcattga tctgtctggg aactcaacta 005701 gtcaacaagc tggcctagat ggttctttag caatcgagga acgtgttggt gacttgctta 005761 taactgtaaa gagggatcag gctgatgcta gtttaaagct ggaggataaa gttgatggag 005821 ttgcactcta tcaaaccggt tctatggata tatcacaaag aaatcttcta aaaggtttaa 005881 cttctgatga aagtgtcgtt gttaaggtgg tggcatacta ctttcatatc tctttttttt 005941 tcaaattatt ttttgtcctt aatattaatt accgatttcc accaacatga ttaccattca 006001 ggacacctca atactcggag tggttattgt taaacattgt ggatatacag caacagtgaa 006061 ggtttcaggg cgcacaaagg acggaaatgg tggcaaacaa accagtgata tctgtgatca 006121 tctcgatgga atttcgaatg ttgatgtaga tgatttgcca gatggaggtt ctaatgcctt 006181 gaacattaac aggtttgata tatgttccca tgtaaactta ttcacatgct tgctcatcag 006241 tagagaaaat aatgttcact ggtaactagt ttttcttaca tttggcacac aataatgttc 006301 cattaacaca actctctctc tctctctctc tctgtatatg tgtgtttcag tctaagaata 006361 tcactgccaa aaattgtcaa ctcagacatc gctagtactc agtgtcctac tccgcagtct 006421 catgttgata atcatgcaag gaaactagtg cgcaaaatac ttgaagatag cttgatgaag 006481 ctggagaaca tgcctgccaa taatcctaga accatcagat gggaacttgg gtcatcctgg 006541 ctgcaaaact tgcagaaaaa ggattcgccg gcatctgagg acaagaaaaa tgcaggacat 006601 gttgaaaaag agacaactat caaaggtctt ggtaagcact ttgaacagct aaagaaaatt 006661 aaaaagaaag aatgccatgt tgaaggtgct atgtctgaga aggaagactc tgacagtaac 006721 tgctctgtca taaatggcat ggaagaatct gaaaacacca aggagactga tattagcaag 006781 ctgatgtcag aggatgattt ctgtcgcctt aaggatctgg gagctggact tcatcaaaag 006841 gtaatttata gctatacagt tcatcaatca atatggtctg aacaatttag ttttatgtcc 006901 ggtaagctca tacatgctat tttgcttggg attaaagttc taatctgtta aaattttcac 006961 cagaagcctt gtgttaagct gaatatgatg tagtagcaga agcgcagcat tgtatttttc 007021 cagtaatcag gaatatattg gttattttgc tgtttaatac ttaactttgt tatttcttga 007081 actagtccct tgaagagctc actatgatgg cccataaatt ctatgatgat actgcgcttc 007141 caaagctggt aagccttgcc ttgtttattt ggagatcctt atgtaaattc tcgaacattt 007201 taatcggcac tctcttctct gaaaacaaag tagtcgcttt ttgctggcat tggtattgtt 007261 tattgtttat tgttgtagta agtagtttag ttatggtact aatgttcagt tagttcattt 007321 gtaattttga ggaagtagtc aatccacatt aacaattcgc accacaaagt ccaaaagaat 007381 tacagttctt gaaaattttt gcgtgtaaag aagaaaaaaa aaacaatgtt ttttttatgt 007441 tgtcttaaac tttcttaatt attatttgat gcccataata gatagttaat tttttcttgg 007501 aataaaataa tgacaggtgg ctgattttgc ttcccttgaa ctttctcctg tggatggaag 007561 aaccatgacc gatttcatgc acacaagggg tcttaatatg tgctccttag gccgtgtggt 007621 gagtttaaat ttattctgaa ttacttttgc ttctatggtt ggatggaatt tccagaataa 007681 cctttttttt atatataaat taaacaggta gagctcgcgg agaagcttcc acatatccag 007741 tcaatttgca tccatgaaat ggtcattagg tcctttaagc acattgttcg agctgttatt 007801 gcagctgttg atgacatgca aaatatgtct gcagctattg ctgagacttt aaacatttta 007861 cttggatgcc caagacttga aagtggcact gaaacagatg cacatagtga acataatttg 007921 agatttagat gggtagagag gttcctttct aaaaggtaca attggaaatt gaaagatgaa 007981 tttgcacact tgcggaaatt tatcattctg agaggtcttt gcagtaaggt acaatccaaa 008041 gtgtgttcca aaacattcat agagtacagt ttctgaacat gcataattaa tatgtttatt 008101 tctcaggttg gacttgagtt ggttgcgaga gattatgata tgaatagccc aaatccattt 008161 gacaaatctg acatagttaa cattattcct gtatgcaagg taggacacta tcagaaaact 008221 taccactgta ctttccccac cacctgaatt aataattata ttgatttgat ctgctttggc 008281 cttgcgcttc ttacagcatg tggtgtactc ttctattgat ggtcgaaact tattagaatc 008341 atcaaagatg gctttggata aaggaaaact tgatgatgcc gtcaacttcg gaacaaaggt 008401 atgcaataat cagttctttt ttctgtacgt tgtttaacag ctatgctaaa atatttctct 008461 tcctgctttg gttgggtgaa gttaccattc taaattcttt cattaactat ttttttttct 008521 tttcttgaag gcgttgtcca aaattgtagc agtttgtggt ccataccatc ggctgactgc 008581 taatgcgtac agtcttcttg ctgtagttct ttaccatact ggagatttta atcaggtatt 008641 tcaatgaatt tggtgggctg tattctatct gctgcatagt gatgtgtttt tggcacaatg 008701 tttggcaact gcatttttca ctagacttct gttctttctc tgtaggcaac tatatatcag 008761 cagaaggcac ttgatatcaa tgaaagagag ctaggtcttg accacccaga aactatgaag 008821 agttacgggg atttatctgt cttctactac cgtctccagc acatcgaaat ggctctaaag 008881 taagtgctgc tattaggtgt tttgttgtgg aaacacaaaa gctagtttca tgacttggct 008941 tgtagctggt attactatca tgcacaatgt cgttacgctg gttcatttct agccattaca 009001 tgcattaaat atattgcctg tagaatggat actactgcat ttgtacggca ctatggctgt 009061 attaatttgt agacttgaac tgtgcattgt tttgcattat tgtccatgat tgttacttgt 009121 ggtttgcacg gaaacttgct gaaggcacat atttgcttga caatattgtc aaaactcatc 009181 ttccatcttt ctttttttgc cttttgtttt ttgtatcgct aatggtatct ttttcttaaa 009241 ggtatgtcaa ccgtgcacta tatctactcc aattttcttg tgggctttca catccaaatt 009301 cagctgccac atacataaat gtggctatga tggaagaagg tatgggaaat gttcatgtcg 009361 ctctcaggta cttgcatgaa gcactgaagt gcaacaagag actgctagga gctgatcaca 009421 ttcaggtaaa caaaactaca tatttttctc ttaccgtgct ttcacagctt tatctgtttt 009481 cctggaaaca ataatctaat tgtttttttt gttggacttg attgatgtgc attaaagtac 009541 agtcttgtaa gatcaattcc atgcgtacta tctcttgcac caatatttct gcagaagtac 009601 tggcattggc ggcatacttg tcttattaag gatattagac atatacacct ctgatacagt 009661 agaaatgtcc cataagtatc tatgtctgaa gcaaactttt tgatttagct ctaatatccc 009721 tagatattct ccattgctgt ccctcaaagg ccatgagcaa ttgtttaagt ttctttcaat 009781 ttcctatcca acttgtttat tgcatatcca atttcaaaac tagcatcttg tttcagtagt 009841 acccgcgcca ccatgacttg tatcttttaa ggaaaggttt attttgatgt ctagacccac 009901 agaaacagtc ttttctgtat atttcaatcc gtttgacata atgcatgtaa ctacggacaa 009961 cttcaatggc gtatttgtta tgcatatgat cccgtgattc agttaacatg aattttcatg 010021 catttctttg aacaacagac tgctgcgagc tatcatgcca tagccatagc cctctcaatg 010081 atggatgcat actccttgag tgttcagcat gaacagacca ccttacagat acttcaggag 010141 aaactaggac aagatgacct tcgaactcag gttttttttc ccttcaaaat atgcaatgac 010201 gagtccaaat actgctatgt tctcttggac tattagacat gataattttc ctgctgcagg 010261 atgctgctgc atggcttgag tattttgagt caaaagcatt agaacaacaa gaggccgccc 010321 gaaggggcat cccaaaacct gactcatcta ttgcaagcaa aggacatctt aggtatgaat 010381 acactgtgca ttatcagtcg caaactgtga tgatctggat tgaaacattt atctttccag 010441 tgtatcagat ctacttgact acataagccc ggatcaggaa agaaaagaga gggatacaca 010501 aagaaagggc aggcgtgcaa aggtgattat aacatgccta ctttttcaaa attattgttg 010561 ttaaaatgta gtcagaagag ataagtgcac actggacagt ggagacaatt ccatcagtat 010621 tcatgaaaag tctagatgag aataggattg gcacaataac ttccatatag gatgtctggt 010681 atatgaactg atgaacatat gctggcagca aatcagcaat cctatccagt tcatgaaact 010741 agtaaaaggt tatgaaccat catcactgac ataataacca tgacagttat ccccaccagt 010801 cattgttgga gcatgaacta tgagaattga aaagatattc ccgcatccac agctagtcca 010861 ttgataccag gcatttatcc agatgattcc agttcaaccc attaacttag caatgaattg 010921 acaacacaat ttcttcttag ttgggaattt aactcccttt acatatggat atttaatcct 010981 ttgttttcta atatgcttca tgaattggga atcacaatat acatattttg gaagtccatt 011041 gatgtcatgg tttcaattgt tgcctaaaca ttatgcaagc ttttatttta cccttactac 011101 cctttgcttt ccttttcacc ttgtatagta ttaaatgcag aataatatca gagcccatca 011161 aggtgaatta gttgaagaaa aggagagctt tgagcacgac ataggatctc ctcatgaagc 011221 aaacaaagag gagtttcaac aagt |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| BJ481352 | bah59o05 | 652 |
| more... (Total Hit Count: 5 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ727299 | whvs17b03 | 835 |
| more... (Total Hit Count: 3 ) | ||
