cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK069804     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0613000 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 31,577,384 -  31,579,741  ( - );   2,358(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 31,577,384 -  31,577,889 ( - );   506 (bp)
Exon 2 Location 31,578,397 -  31,578,546 ( - );   150 (bp)
Exon 3 Location 31,578,879 -  31,579,741 ( - );   863 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os04g0613000 Os04t0613000-01 J023026J07 205547 J023026J07 4999 LOC_Os04g52310.1 AK069804 34112 AP008210.2 255675107 BAF15765.1 113565422 NC_008397.2 297603645 NM_001060386.1 115460501 NP_001053851.1 115460502 Q7XLD4 ZIP3_ORYSJ


Chromosome: 4 ,  position: 31,577,384 - 31,579,741 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ggccaaagaa tgacatctct tctcatcatc ttattccctt ctacttaaat aaaaaaagaa 
000061 gaagaaaaaa cccatcattg cctccatctt ctggtcaaag gatgacatca atccctatca 
000121 tctcatcccc tcctatataa agaacccagt actaccttca tctctgactc atagcaatat 
000181 acatacatcg tatcacaggg aaataatcaa cataatcagc aacaatggga gccaagaagc 
000241 ataccttgca agtgcttcca tggctactgc tctttgcgca gcacactgca gccagtgcct 
000301 gcgactgtgc taacaccaca gacggggcag acagacaggg tgcaatgaag ctaaagctca 
000361 ttgccattgc atccatcctt gcagctgggg cggctggtgt cttggtgcca gtgattggcc 
000421 gctccatggc tgcgctgcgc cctgatggtg acatcttctt tgctgtcaag gcatttgcag 
000481 ccggcgtcat ccttgccact ggcatggtgc acattcttcc agcggcgttt gatgcgctca 
000541 catctccatg cctcaaaagg ggtggtgggg ataggaatcc cttccccttt gcgggccttg 
000601 tttcaatgtc tgctgcagtg tccacaatgg tggtggactc attggctgct ggatactatc 
000661 accggtctca attcaggaag gcacgcccag ttgacaacat caacgtacac aagcatgctg 
000721 gagacgagag ggctgaacat gcacaacaca taaatgcgca cacacatgga ggacatacac 
000781 attcacatgg tgatatagtg gtctgtggct caccagagga gggttcagta gctgaatcaa 
000841 ttcgacataa ggtagtatct caggtaacag cagtcacttg aagctcatag gccttcctgg 
000901 caacagtaat gagaataagt ttagtctatt gtaatcttga aactacaata gtgcaggatg 
000961 atgttgatta tctaatatct ctttttactt atttccataa aacacataga aaacatatat 
001021 ggggaagaga agatacctat tcaatggata tgtctgataa tctgcacttc aggggaaact 
001081 tttcccacta aactcagaat taactccatt tgcacattga ttgccaacta aatgaatgct 
001141 tcacaaaacc agataggccc tcttgcaata accacatgaa tttttggcca tgcaggttct 
001201 tgagctggga atcttggtgc attcagttat cattggagta tccttaggtg catctgtgag 
001261 gccatctact atcaggccac tagttggtgc cctcagcttc caccagttct ttgaaggtgt 
001321 aggtttgggt ggttgcattg ttcaggtatg tccaagtact gtaacctaga tagtagacac 
001381 ctgatgacaa atatctaact tgttgtttcg acttttgaca aaagatagca aaatgcttgc 
001441 tcgaaaaggc ttaacatcaa catgctcgta ggccagtgga agggcccttc cgcagaaggg 
001501 gagagaaaaa aagaaataag gcagagacat acaaagttgg aaaaaaaaag gcacaatagc 
001561 aacaagacac attgcaagca tgaaaagtta ttagccattt tcttcaagaa cgaagtaaca 
001621 gaccacaaaa aaaagaagcc gagaacaaag taacaggctg caaaagaaaa ataaagaaat 
001681 ataactgttt catatagaga acataggttc actagttagg taagaataat aatagattta 
001741 tcgagaaatc aaataattgg acacaaagaa gaaagagaca actatgcata taacatatca 
001801 tgtcttacag caacaaaaag ctaatatgtt tgattcattc ttcttactgc aggctaattt 
001861 taaggtaagg gcaaccgtca ttatggcaat atttttctcc ctgactgcac ctgtgggcat 
001921 cgtgctagga attgcaattt catcgagcta caatgtgcat agctcaactg ccttcgtcgt 
001981 tgaaggagtc ttcaactcag cctcagcagg aattttgatc tacatgtccc tagttgacct 
002041 tctagcaaca gatttcaata acccgaagct acagattaat acaaagcttc agctcatggc 
002101 ataccttgca cttttcctag gtgctggact gatgtcaatg cttgccatat gggcatagat 
002161 cttcagaata acagaggatc ttatttccca gataggcttg atttgtatta atctatgagt 
002221 tttctatctt cgcaaaataa catactcttg gtggagtatt tattgtatcc atcctagatt 
002281 ttctaaaacc aaagcttatc tcaggtgatc tctttgtact ttatgatatg ataatacatg 
002341 atgacttaac ttgttctt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ567058 rwhms15o04 605
more... (Total Hit Count: 2 )
/rice/oryzabase