cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK069629     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0208400 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 7,243,364 -  7,245,465  ( - );   2,102(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 7,243,364 -  7,243,972 ( - );   609 (bp)
Exon 2 Location 7,244,073 -  7,244,216 ( - );   144 (bp)
Exon 3 Location 7,244,352 -  7,245,465 ( - );   1,114 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os04g0208400 Os04t0208400-01 J023024E15 205359 J023024E15 4834 LOC_Os04g13150.1 AK069629 7261 AP008210.2 255675107 BAF14161.1 113563818 NC_008397.2 297603645 NM_001058782.1 115457293 NP_001052247.1 115457294


Chromosome: 4 ,  position: 7,243,364 - 7,245,465 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agtgactcgt cgccgccgtc cagaacccca aaccaaaccc tagccggcgg cgtcgtcgga 
000061 atccatggcg gaaggtgcgc cgatcatcta ccttgacccc gccacggtgg cggaagcgcg 
000121 ccgccgcggc gacgacccgc gcaagctgga ggagtgcacc aagtacttga tgacgcacat 
000181 ctacgggttg ctccctggcc cacccgtacc catcgccgcc gcccgcaccc acgccgcctg 
000241 cgccgccgca gcctccgacg gcgtcgaccg catcagcgcc ctccccgacg cgatcctccg 
000301 caacatcgtc tcccgcctcc ccgtcaagga cgccgcgcgc accgccgcgc tctcccgccg 
000361 ctggcgcccg ctctggcgct ccacgccgct cgtcctcgtg gacgcccacc tcttcccgcg 
000421 aggtcgaagc ttcggtgtct ccgcctctgc cccgacgcgc gccgacacgc cgggcatcgt 
000481 cgccgccgtg tcccgcatcc tcgccgcgca cccggggcca ttccgctgcg tccacctcct 
000541 ctgcggcttc atgggatcgt accaggccca gctcgagcac tggctccggt tcctcgccgc 
000601 caagggcgtc gacgacctca tcctcgtcaa ccgcccatgg ccgttcgagg cggctctccc 
000661 tgccgccatc ctccgcatct ccaccctcac ccgcctctac atcggcatgt ggaagttccc 
000721 cgacattgcc ggcctcccca ccaacaccgc cttccccaac cttcgcgagc tcggcatcta 
000781 cgccgtcgcc atggagaagg agggccgcga ggtcgagttc atcgtggcga gatcccccgt 
000841 gctggagacc ctcaacatcc aaggaggcaa cacgcaggtg ttgcgcctcc gcctggagca 
000901 ccggagcctt cgttgcgtgc agatctgctc gtgttgcgtg gagaatctcg ccgtggtgga 
000961 cgcgccatgc ctcgagcggc tcgtgctcta tgattctttg agcaaggatg actcctgcgt 
001021 cagggtcaag atcgtccatg cccccaggct gcgcttgttg ggaaacttgg agacaggatt 
001081 ccacatgctg gagatccatg acacctttgt cagtgtgcgt atgccattgc catcatctct 
001141 aacctcttac tgttcagttt gtttgttcac tctgattctg aattgctgat gtcccaaatt 
001201 ctgatatttg aatatctgaa caatccattt ccatcttaat ggatttcagg ctgggatcag 
001261 gtcgagccca agcgcattgt tcacgagcgt caagatcctg gggttgaatg tgaattttgg 
001321 agtcaggcat gatgcccaga tgctgcccaa cttcctcaaa tgctttccca atgctgagtc 
001381 cctgcatgtt gtggtatgaa ttgaacctgc ctcattgcct tcttgtgcta ctgcatgatc 
001441 aattagttgc tagctgaact ctgaaacatt tactgattta accatttctg cagtgtgcaa 
001501 aatgttctga agccaccagc ttggtaagcc ccaatttctg ggatgatgct ggcccaatcg 
001561 aaagcatcgt gtcccatgtc aatgtgctta cattccgtga attcaaaggg gaggccaacg 
001621 cgatatcctt cctgaagtac ttcgtccaga atgcgcagat ggtgaagaat gtggctgtgg 
001681 tgttggccaa tccacaattc acttcatact ccattgatac gctctggaca gcgaagatcc 
001741 tcaaatctgt gagatgggcc agtaagatct cttcaatgca ggtctatagg agcgatgact 
001801 cagaaggtgg tctgatttgg agctttcaga gaggatcaga ttattctatc cgtgaccctt 
001861 ttgtgtacta ggaaccagag gtgcctacat atgtgatcca tccaagctca gtttctctga 
001921 aagttgttag tgttatgttt gcaggatagg tgtatctaca tctccacatg caaggcattg 
001981 ttttttgttg ttggcatgtg ctcaagactg gacagggttt ttggtctcat tagtagtgta 
002041 gtacgattag ctttaattta gtagcaagtt tattctagcc aacaagtgcc attccacaga 
002101 gg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
BY839681 baet32g02 429 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ647527 whei9e11 562
more... (Total Hit Count: 3 )
/rice/oryzabase