cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK068159     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0578600 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 29,678,042 -  29,680,811  ( - );   2,770(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 29,678,042 -  29,679,121 ( - );   1,080 (bp)
Exon 2 Location 29,679,199 -  29,679,526 ( - );   328 (bp)
Exon 3 Location 29,679,610 -  29,680,159 ( - );   550 (bp)
Exon 4 Location 29,680,279 -  29,680,433 ( - );   155 (bp)
Exon 5 Location 29,680,544 -  29,680,811 ( - );   268 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum
Os04g0578600 Os04t0578600-01 203760 J013135D03 3436 LOC_Os04g48930.1 AK068159 7726
Os04g0578600 Os04t0578600-01 203760 J013135D03 3436 LOC_Os04g48930.2 AK068159 7726
Os04g0578600 Os04t0578600-01 203760 J013135D03 3436 LOC_Os04g48930.3 AK068159 7726
Os04g0578600 Os04t0578600-01 203760 J013135D03 3436 LOC_Os04g48930.4 AK068159 7726


Chromosome: 4 ,  position: 29,678,042 - 29,680,811 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acttgtgtcc cagtgagtga caatctaatc ctgaccagat acagcggtta attaacaggt 
000061 taagcgcagg gtatcgacgc gatggacact aggcatggcc gagacaggaa tggcgcgccg 
000121 gcgaccagga gcgccatgct tctcctggcc gccgccgtgt tcgttgggtg gctcatgatg 
000181 tgggtcatgt tgccgaccag gacattcagc tcgacgtggg cgccgacgct cgcctcccac 
000241 acaaattcca cctactttgg caaacaaggt ttttttcccc atctcttgta ctatcagctc 
000301 agctgtatat ccattccact gcatatctgc attgccgccg tgatcatctc ttcgtgttct 
000361 tcgtttcggg atttgcaggg acgagaatcg tgatctacgt gttcccaata cctgtgcatg 
000421 tctgaatcgt gaactacact gactttgcca atactgtttg tcagtgtagt tgcgtgcatt 
000481 tacctgcact tgctgaagag gagcggcgac agtactgggg tccaaagtca gaggtacggt 
000541 cagttctggc taaactggga gaggagatca atctcatcag acattccgca tcaaatgtac 
000601 tagtactaat gcaaattttc tgcgtgttcc tctcttgatt ttgttcctgc agaggagtat 
000661 tctgtacgag aatggcggcc tggaggagac ctgtgctggt gagaggtcca ctgggaattg 
000721 tgacaggcat agaactcgcc ttctttctct tgttcctggc actcctggtc tggtcctact 
000781 ccgccttcat caacctcgac ttctccaaga tccatgtcaa gcctgtcgag aaaatgtcga 
000841 ccaactcacg ataaccatgc attaactccg tccaaaaaaa aaagcaaaat aatactcgta 
000901 tatgtttcat ctatgatctg taatttactt gtgtgctaac ttttgtaagt atgcgaaatg 
000961 ttcttaggtg gcaggcgaag ctggacagag cagcgctgcg gcttggccac gttgggagct 
001021 tctgctgcgc gttcctgttc tttccagtcg cacgcggctc gtccctgttg ccgctcattg 
001081 gcctcacgtc ggaagccagc atcaagtacc atgtctggct gggcaatctc gttatgctct 
001141 tcttcacagc tcatggactc tgctacatcg tcttctgggc atcgactgat caaatccacg 
001201 aggtaataca aactaacgat ttcttctatc gtcctagaca tgtccaatgt cgggacttaa 
001261 taaacggcca attatgtgat tccagatgct gaaatggaca agaacgaaag ttgcaaacgt 
001321 ccccggggag ctcgcgctgc tcagcgggct ggtgatgtgg gtgacggcgc tgccgcgcgt 
001381 ccggcgccag atgttcgagc tcttcttcta cgcgcaccac ctctacgccc tcttcctcgt 
001441 gctcttcgcg ctccacgtcg gcgtcgcctt cttctgctcc atcctgcctg gcgtgttcct 
001501 cttcatggtc gaccgctacc tccggttcct gcagtcccgc gtccgcgtcc gactcgtctc 
001561 cgcccgcctc ctagcgtgcg acgccgtcga gctcaacttc tgcaaaagcc cccgtaggtg 
001621 tcacatatat ccgacacgtt cacggtgcaa gtaagcatgt tctgacactt gatgtcgtga 
001681 tcacttgcag atttgacgca cagtccgatg agtacggtgt tcatcaacgt cccatgcgtt 
001741 tcgcggctcc aatggcaccc attcacggtg acgtcgagca gcagccttga gcctgacagg 
001801 ttaagcgtcg tcgtcaagag agcaggaaga tggacggaga agctgtacga gacgatctcg 
001861 tccctgccgc cgtcgcagcc cgggcacctc gacgtctcgg tcgaggggcc ttacagccag 
001921 gccacaccag caagcttcct tcagtacgac tcgttggtga tgatcagtgg cggcggcggc 
001981 atcacgccgt tcatctccgt catacgcgag ctcgttcacc ggagcggcac ggcggcagaa 
002041 gccgcgacgc cgagccttct cctcatcgcc gtgttcaaga cgtcggctga cctggccatg 
002101 ctggacctca tcgtccctgc ctccggtggg ttctccgaca tctcccgcct cgaactgcgc 
002161 atcgaggcct tcgtgacgcg agaaagcgtg ccctccgcgg cgatgtcgtc gcaatcgcca 
002221 caaagtgccc nagagagtct tgttcaagcc gtcgccgtcg acgcgcccat cgccccggtg 
002281 ctcggccaca acggctggtc tgctcgccgc gtcgtctcct cctcattctt catcttcctc 
002341 ttgctcgtcg gcgcggtgca gcgcctgtac atataccccg tcgacggcaa cagcaaccgc 
002401 gtgtacccgt ggtcggcaag gacgttgcta aacctgctgc tcctctgcgt cggcatcgcc 
002461 gtggcggcga gcgcggccgt cctgtggaac aagcggagga gggccgagga ggcgaagcag 
002521 gtcgagaacg tggcgacgcc agcgtcgtcg ccggcaacgt ggctcgacaa gccgcgtcgt 
002581 ggggacgcag aggtaggccg tcgtcccgat ctcagaagta cgatgcaccg ttcaatcttg 
002641 ttctcctttt gggtcgaatt ggttctgtta cctttgaaga gtgcgtgaaa tgcgaaattt 
002701 gtctgtgcaa cgatgttgct tgtcgaaaca agatttcggc aataataaaa gaggtggcta 
002761 tcaagcttgg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ608372 rwhva16m02 819
more... (Total Hit Count: 2 )
/rice/oryzabase