cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK067649     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0669800 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 34,654,726 -  34,657,839  ( - );   3,114(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 34,654,726 -  34,655,203 ( - );   478 (bp)
Exon 2 Location 34,655,888 -  34,656,102 ( - );   215 (bp)
Exon 3 Location 34,656,524 -  34,656,725 ( - );   202 (bp)
Exon 4 Location 34,656,805 -  34,656,979 ( - );   175 (bp)
Exon 5 Location 34,657,128 -  34,657,437 ( - );   310 (bp)
Exon 6 Location 34,657,523 -  34,657,839 ( - );   317 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os04g0669800 Os04t0669800-01 J013114G08 203188 J013114G08 2946 LOC_Os04g57400.1 AK067649 33108 AP008210.2 255675107 BAF16121.1 113565778 NC_008397.2 297603645 NM_001060742.1 115461213 NP_001054207.1 115461214 Q7XR61 MTK1_ORYSJ


Chromosome: 4 ,  position: 34,654,726 - 34,657,839 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acacgcgcac tcgattcccc actcctctcg cgggtcgcgg ccacttcgcc gccggcgctc 
000061 gcatcggtca actcgacgcc acggccacac acgcaccggc catggccgcg gcggcggagc 
000121 agcagcagca gcagcagcag cagggcttcc gcccgctcga cgaggcgtcc ctggtggcct 
000181 acatcaaggc cacgcccgcc ctcgccgcgc gcctcggcgg cagcctcgac gccctcacca 
000241 tcaaggaggt cggcgacggc aacctcaact tcgtctacat cgtcctctcc gacgccggct 
000301 ccgtcgtcat caagcaggtc cctatctcct ccacgcgccg ccgccgccac acatgtacgc 
000361 atcttctctc tccgttcctc cgctgacgac gctgcaatcc aggcgctgcc gtacatccgc 
000421 tgcgtggggg attcgtggcc gatgacgagg gagcgcgcct acttcgaggc ctccgcgctg 
000481 cagaagcacc gcggcctctg cccggaccat gtccccgagg tctaccactt cgaccgggcc 
000541 atgtcgctga tcgggatgcg ctacatcgag ccgccgcaca tcatcctccg caagggcctc 
000601 atcgctggcg tcgagtaccc gctgctcgcc gagcacatgg cggattacat ggccaagacg 
000661 ctcttcttca cctcccttct ctacaactcc accactgatc acaagaaagg aggttggttg 
000721 atttattata caggtttggt ttgcctgtga aaagggagaa aaatgagaac caaattgata 
000781 gaatgttgtg ttctgtgact atgaaaaggg agaaaaatga taaccaaatt gatggaatgt 
000841 ttgtgttctg tgaactgcag ttgctcagta ctgcgataat gtggagatgt gtaggctcac 
000901 agagcaagtc gtgttctcag acccatacat gctcgccaaa tacaatcgtt gcacatcacc 
000961 cttcctagat aatgatgctg cagcggttcg agaggatgct gagcttaaat tggagattgc 
001021 tgaattgaaa tcaatgtaac tatctttcca gattaaacca gcgcttttct tttcttttca 
001081 tattggagat gatggacatg atttgcatat gcaggtttat tgagagagca caggctcttc 
001141 ttcatggaga tctccacact ggttccatca tggtgacacc agattctact caagtgattg 
001201 atccagaatt tgctttctat ggcccaatgg gttacgacat tggggccttc ctggggaact 
001261 tgattttggc atatttttca caagatggac acgctgatca agcaaatgat cgtaaggtat 
001321 gtatggattt attggctaat aatagtaaat gaaagtgtgt acttttacct ggtccacaaa 
001381 tgtcctcttt tttttttatg tgacaaaaag atagtttttc tttttgggtg gttaagttgt 
001441 tttgcgtttg ctaagataat ggcaaccaca tgtcttcctg tgtacttgta tcctatagaa 
001501 taattagcaa ttgatattgt tgagatatgc cgtatgtaac agagggagga gggtgctcgg 
001561 cagacaataa gttgaataac ttgccttact catcacttga atgtccctga gtaatgggaa 
001621 ctgcagaaat gacaagttat atggcaaagt gcaatggcag catctagatt ttagaaggta 
001681 ttttcatgat gtatcacggg gcataaaata agttatatga ctgtacatat ttttcaggct 
001741 tacaagaaat ggatcttgaa gacaattgaa gattcatgga atttgttcca caagaagttt 
001801 gtcgaattat ggaataaaca caaagatggg aatggggaag catacctgcc ccctatatac 
001861 aacagctcag agcttttgtg ccttgcacag aagaagtaca tgacaagcct atttcatgac 
001921 agtcttggat ttggttcagc aaaaatgatc aggtaaataa atgttgaata gtataggaag 
001981 aggagattac tgcgaatatt ggacacattc tattgagcct taggagcccg catatatagg 
002041 aaataaatag ggtagagata aggaagtatt atatttaaca tggtattaga gcctcagggg 
002101 ccagtatata gatacatgag ataaggaagg attacagata tggaaaaaat ccacataaat 
002161 caatcatatc ctaatatgac tctaactacc atatactcta atattaaaca gtacaattat 
002221 atagtctata ctactaagtt aatttgttga atcttattta cgtctagact atgaagatat 
002281 actagacctg ccctttttaa ctgtaaggaa ctcaaaggca cgctaattta ggccaaaagt 
002341 agaggtttcc gatgtcaatt ttgatgcagc acttcttttt cataaatgta tgtcagtatg 
002401 tggtgtccta aaagagatgt tccagaagac cacctttgac aagcataaag tatgactgaa 
002461 aaccgtcata aatggttgaa ttgaggcaat tcaggatatt atgttgtgag aagctaagtg 
002521 taaagaactt aaaatcacat ttaaacacca ttttcaaatt ttttatctgt attccgatgc 
002581 cttgtgcatg atcctcaagc gacttctgtt tactaaattg gaccatacat atgtaggaga 
002641 attgttggaa ttgctcatgt tgaggatttt gagtcgattg aggatgccag caagagagct 
002701 tcgtgtgagc gacgtgccct taattgtgca aaggcaatcc tgaagggaag acgccagttt 
002761 gaaagcatcg ggcaagtgat tgtgcatgta caatcgtttg atcgggactg ataatgccaa 
002821 ccatctacac gacctttctg attgaggaga caaaagtttt catctgttta ccataagcga 
002881 ttatctgtgc ctattacaaa gcagaattgg ccagttattt gtgcttttag tactttggat 
002941 catgaaaagt gtgtgcactc tgcaagatcg atgttttttt tcaccacttg gctaagcctt 
003001 ccaccagctt ccgggcttct tagtttatga gctgaataat ggaagttcag cacaaacgtt 
003061 tgtccatgga tatggacgag tgtgttatta caaataaagt tgatagtttt cggc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ477900 bah41b23 653
more... (Total Hit Count: 7 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ279521 whr3f17 730
more... (Total Hit Count: 17 )
/rice/oryzabase