cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK067411     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0630800 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 32,584,798 -  32,587,458  ( + ) ;   2,661(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 32,584,798 -  32,584,952 ( + ) ;   155 (bp)
Exon 2 Location 32,585,319 -  32,585,485 ( + ) ;   167 (bp)
Exon 3 Location 32,585,599 -  32,585,799 ( + ) ;   201 (bp)
Exon 4 Location 32,586,346 -  32,586,505 ( + ) ;   160 (bp)
Exon 5 Location 32,586,807 -  32,587,044 ( + ) ;   238 (bp)
Exon 6 Location 32,587,141 -  32,587,458 ( + ) ;   318 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os04g0630800 Os04t0630800-01 J013104E10 202931 J013104E10 2719 LOC_Os04g53850.1 AK067411 34509 AP008210.2 255675107 BAF15891.1 113565548 NC_008397.2 297603645 NM_001060512.1 115460753 NP_001053977.1 115460754


Chromosome: 4 ,  position: 32,584,798 - 32,587,458 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ggtgggttgt tgtagcgacc gatcgacgac gacgatgtcg gcggtcgaga ggaagacggc 
000061 gtgcgtcacc ggcggcaacg ggtacatcgc ttctgcgctc atcaagatgc tgttggagaa 
000121 gggatatgct gtcaacacga cggtcagaaa ccccggtaag attctcctcc ttttttcact 
000181 ctctagttcg tgttttttac tttttttgca gtgtttcttc cattcatatg atcatatcct 
000241 cggcctgcta gtaccatatg agctaattag cgagtgtttt cgcttaacca ctcattagca 
000301 aatggcaggc ttagccgcac atgtggacaa tatcatatct ttcgaaaggg agaagttgtc 
000361 aaatcttatc cttttccaac ttccaaccga tagttacata tatatatcgt gacatatgat 
000421 ggatcaaaat atgatgcgac tttatcaata cgatggtgtg aattttcaga gtttcagttt 
000481 catctctgaa gattccacta attgctgcgg tttgtattca gatgacatgg cgaagaactc 
000541 ccacctcaag gacttgcagg cacttggccc cttgaaggtc ttccgcgccg acatggacga 
000601 agaaggaagc ttcgacgatg ccatcgccgg ctgcgactac gccttcctcg tcgccgctcc 
000661 gatgaacttc aattcagaga atcctgaggt gaacagctaa ttaacatcac tattgactct 
000721 gatactctgt aactgatgtg ctctactaat cttgatttcc tttttttttt tttttttttg 
000781 cgatgttgat ggtggtggca gaaagatctg gttgaagccg ccgtcaatgg aacgctcaac 
000841 gcgatgagat cgtgcgcgaa agtagggacg gtgaagcgcg tgatcataac atcgtcggac 
000901 gcagcgatct ccagaaggcc gctgcaaggc gacgggtatg tgctggacga ggagtcctgg 
000961 tctgacgtcg actacctgag aacagagaag ccgccagcct gggtgacgtt cctctctctt 
001021 gacattttca catctccatc ttatccataa attcaagaaa acttttaccg tacaatatat 
001081 actaatatat gctactacta gtatgtgctg ccagtacaaa caattcaaag atttttatga 
001141 atatttcctt gtgctttaat atattatagt ataaaattaa agggggtaaa attgtctttc 
001201 catactattg gatgagggta attatgtaaa ctcacaactt atagcgaaat actccctccg 
001261 ttaaaaaaaa atctcgtaac atcctagagt gtctagattc gttttactag aatagtagga 
001321 tgtgtcataa gaggttgagt tatttaagga cagagggagt agagataggc attattttca 
001381 ccaccatgag acactgcgct gttgcaaact agaatgaaaa ttactaaaat accattttta 
001441 atttgataaa aattcttaaa atactcagta tattggaccg aaaagttctt taaatttacc 
001501 aacgaaaata agcttgcacc caattggcaa tggcatttgc gtttgcaggc gtacagtgtg 
001561 tccaaggtgc ttttggagaa ggccgcatgc aagttcgcgg aggagaacaa catgagcctc 
001621 gtcaccgtgt tcccggtgtt caccttgggc gcagcgccgg cgccggtggc gaggacgagc 
001681 gtccccggca tcctctcctt gctatccggt gagctagaag caccagcaac agcaatcaaa 
001741 tcaacaagct agctcccaca aagggcctgt ttggggggag cttctagctg ctgcagtata 
001801 ttctagaatt agaagttgct ctaaacagtt cagcttttga tttagattat aagaagatat 
001861 aattgtaaaa tccaaaaaat gaagctggga aacacaattt ttccagattg taatcttaaa 
001921 actccaaaca gaccccaagt ctcaacactc tttgcaacgc gtgttacaca gtttaagttg 
001981 gctgctgttt ttttactact acttctcagg tgatgagacg catctcgaag tcctgaagcc 
002041 cctgcagtgg gtcaccggct ccgtgtcgat cgttcacgtc gacgacctct gccgcgccga 
002101 gatattcctc gccgagaagg agtcatcgtc attgtcgtcg gcagagtcgt cggcgaggta 
002161 catctgctgc agcttcaaca ccaccgtctt ggcgcttgcc cgtttcatgg ccggaaggta 
002221 cccgcagtac aacgtcaaaa ccgaccggta cgatcgaatt gttgaccaac ttggaaatcc 
002281 aaaatagata aatattgttg tgttcgatct gacgagcgag tgatcgtctc tgtatctttg 
002341 cagcttcgac gggatgcctg agaaaccgag agtctgctgt tcgtcggaga agctgatcag 
002401 ggaagggttc gagttcaagt acacgaatat gggcgacata ctcgatgacc ttgtagagta 
002461 cggcagggcc ctgggaattc taccacattg aacgaatagc tgatgctgct ctaccttcaa 
002521 cctagctgtc acgaggaccg aactggagta tgcgcttgcg aaataagtga tcagtgtttt 
002581 taaagaaaaa aaaatagtac agtgttttaa gatgagccta atacacagtg gataatggca 
002641 atgaagttta atacccttag a

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK250489 FLbaf80c24 1395
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ670078 whkv20c04 785
more... (Total Hit Count: 9 )
/rice/oryzabase