cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK066495     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0584600 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 30,030,442 -  30,034,897  ( + ) ;   4,456(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 30,030,442 -  30,030,920 ( + ) ;   479 (bp)
Exon 2 Location 30,031,026 -  30,031,497 ( + ) ;   472 (bp)
Exon 3 Location 30,032,024 -  30,032,167 ( + ) ;   144 (bp)
Exon 4 Location 30,032,256 -  30,032,408 ( + ) ;   153 (bp)
Exon 5 Location 30,032,554 -  30,032,669 ( + ) ;   116 (bp)
Exon 6 Location 30,033,145 -  30,033,312 ( + ) ;   168 (bp)
Exon 7 Location 30,033,792 -  30,034,016 ( + ) ;   225 (bp)
Exon 8 Location 30,034,437 -  30,034,897 ( + ) ;   461 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os04g0584600 Os04t0584600-01 201924 J013074H04 1819 LOC_Os04g49510.1 AK066495 35391 AP008210.2 255675107 BAF15584.1 113565241 NC_008397.2 297603645 NM_001060205.1 115460139 NP_001053670.1 115460140
Os04g0584600 Os04t0584600-01 201924 J013074H04 1819 LOC_Os04g49510.2 AK066495 35391 AP008210.2 255675107 BAF15584.1 113565241 NC_008397.2 297603645 NM_001060205.1 115460139 NP_001053670.1 115460140
Os04g0584600 Os04t0584600-01 201924 J013074H04 1819 LOC_Os04g49510.3 AK066495 35391 AP008210.2 255675107 BAF15584.1 113565241 NC_008397.2 297603645 NM_001060205.1 115460139 NP_001053670.1 115460140
Os04g0584600 Os04t0584600-01 201924 J013074H04 1819 LOC_Os04g49510.4 AK066495 35391 AP008210.2 255675107 BAF15584.1 113565241 NC_008397.2 297603645 NM_001060205.1 115460139 NP_001053670.1 115460140


Chromosome: 4 ,  position: 30,030,442 - 30,034,897 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gttgcgctcg ctttccccca aacgtgaccc ggccgggagg gagaagtcgc catgaagcag 
000061 cctcccgctg ctgctttctc tctctcgcct cgttaaaatc tctcttccac cccgaacccc 
000121 atccagttca gttccctctc gatcgcttcc cgtgctctcg ctctctcgct tgctagatca 
000181 gagattcccc tctgcggcgg ttgtgaggtt tccgcttcgg ctcgctagct agctctgctg 
000241 tttctgtgag agccgggagc accaaccgcg cgtggggtgg gtgcccggag ctttgatgcg 
000301 cgtggccgcc ggtttctccc cgtcgtttga tgggcaacgc atgcggcggt tcccttagat 
000361 ccaagtacct gagcttcaag cagaccgcgt cgcagcgcca cgacaccgac gacaacaaca 
000421 acgccgccgc ggccgactcg ccgaagaagc cctcccgccc tccagcagcc gccaagacgg 
000481 acgaccaccc agtctccgcg tcggcgccgg ccgccgccat gaggcgcggc caggcgcccg 
000541 ccgacctcgg ctcggtgctc ggccacccca cccccaacct ccgcgacctc tacgccatgg 
000601 gcaggaagct cgggcagggg cagttcggca ccacctacct ctgcaccgag ctgtccactg 
000661 gggtggacta cgcctgcaag tccatttcca agcgcaagct catcaccaag gaggacatcg 
000721 aagacgttcg ccgcgagatc cagatcatgc accatctctc gggccacaag aacgtcgtcg 
000781 ccatcaaggg cgcctacgag gaccagctat acgtgcacat cgtcatggag ctctgcgccg 
000841 gcggcgagct cttcgatcgc atcatacagc gcggccacta cagcgagcgg aaggccgccg 
000901 agctcacgcg gatcatcgtt ggggtcgtcg aggcctgcca ctcgctcggg gtcatgcacc 
000961 gggacctcaa gccagaaaac ttcctgcttg ccaacaagga cgatgacctc tcgctcaagg 
001021 ccatagattt tggtctctca gtcttcttca agcccggtaa gctacttatg cagaacacaa 
001081 aggctttaaa ctgtgtttta atccactatt ccgatgcaaa attggtgttg cgattcgcaa 
001141 atattgtagc gtcacattag agttaacatg catcggttaa tccattgtct gaagaaaaaa 
001201 aaatggaggc aacatgcaac tgcaattctc agtttctgaa taattagttg ggcatatagt 
001261 ggaacattca agggtagcac tacagcagtg ggaacattgt taatgagttc attgcatcct 
001321 gcaaggtctg aaatacacgt tcgttgggga gcagctgaat ggcagagtaa actgatggaa 
001381 gctagttcac tgggaggatt tctgagttaa atgtagtgga aaacgatgga agctgaacga 
001441 catcttgttc taataaacat ctgtaatgct gtattctgta ttgtggggaa tttgatgttt 
001501 ccataagcta aattaggtta ctgtaggcat atttatatga gcttgtgcct ccttttattc 
001561 ttcgtcttct tttccatctc aggtcaaact tttaccgatg ttgtcggaag cccatattac 
001621 gtagctccag aagtgttgtt gaaacactat ggaccagaag ctgatgtatg gactgcaggt 
001681 gtcattctct acattttact aagtggtgta cccccattct gggcaggtaa attttgattt 
001741 cccccttcaa ttaacctggg aagcttgttt tctgatgatt gtagcttgac atttttcgta 
001801 tgtatacaat gcagagacac aacaaggaat atttgatgct gtactaaaag gtttcattga 
001861 ttttgattct gatccttggc ctgtgatctc tgagagcgca aaggatctta taacaaaaat 
001921 gctcaatcct cgcccaaagg aacgcttaac agcacatgaa gttctatgta tgtttctttt 
001981 actatatttt ttttgacaaa attcttttac tatgttgtac tcgtggtctt atttttctct 
002041 ctaatgccta tccaatcact tgacacattt gcaactgccg ggagaaaatg taacacttca 
002101 actcttgctc aggccatcca tggattcgtg atcacggagt tgctccagat cggcctcttg 
002161 atccagctgt cctatctcgc atcaagcagt tctctgcaat gaataagttg aagaagatgg 
002221 ctttgcgggt acgcatgata actttaagct taagttttaa attaccagct ttgtgataca 
002281 ttggcttttt tttttctcta caatagactg tttattttgc tctatgataa gcttttcgcc 
002341 taatctttca acttgaactg aatgcataga aggtgacctt ttcactgcca gctgttgaca 
002401 agtttttgta gtgactttta ttcactaaaa aatagtacta tactcaaagt ggtttctttt 
002461 gggggcaata ctatgtcttt ttgttgtttc tgttgaacgg tcacccaccc accatattta 
002521 ttaaatgtga ccggatttgt tataacacta gggaggtatg atggtttgat catttctttt 
002581 cagtctcccc ttaatactag ggagctattg aagcaaacca tgttgaattt tggaacctgt 
002641 actgttggtg aagcataatt agtgggtttt gcatttatga acaatttgtg tttatcctac 
002701 caggtaatag ctgagagtct ctcagaggag gaaatcgctg ggttgaagga aatgtttcag 
002761 actatggatg ctgataacag tggtgcgatc acatatgatg agcttaaaga aggcttgaga 
002821 aaatatggct caacacttaa ggacaccgag attcgtgatc ttatggatgc agtaagttaa 
002881 cttcaaccta tttgaatgct gctttcgatt tcttctgtgt tagtgactta tattttgaag 
002941 atacttaagg accttgaact taaagttacc ttaaaacatt ctgaataaaa tgccttttgg 
003001 tgtcatatta cttataagtc ggtcgagact tgagaaactc ttggttaaaa aaagaaagat 
003061 atgagaaact caagctgctt cctgcctcac aagattactt gacttcatgg agaagcttga 
003121 gcgcttaaga gagaagtcat tacccataca ttttcctttt tgttggctgt tttctttaga 
003181 gtatctatga ttagaaaaca tgcagcaggc agatcttgcc ttcttaaatt tctttgtagg 
003241 ctgataactt cagcctcatg attgtctttc tactgcaaac atttcaaaaa caggttaaca 
003301 tggtaaatca agaagcttac attgtccctt ttgttctgtt gtttcatcag gcagatatag 
003361 acaacagcgg aacaattgat tatatcgaat tcattgctgc aacattgcat ctcaataaac 
003421 tggagcgaga ggaacatctt gtggcagctt tttcatattt tgacaaagat ggaagtggtt 
003481 acatcacagt ggatgaactg cagcaagctt gcaaagagca taacatgccc gatgcttttc 
003541 ttgatgatgt catcaatgaa gctgatcagg acaatgtaag tatagtgttg atacctcctg 
003601 atgtgctata taactatgtt atatattatt ctggtatagc tgggatgtgt acaaaaatga 
003661 atgtgcaagc agcggatgca ataaagtttg ttcaattagt taagacaatt aaaggctttg 
003721 cattggattg tttagtattg aggtggaaaa ccaaccatag tacctgaact acctaggtct 
003781 tgaaactctt tcaatccatt attgggatca catatgctct agtaggtggt tagctgtcca 
003841 gtcatgtgct ttacttaaca aaggcctagg gacttctctt caataaccag cagaattcat 
003901 tttgttactt cattaatgaa tgtttatggt tatgttagta gcaaaaagaa gttagtgcca 
003961 tgacttgttt gcctaatgtt gctccctttt gtcaggatgg gcgcattgac tatggagaat 
004021 ttgttgccat gatgaccaag ggcaatatgg gagtcggacg aagaacaatg agaaacagct 
004081 tgaatatcag catgagggac gcacctggtg cactctagac ttccacgatg tacagcttac 
004141 ggattttagc ttcttcctgt cttcctgccc aacgaactcc tgcgattttt tagcgttgtc 
004201 agatgtccgc ggatgtgttt ttctggtggt tctgatttaa cttgtcaatt gattccatgg 
004261 aatgcataac aagatgtcca tgccacgctc aaacgaagct gggttgtaaa tctctcgtac 
004321 gccattgctc aactctgaag gtgttcggtg aactagctcg tattctttgt gttgcaatgg 
004381 atgaacttat actggctgtg ttgggtgtaa ttgcattgcc aacatttaca ggggcatgtg 
004441 agatcccgct ttatcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV914312 bags5k05 671
more... (Total Hit Count: 13 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ663698 whkp17f20 792
more... (Total Hit Count: 98 )
/rice/oryzabase