cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK065665     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0629100 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 32,501,909 -  32,506,514  ( - );   4,606(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 32,501,909 -  32,502,309 ( - );   401 (bp)
Exon 2 Location 32,502,419 -  32,502,475 ( - );   57 (bp)
Exon 3 Location 32,502,566 -  32,502,642 ( - );   77 (bp)
Exon 4 Location 32,502,746 -  32,502,815 ( - );   70 (bp)
Exon 5 Location 32,502,882 -  32,502,951 ( - );   70 (bp)
Exon 6 Location 32,503,086 -  32,503,140 ( - );   55 (bp)
Exon 7 Location 32,503,263 -  32,503,311 ( - );   49 (bp)
Exon 8 Location 32,503,516 -  32,503,603 ( - );   88 (bp)
Exon 9 Location 32,503,952 -  32,504,082 ( - );   131 (bp)
Exon 10 Location 32,504,449 -  32,504,480 ( - );   32 (bp)
Exon 11 Location 32,504,644 -  32,504,756 ( - );   113 (bp)
Exon 12 Location 32,505,008 -  32,505,312 ( - );   305 (bp)
Exon 13 Location 32,505,415 -  32,505,500 ( - );   86 (bp)
Exon 14 Location 32,505,617 -  32,505,692 ( - );   76 (bp)
Exon 15 Location 32,506,269 -  32,506,514 ( - );   246 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os04g0629100 Os04t0629100-01 201041 J013041I04 988 LOC_Os04g53700.1 AK065665 35846 AP008210.2 255675107 BAF15879.1 113565536 NC_008397.2 297603645 NM_001060500.1 115460729 NP_001053965.1 115460730


Chromosome: 4 ,  position: 32,501,909 - 32,506,514 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atagctcgaa cacgtatgtt catatccaca cctctccccc aagtacgaga caaggtctcg 
000061 agaacaaaac cccccaaacc ccacggcggc ggcggcgagc ggcggcggaa gaagcagccg 
000121 caagaggcag cagctcgcgc tggcggcggc atgggtggga gcagcgcaag cccgtgtgac 
000181 ctggacaggg agttcgcgcc ccaaatcgcc cagctcctcg ccacccctcc tctccaaccc 
000241 gcgcaggtac gttttctttt tccttccctt gcccatccat cctccgggtc tcaaatctat 
000301 ctgcttggga attgcttgtg ctgcgattat tgtttttccc tgtagaaagg ttgggtaatc 
000361 attgtcggga atttcgttat aaggaagtga tactatgatg ggtatatctt actatgattg 
000421 gtttcagtta tcttactgag aaaggaggat ttctttttgg tccgcatgga tggttttttt 
000481 tagattggtg agatgagagg cgaattgttt agtttacaac agtaacggtg tagtttaatg 
000541 ttttatttgc agaagtacaa tcttaagttt gtcttttttg ggtatcccag ttagtgtgta 
000601 gtgaatgtag ctcgatggag gtatcaattc gacagaatag aaacaatctt ttgtgttctt 
000661 ggcttctttc tgtgttgcag ttacaattgt ctccttgaag ccagtaaaat tgtagtaaat 
000721 cttttatggc tttttttctc cttccttggt tactttagtt catgtattgc tgacgatctg 
000781 tagctcccat ctgacacaca gctatgctac ttttgttttc aggaatacta caatgggctc 
000841 atacagtcca ggaaacatga tggtataaga gtgaacttca gcagcaagca tgggaaaggt 
000901 actggttact gaatacttat atatcttgtg caatgcaatc cggcaaactt ggagtgcttg 
000961 tataaagttg gtgtcgggta aaagccaaga tacttaacca gttggttctt gcaggtgttt 
001021 gtgcgaacaa ggagtttgca gaaggggacc ttattctgaa ggatcaaata ttggttggtg 
001081 ctcagcacag tcttaacaag gttcgtctgc ttttgaagtg atcctaggta tttgttccct 
001141 tctatttttt gtgtgaactg ctcctccctg aagtgtggtg tccattttgt gttttatttc 
001201 agattgattg cgctgtgtgc agttattgct ttcgcttcat tggttctata gagttccaga 
001261 ttggacgaag attgtattgg caaagcgttg gttcaagcag tgactgcact aataggaggc 
001321 attgccatga gagtgatttg ggatcgagtg ccagttcttc tggtgcaaca aaggaaaaca 
001381 gtagtacttt gccagaagag gtcttaggat cacttattac tggtgacatg tcactgcctt 
001441 tcacagacca ttttagtttg cctcaagttg ttccttgtcg tggatgtgag gaagaacgct 
001501 actgcaggtt tgagtcacta accattttac agttcacact ttcttttggc tgcaacaccc 
001561 aaagatgtta ggaattttgt ttgaggcata aatattttgt tgatcaattc attctccatc 
001621 ataggttata gttgtcggtc gtgttaaaac ttaaaaccta attatcttat cagaacatgt 
001681 aacttgttct tgccgtctta gatagaaatg taatcttggg gtaaaaacat aacttgttga 
001741 ttctgcattt ttgtttagcc aatcatgtgc tgattccgac tgggaaactt atcactcttt 
001801 gctgtgtact ggatctaaga ctgaaccatc ccagagatct gctcttcaga aattcataga 
001861 acatgcaaat ggtaagtgca gtatgcagtg atcattatat accatcatta cgaatttatg 
001921 ttgtgttcac tattcattaa atgcagcatg cctagatcaa ttgttcctga ttagtgatga 
001981 ttgtgattga ggttgtcagt ctgttatctg ctactgacca atctttattt tcagggtcca 
002041 atgatatttt tcttgttgct gccaaggtat gtgatagaaa tatagattaa tgtttagtgt 
002101 actaagcact aaacatcgtg ttatgtgctc atctcagatt ctaatattct ccaaaagttt 
002161 tatggggata ctagaacttt gccattgtcc atggctaata caaaaagcat tcaagcatca 
002221 cacttgagtt ggtactgtta tcactaatgg ctgtcagcaa tctacttatc aatgcaccag 
002281 gacagactat tgcacaagac gagttttagt agctatatca agaacatccc caaacaaaag 
002341 attcaattgc aatttcctta ttgctaccaa ttgcagtcaa tttaatatct cctgatcatg 
002401 atgcatgagc tcgatacaat tttacatgtc aggctatcac tttcactctg ctgaggtaca 
002461 agaaactcaa aacgcagcct gaatttcaaa ataacacaga tgaatcaaac ttttctttgc 
002521 ttatggaagc atggaaacca ctttcgatgg gctacaaaaa gaggtaaagt catgaattcg 
002581 catgcaacta ttcatcccct ctgataaagt agctgcgcgt atggcactac cagcagtgtt 
002641 attttaatgc acaatcgata gtttcttcat caagtgtata tcaataattc aatggtacta 
002701 gtatatttcc actcttctca tttataacag tcaataagat ctctgttgca tggttgcata 
002761 ttttgttctc tttttttgga tttgttggca agatgttatt ttcagctcag tgtggctttc 
002821 actaccttgc tctagctcta caagatcctt tgagttgttt gcattgttgt tccaccctaa 
002881 tatgtcccaa aaaaaaaaaa tcttgttgca ggtggtggga ctctgttgct ttgcctgagg 
002941 atgttgattc ctgtgatgaa gatacattta ggcagcaaat tagggatcta gcacttacgg 
003001 taattatgct gtcacatatt tcattctttt gaaactatat aggtattcta ttcacaatat 
003061 tgtgctctga aacgaagctt tattcactag ctcgtcagtt aaaatataaa aatggcacac 
003121 aagaagtggt tattgttttg attgaaaagt gtcccacata ccaatggatt gatgggcaga 
003181 tcattatctt ctgtgtttcg cagtcattgc agcttctcaa ggatgctatt tttgattctg 
003241 agtgtgcacc ctgtatcctt tttggcatat actagatcag ttcatatata taaataagta 
003301 gcttcccttc acattcaagt aatcaagttt cattgactca cgtaaaaaaa aacggtcacc 
003361 ttgacatttc ctagtgttct cacttgacgt gtatggccat ttaattggca tgtttgagct 
003421 gaacaatctg taagtaaatc taattatttt tcatttgtat atgtgcatta catactctgt 
003481 cattgtttct ttccatcaac agaaataagt tctgtactgc atttgatgta ataacctcaa 
003541 tatatttcca tcttttattc cagtggtttg gttgttccgt ctccagtgga agactatttc 
003601 atacatattg atgatcttcc agatgatgag aaggtatttt cactggttag ccttagcttt 
003661 tcttgtggca ttgttaatct gaagtgcaac atatcccagg aggaagctga aaaggttaca 
003721 aggccatttc tagatgcttt aggtgaagac tatgcagctc cttgtgaggg tatgtggagc 
003781 ttcttcccaa gtttatctcc ccccacagta atgtcatttt ctatttaccc agcagtattc 
003841 gttcattctc ttgtgaattt tctcgttggc agggacggca ttctttcctt tgcaaagctg 
003901 tatgaatcat tcatgttgtc caaatgctaa agcatataaa agggatgagg taatctatat 
003961 ttcttccagt tgattcgctc atttttcaca ccaaattgcc agtcagcaat ccgacaaaac 
004021 cattgaacta ccgttgcagg atactgatgg taatgcagtg ataattgctc tggagcctat 
004081 caagaaggac gatgaggtac tgagctgtta acgcttatct caaatatttt ttttcttgtg 
004141 ctgccagtga aaaaagaaaa cattgaaaac gttgttttgc caagtactaa ctgtgaaaat 
004201 tctagattac catatcctac atcgatgagg atgtctccta cgaggagagg caggcggagc 
004261 ttgcagatta tggattcatc tgtacgtgcc ctaggtgcca agaagaaaag cccaactgaa 
004321 caagatccac agtttggagg ttcctgaaat ttattttttt ggtgtggaat atgcaattga 
004381 agttttgacg actccattta ttttattttt tttgtctagg atatgcaatt gagattttga 
004441 caactccaaa aatgttagga taggatatgc ggaaagaatg atatgatacg tacttatttg 
004501 agtggatgct ggattttgct gtgctaatgt tggatgctgc agaaagtttt tattccttct 
004561 gttcagttga gatttttcct tttgtgaaaa taacacattt ctggga

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ847132 whatlal5h15 768
more... (Total Hit Count: 3 )
/rice/oryzabase