cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK064925     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0442000 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 22,229,232 -  22,234,845  ( + ) ;   5,614(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 22,229,232 -  22,229,665 ( + ) ;   434 (bp)
Exon 2 Location 22,230,352 -  22,230,467 ( + ) ;   116 (bp)
Exon 3 Location 22,230,595 -  22,230,690 ( + ) ;   96 (bp)
Exon 4 Location 22,230,811 -  22,230,867 ( + ) ;   57 (bp)
Exon 5 Location 22,231,050 -  22,231,202 ( + ) ;   153 (bp)
Exon 6 Location 22,231,336 -  22,231,420 ( + ) ;   85 (bp)
Exon 7 Location 22,231,679 -  22,231,769 ( + ) ;   91 (bp)
Exon 8 Location 22,231,906 -  22,232,070 ( + ) ;   165 (bp)
Exon 9 Location 22,232,395 -  22,232,514 ( + ) ;   120 (bp)
Exon 10 Location 22,232,602 -  22,232,686 ( + ) ;   85 (bp)
Exon 11 Location 22,232,816 -  22,232,984 ( + ) ;   169 (bp)
Exon 12 Location 22,233,283 -  22,233,755 ( + ) ;   473 (bp)
Exon 13 Location 22,233,832 -  22,234,022 ( + ) ;   191 (bp)
Exon 14 Location 22,234,112 -  22,234,845 ( + ) ;   734 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os04g0442000 Os04t0442000-01 J013000N16 200190 J013000N16 189 LOC_Os04g36054.1 AK064925 35947 AP008210.2 255675107 BAF14793.1 113564450 NC_008397.2 297603645 NM_001059414.1 115458557 NP_001052879.1 115458558 Q0JCZ4 ARFI_ORYSJ


Chromosome: 4 ,  position: 22,229,232 - 22,234,845 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 caaaagcctc aaagcccaag agaccagggc ggctacctcc tcctcctacc accaccgcca 
000061 ccactagtcc ccccccctcc cccttcagcc aaagcctgcg actatccgca acctcaacct 
000121 caacctcacg cagctcccgc gccaaccgcg acctcccgga tccggccacg ccgccctttt 
000181 ccggcgagat ccacctgcgg gaattccgtg gttgttggag gcgccgcggc cgatacaggg 
000241 cggggtgcgg ttagatccat ggagatatgg agatggagct gagctgagct agcagcggta 
000301 gtacagatcg tggctcgcgc gtggcgtccc tgtccgttgg ttcccggcgg gtggtgcttt 
000361 tgggaggagt cgaggaggag gaggaggagg catggccgcc gcgatggaga tggcggcgaa 
000421 tccaggtggt tcaggttcga gttcgtgcct ctcccaccca tcgccgcatt tcccggtgga 
000481 gttttttctt gccccccttt tttccggtag ccgccgggct gtggcctggt tgaaattttt 
000541 ggcggtgctt tggcgtggaa aagtttggtt cgtttgagac cgagacaata gttgatttga 
000601 gtggacttga gtagttgact ggcttgtgtg ttgaaaaggt gccgaaattt ccctctaatt 
000661 ttgagccgat gtcaccgaac caaaacgaga aaaattaggc aatccgttcc cttctttttt 
000721 tgcttgatga gtagttgttg tcacccttgc tgatatgggt aaactctttg ttcccacgat 
000781 ttatgatgtt tgtgtgatat ttttttttgt ttatttagtt ccgtaattcg atgcttctga 
000841 attgtgatcc gtcaaatagg aaaagccgat tgatgttttc gctgctaatt ttgttcgatt 
000901 gtttcagttt agtttgtagg tgatgcattt tttttttgtg gctagtttag ctgatgaatt 
000961 ggcgcttctc tgctgatgat aaactgtgtc ggtttagtgg atctttgttc gcttcaacta 
001021 tgtttaggat ttctcataat ttatcaaact tgttttctca attcgtcttt cttgttctga 
001081 tgactcaatt ttgttttgcg attcaattgt ttctgtgtag gaacctgcag cgatgcacta 
001141 ttccgggagc tatggcatgc ttgtgctggt ccgttggtca cggtcccgaa gcgcggcgag 
001201 cgcgtctact actttcccca gggtcatatg gaacaggtgc tcaccgatcg gcttgatcta 
001261 cgagttcttc atgccaaatc tcatcgatta aacttttttt ttacttagtt tacgtttttt 
001321 ttttcacctc aaaggctcaa actgatcacg gtttgttcta tagcttgagg cgtctacaaa 
001381 ccagcagctt gaccagtacc tgccgatgtt caatctacca tccaagatcc tatgcagcgt 
001441 ggtcaacgta gaactccggg tcagtgtttc tttaatctgt ctggtgtaac ctcccatgtg 
001501 agtgtgctgg aaatcgccag tccggttact gtagctcgaa atattattca atgcttaccg 
001561 gttgagttct gcaatgcagg cggaggctga ttcagatgaa gtttatgctc aaattatgct 
001621 gcaaccagaa gctgatgtga gtatattctc tacccccctg ccaatatgta aggggggata 
001681 tatattgctt ttgcaatgca tgctatattg ctactgtagt atttctactt tcttattgta 
001741 gcagccttta atggttataa atcatgtcct tttgtcattc acattgattg atttgtttgc 
001801 ttgcatttgc ttgttcagca aagtgaactc accagtctgg atcctgagct tcaagatctt 
001861 gagaaatgca cagctcattc cttttgcaag acattaacag cttcagatac aagcacacat 
001921 ggcggtttct ctgttcttag gaggcatgct gaagaatgcc ttcctcagct ggttagtatt 
001981 aaaagcatat tatgtctcca caggttgtta agattgttat atccaagtgt caaatatctt 
002041 cttgagttct cgtatgtagc agtaccagtt tatgatatta ttgaatagtg tggttgcttt 
002101 gcaggacatg tctcagaatc caccatgtca agaactggtt gccaaagatc tccatggaac 
002161 tgagtggcat ttccgtcaca tctttcgtgg ttagcttgaa tcttatcatt cgggtgttct 
002221 gttatgcttt caataaaagc agggccagcc atgtgtggtc taaaaaaaat ctcatcattt 
002281 ggcatgattc ttccaatctt gttggcacta tgttgtcctt attattttgg tgtaacactt 
002341 tatttctcag ccacacatgc tcaccattgt gtagtagcat gtggaatata taagctgtat 
002401 atcactttca ggatcgcaat ctcatatctt tccatttttt tttacaggac aacctaggag 
002461 gcatctgctt acaaccggtt ggagtgtctt tgttagctca aaaagattgg ttgctggcga 
002521 tgcatttatc ttcctgaggt acacaatact aagcatgtaa cttgaaggca ttaggtgcac 
002581 ttgcatctat ctcatgactc aatttagttg cggatgaatc tagtctacag ttattactgg 
002641 tttcttccgc taaatatcgt tgaataactt tcaggggcga aagtggtgag ctacgggttg 
002701 gagtaaggag acttatgaga caagtaaata acatgccatc atctgtcata tcaagccaca 
002761 gcatgcatct tggagtcctt gcaacagctt cccatgctat ctccactgga accctctttt 
002821 ctgttttcta caaacccagg ttcaataaat tctcattttg gttatgccct ttgtttctgg 
002881 ttctttattg tattgagtta tggtgcaaat tttaatagta atggttgacg tttagaccta 
002941 tataaaactg aattactgaa atatggcatt attggaatat tgtttactct gctgagtgta 
003001 tgatcattat aaaaataaac ttatgtatga tgatttaccc atccagtcat gcattgtttt 
003061 tgataaagtg gagtaatact tgggttatcc taattagcat tatgatgtgc aagtttacat 
003121 tatcttgcag actaaactta atgtacatct attatgttcc cagaacaagc cggtctgagt 
003181 ttgttgtgag cgttaacaag taccttgaag ctaagaagca gaacttgtct gttggaatga 
003241 ggtttaagat gagatttgaa ggtgatgaag ctcctgaaag aaggtacaat cttgagtttc 
003301 tttctgcata attatgctag ctttactcct gtagtttacg gtgcatatca taaacatttc 
003361 tgtttcacag gtttagtgga acaattattg gtattgggag tgtgccagca atgtcaaaat 
003421 ctccatgggc agattctgac tggaaatctc tgaaggtaat tcatatttta gttttgaatt 
003481 ttgatggtta aattggaaga tacttttttg agatgttttt tgtccactta tgtcttggtc 
003541 tcttggttgg tccagatctg attctgtcct gtaattattc gtaggtccaa tgggatgaac 
003601 cttcggctat tgtccgtcca gatagagttt caccatggga actggaacca ttggatgcga 
003661 gtaatccaca accacctcag cctccattga ggaataagcg tgcaaggcct ccagcttcac 
003721 cttctgtggt tgcggaactt cctccaagtt tcggtaagaa tgaagtcctg aacacctgtg 
003781 acaattatgg ttctgattct tgattacaag gctcaggtca tagttggtgc acataaactt 
003841 ttatataact tactccctcc gttttacaat gtaagacttt ctagcattgt tcacattcat 
003901 atagatgcta atgaatttat atatataata atgtctagat tcattagcat ctatatgaat 
003961 gtgggcaatg ctagaaagtc ttatattgtg aaaccgagga agtagtgtat tatccagctt 
004021 aacatttcaa tgctggtgcg acttacatca ggactatgga aacccccatc tgaagcagcc 
004081 caaactctct cattttcgga accacaacgg gctcgagaga tatttccttc aattcctgca 
004141 tcaatcttct cagcatcatc acatgttgaa ttcaattcaa agaacgagcc atccatacta 
004201 agcaatcagt tctactggtc aatgagggat tcaaaaactg attctttttc tgctagcact 
004261 aacaaaacaa gagttgaaag aaagcaagaa ccaactacta tgggttgcag attatttgga 
004321 attgaaataa gctcagctgt agaagaagcc ctgcctgcag ctactgtttc aggtgtcggt 
004381 tatgatcaaa ctgttctctc tgtagatgtg gactctgatc agatctcaca gccatctaat 
004441 ggcaataaat ccgatgcccc tggaacaagc agtgaacgtt ctcctcttga gtcccaaagt 
004501 cgtcaagtga ggagctgcac aaaggtgaga gtttgtcacg ttatttccat tttcaagatg 
004561 ctgaagcata caaagaactt aattactttt ccttgtgcag gtaattatgc aaggtatggc 
004621 agttgggagg gctgtggact tgacaaaact aaatggttat ggtgatcttc gcagcaagtt 
004681 ggaggagatg tttgatatac agggggactt gtgtcccacc ctgaagagat ggcaagttgt 
004741 ttacaccgat gatgaggatg acatgatgct tgtcggggat gatccttggg agtaagaatc 
004801 tttacctctt cacatttgta tatttgatgc aagtttttgg catcaaagtt ctaatctgat 
004861 ggtaatgcat gttgttgcag tgaattttgt agcatggtga aacggattta tatttactcc 
004921 tacgaggagg ccaagctgct ggctccaaag tctaagctgc cagtcatagg tgacaccatc 
004981 aaattgagca gtatgaactc atcacatgaa tccgtcgacc tggacaatca tgcctcagtt 
005041 actaacaggg actgctaacc attgactttg ccctaattct gatatgatca tttgaggaaa 
005101 ttccaatgtt tcttcattac tgcttcctgt gctgaagacg caacgccctt ttgtcttgaa 
005161 ttgtggtggt atttgaactg caagtgccag gaagttccca agactggcaa gaccgcctgg 
005221 aagaggcatt ctggcaaatg catgccgttc caaattgttt tgtgttttgg taggagcctt 
005281 ggcgttcttg tctggtgccc agatttaggt aagaagtcct gaacaccaag attgatgacg 
005341 cttcggccct ctccccgttg cttaggagta aataggattt gcatatgtat atatagtatc 
005401 attaggattc ctgattgcct gctattgtga ttccaagtaa tttggatgca ttaatgcaat 
005461 tattattcag taattgttat ttttagcagc aaacctgtga gtgatggtgg tggatgtgtt 
005521 gatcttgcag catttgctac ctttctctcc attgtggaag ccatctgtac ataaacaaac 
005581 tactatcaaa taagtaatgt tgtgctttct aacc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK251666 FLbaf119n03 2720
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ719968 whvd6d13 839
more... (Total Hit Count: 23 )
/rice/oryzabase