cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK064014     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os04g0615000 ( IRGSP 1.0 )
RAP - Chromosome No. 4
RAP - Location, Length 31,711,349 -  31,713,923  ( + ) ;   2,575(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 31,711,349 -  31,713,923 ( + ) ;   2,575 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os04g0615000 Os04t0615000-01 107043 001124H04 12645 LOC_Os04g52479.1 AK064014 37112 AP008210.2 255675107 BAF15780.1 113565437 NC_008397.2 297603645 NM_001060401.1 115460531 NP_001053866.1 115460532
Os04g0615000 Os04t0615000-01 107043 001124H04 12645 LOC_Os04g52479.2 AK064014 37112 AP008210.2 255675107 BAF15780.1 113565437 NC_008397.2 297603645 NM_001060401.1 115460531 NP_001053866.1 115460532
Os04g0615000 Os04t0615000-01 107043 001124H04 12645 LOC_Os04g52479.3 AK064014 37112 AP008210.2 255675107 BAF15780.1 113565437 NC_008397.2 297603645 NM_001060401.1 115460531 NP_001053866.1 115460532


Chromosome: 4 ,  position: 31,711,349 - 31,713,923 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 caagattcat cgcaagattt gctagtacaa agtggataaa ttttcatggc actctgaaga 
000061 ttatgccaaa aactgaccgt tggtttgttg gttagtccta acatctaagt ttgaccagtt 
000121 gagcggtggc cacagctagt ttgaatgcta ccaatgttca ttacatcaaa gcagatgatc 
000181 tgatcggaga ttggaaggag tttctccttc taaatcatat catatcattt gagatactgc 
000241 atactatatg ttggttcttg tgcagattaa agcttctgga ttttacacaa tcctcctacc 
000301 gtttaccagt caaaccttta acatgttgct gtgctctttt tgtgaaattt caacttagta 
000361 ataatatttt gtgacatgca ctcaaactac atactccctc catcccaaaa aaatccaacc 
000421 taggatagga caacaaatct ggacaaacac tttgtccaga tttgctgtga cctatcctag 
000481 gttgttcttt tttgggacgg atggagtact tctgaagcgt tcgtccttat agttctgttt 
000541 cattgtttca ggttgcaagc catgaaactt ttggtacttt gggtgcaatt gtgaaacggc 
000601 gcactggcaa caagcaggtt ggtttcctca ctaaccatca tgtcgcggtt gacttggact 
000661 accctaatca gaagatgttt catccattac cacccaatct tgggcctggc gtttatcttg 
000721 gagctgttga aagagcaact tctttcatca cagatgacgt ttggtatgga atctatgctg 
000781 gaacaaaccc aggtagagca gttacaaatt agctggtcag ggctttatct acaattgttt 
000841 gtctatttaa aaacaatgtc ttaagtaaca ttaaaagaca cttcaactca ctgtataaat 
000901 ataaaaaata agtttcctgc ttcctagttc ccatcattca tattaatgcc ggattgcatt 
000961 ttttactagt tagaaacaaa tcaacattta gttttgattg taaaaaaaac atactatgtt 
001021 tgtgcttttc tggtcattta acacatttac cattttattg attattccaa atgatgtata 
001081 taccagtcta attcccaaac atatatgccg ccccattatg gatttgcaga gacatttgta 
001141 cgagctgacg gtgcatttat cccatttgct gatgactttg acatttccac cgtcacgact 
001201 gtagttaggg gagtcggtga cattggggat gtcaaggtta tagatctgca gtgtccgctc 
001261 aatagcctca tagggaggca agtatgcaaa gttggcagaa gctctggtca cacaactggg 
001321 actgtgatgg cctatgccct tgagtacaat gacgagaaag gaatatgctt cttcacagac 
001381 atccttgttg ttggtgagaa ccgccaaaca tttgatttgg aaggtgatag cggaagcctt 
001441 attatcctga ctagccaaga tggtgagaag ccgcgtccaa ttggaattat atggggtggc 
001501 acagcaaatc gtgggaggtt gaagcttaca agtgatcatg gccctgaaaa ctggactagt 
001561 ggggttgatc ttggccgtct actcgaccgt ctggaacttg atattatcat taccaatgaa 
001621 tcactccaag gttgattctt ttccctctat tcatttgcat tcatcttcag atattccaga 
001681 aatacgttgg actatccaat ttacttgatg ttttcatact actttgtatt gaatctgtac 
001741 acttttgctc cattacaaag ctgacagaat ttgcctacta taaagatgcc gtgcagcagc 
001801 aaagatttgc tttggtggcc gccgttacct cagctgttgg ggagtcttcc ggggtgcctg 
001861 tcgccatccc ggaagagaag atcgaagaga tcttcgagcc attggggatc caaatccagc 
001921 aactgcctcg ccatgacgtg gcggcctctg gaactgaagg ggaggaggca tccaacacgg 
001981 tggtcaatgt ggaagagcac cagttcatct caaacttcgt cggtatgtcg cccgtgcgcg 
002041 acgaccaaga cgctccgagg agcatcacca acctgaacaa cccctccgag gaagaactcg 
002101 ccatgtcgct ccatctgggt gaccgagagc ccaagcggct ccgttcggac tccggatcaa 
002161 gccttgacct ggagaaatga agtgcaaaaa gtgctggttc tgaatttctg attctggttc 
002221 ttcagagttt attgtcattg tggacagcca aaagtagtag tagatcaaaa gacctcatat 
002281 gcagttcaga aaaattgaac ctgcagtaag cttcggtgag cttgaatggc tttggcaagc 
002341 atatcatgta acatgatgta ttattattac tacaattgat tcagcccctt gtaggatgtt 
002401 aggtgctagt cctgcagttt tgctgtgctc atgatcgtga gacctgatat acaccattgc 
002461 cggatccctt cctctttgta gaagaagaag aacaatgtgc agggaattat gataatgatg 
002521 atctttgatc tatttccccc tattattatt taccaattat caggtttcaa ttatc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248497 FLbaf23p14 2626
more... (Total Hit Count: 3 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ645400 whei1n16 578
more... (Total Hit Count: 12 )
/rice/oryzabase