cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK068523     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0227100 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 7,023,297 -  7,029,591  ( + ) ;   6,295(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 7,023,297 -  7,023,700 ( + ) ;   404 (bp)
Exon 2 Location 7,024,627 -  7,024,705 ( + ) ;   79 (bp)
Exon 3 Location 7,024,816 -  7,024,951 ( + ) ;   136 (bp)
Exon 4 Location 7,025,324 -  7,025,398 ( + ) ;   75 (bp)
Exon 5 Location 7,025,513 -  7,025,708 ( + ) ;   196 (bp)
Exon 6 Location 7,025,895 -  7,025,963 ( + ) ;   69 (bp)
Exon 7 Location 7,026,115 -  7,026,254 ( + ) ;   140 (bp)
Exon 8 Location 7,026,425 -  7,026,547 ( + ) ;   123 (bp)
Exon 9 Location 7,027,390 -  7,027,582 ( + ) ;   193 (bp)
Exon 10 Location 7,028,872 -  7,029,591 ( + ) ;   720 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0227100 Os01t0227100-01 204154 J013155K17 3780 LOC_Os01g12710.1 AK068523 44424 AP008207.2 255672756 BAF04382.1 113531999 NC_008394.4 297598437 NM_001049003.1 115435419 NP_001042468.1 115435420 Q5N800 NYC1_ORYSJ
Os01g0227100 Os01t0227100-01 204154 J013155K17 3780 LOC_Os01g12710.2 AK068523 44424 AP008207.2 255672756 BAF04382.1 113531999 NC_008394.4 297598437 NM_001049003.1 115435419 NP_001042468.1 115435420 Q5N800 NYC1_ORYSJ


Chromosome: 1 ,  position: 7,023,297 - 7,029,591 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gccctctcct aaaaccaagg aacccaaccc cacaaaaaag cgtaggacgc cggagtgcga 
000061 aatccttatc cgctcgcggc gacgccatgg ccgccgccgc ggtggtccac ctctccgtgc 
000121 acggccgcct ccgccgctcg ccggagctcc acgcccggcc ataccaccgc ccgtcgctgc 
000181 tccggtgccg cgcgttcaag caggaggccg ataacggcgg ggaggaggct tcgtcgtcgc 
000241 cgccgccgcc gacgacggcc gaggcgcgga ggcgcaggaa gggcccgctg tacaagctga 
000301 aggcggcgat tcaggggctc gccgggtcgc ggtcggcggc cgcggaggcg tacgggggcg 
000361 agtaccagcg cgccgtcgag aaggccgagg agatcttctt ctcggtgagc tccattcctg 
000421 aaccccctca agctcccccg caagcgcagt ttctctacat gataatatga taatatgttt 
000481 atggccgatt ttttcatctg atcgtgtgat ctactagtac gactgccttt aattgttgcc 
000541 acgtatcggg aggctcaacc actcaatgcg ttagcgagcg ctactacctt aatcagctct 
000601 tgcttagctg catatgggaa ttgcacccat cagatgctac agctacaagt gagtttaggc 
000661 gatctatgtt gtttcaatgg gtgttaggat ccaatacact agctgtggca caaatcgatg 
000721 agctgatcaa cactaatcag cttgtttctt actagtaata cagtaggctc cagttactgt 
000781 gaaattctgt aatgtcagtt ccctttatgt ttatgtgctg gagagcaaat tctgcctgcg 
000841 ctaaaattaa tcgcaggcct gtgaagcaat ttgcctgggc agaggatgcg gctcgtagcc 
000901 agaggtgtca ttttgtgtag cctttgttgc ttttgaaact attttaaact tctttgaaac 
000961 tcgctcttga ttaaatttac ttcgcccctc atttatatgg gcctagattc tctggttctt 
001021 gcatctacca ttgtatgggg ggcatgggct gccaggctca tggttttaca tgtccgactg 
001081 taagtgcatg cacaggcctg ctttatagtt caattgaatt gcttcctagg catgctgatt 
001141 ctttgtattg atataaataa aatctccggt atcggctgat tctctaacct aagcacatca 
001201 gtaattttct atttgttgca aacctgaaca gagtggttct gaatttatca ctactgagtt 
001261 gtaggatcaa ctccttttct gaaataggtg ttcttttttt caaattgact tatttccttc 
001321 tccttttcag gttgctacgc aagtaggccg atatgttatc actatgatga gcagcggtgt 
001381 tgtacttgga gttggatttc agttatcagg ttagttacat tcatttgata tattgcattg 
001441 cctttggata cttctgtttt tttccctaca atgggcattt tcagagtttc agtaatgacc 
001501 tagctacctt tctatttagg cggagacagc caaatgaata cactaatttg gtatagttgg 
001561 ctcgggggag taattattgg cacgatgata ggtgcaaaca gtgtcctaga ggaacactgc 
001621 aaagctggac ctcgcaatgt tgtcataact ggaaggtaac ccattttgca ttcttccttt 
001681 cacatgccat ctgaatcttt tgctaggaag catgcatact gtgagtacag gtcaaaggta 
001741 ataatcaaaa ctaatgaatt tattcctaga taggaaatac tatttcacct tctattattc 
001801 tctattttct tatttgatga gtggagtata accataacaa tcaccaagtt tatacgggtt 
001861 ggtgcataga ggagattatg aggtgcagtc atatgaacaa atcattaaag taacctcata 
001921 aacatgttaa tataaacatg acttctcatt gcatcaattg tgagctgatt tcttattagt 
001981 atccatgttc tgcaatcaac attgaagtta tagtttgatt ttggcagcac aagaggatta 
002041 gggaaagcac ttgctcggga gttccttctt tctggagatc gtgttgtaat tgcttcacgc 
002101 aggtggtact catagacatg tagctcaatg tgtgttgttg ttgcatatcc atgatattct 
002161 ttttatgaaa tgcaatgcgt tgtcctagtt ttaaatatcc tattttttga aggcagccct 
002221 gaatcagtcc ttcagaccat caacgagctt gaagagaaca tacaggaggg cttgtcagtt 
002281 gcgaaaaaga aacagagaga aattttgcta catgccaagg ttgttggtac atcatgtgat 
002341 gtttgtaaac cagaagatgt gaaaaagttg gtgaactttg ccaaggatga gcttggatca 
002401 attgatattt gggtaaataa tttactttta catatctatc cccatcattt attctgcatt 
002461 atttcacggt agggtactca gttggatact tggattgagt gcacaagttt ttgtacttat 
002521 aaccttttta ttttgttctg tactgtggca tcgcagaatg tacttaacat gtgctattct 
002581 tcttattctt atgtatagat aaataacgct ggcacaaaca aaggttttag gccactggta 
002641 aacttttcag atgaagatat ttctcaggta cgttaattat cttcggaaaa tcagagtctt 
002701 ttccattcta atagagttca tagaactata ttcgtcatgc aacctgactt agttatttca 
002761 tcttattttt ctttctgctt agcctaaaca acattattgt gtccttttct gtttgcagat 
002821 tgtctcaaca aacctagttg gctctttact gtgcaccaga gaagccatga atgtcatgca 
002881 acaccaacaa aagggaggtc acgtatttaa catggatgga gcaggttctg gaggatcaag 
002941 tacaccatta acagctgtgt aagtacctaa tgatttcaaa tttttaatgc tccactgttc 
003001 gtgtagctct tatactggac agggatattg tcttgtggtt tcttcattgg ctaaaaacga 
003061 gtataattgt attgatgttg ttacttgtgc agtgaaacta aaactgatac tattttgcaa 
003121 acttgcagtt atggttcaac taagtgtggc cttagacagt ttcaagcatc acttctgaag 
003181 gaaagcagaa gatcaaaagt tggtgtacac actgcttctc ctggaatggt ccttacggac 
003241 ctccttttga ggtaacctct gaagttattt agatgcaatt attgatgatt tgcttgttta 
003301 gttcattctg aacttcaata tatttattgc ttggtgcaca tgttgtccaa actccaaacc 
003361 acactttgtg tgatgatagt aaaacaagat aagacttcaa gtgcataaga agttttcagt 
003421 aggatcttta tggaaccaca catattggtt aatcagaatt tcacgctatc ttcattttga 
003481 atttatttta gttaatcaac aatcagaatg tctcctttgt tgaatgggga agagtcaaaa 
003541 ttttgagata cctcgctgcc caaatcttct ttgtttcaat ctcttctttc taggatttga 
003601 tttgtggcaa ctatttctgt agaatcagct tcacattaat tattaagttg cttttgctac 
003661 tacacttcta gctctggctt ttcctatctg ctataatccc gatgacacgg taaactgggt 
003721 gcgtggcggt taatcagaac ctgaaagaat taatgttcca ttcttgtgca aatactctgc 
003781 cttgtaaatc cagttcaaag ttgtgatgtt gcacatactt tatacttgta aggcttcata 
003841 gtttctgtca atatataaat aacttgtgag ataacttcca gatataatta ttacaaatga 
003901 ctaatgcact ggaaagttct aacatattaa tattttttat tggtaatact atatacggag 
003961 aataatatgt tttttaactt caattgatgg tgcatgccac ttcttccata tttatctggt 
004021 cagctcttct gttgccacat gcccaactat gcagactgct ttagttaact tataatcctt 
004081 ctatcttttg cagcggttct tctctgagaa ataaacagat gttcaattta atatgtgagc 
004141 ttccagaaac agttgcaagg acattggttc cgaggatgcg agttgtgaaa ggaagtggaa 
004201 aggcgataaa ctacttgaca ccaccaagga tcttgcttgc cttggttact gcatgggttc 
004261 gccgaggccg atggtttgat gaagaggtat gtttcttctc tatgcagcta gtacttttca 
004321 gctttacctt ttatttcagc aatgccagta tatgaaatat gctgaattcc tgcagaagcc 
004381 atgcgtgcaa acatgattgt tgttttcatt attatgcatc ttgcatgcac ttttcatgat 
004441 attgaacctc aagacttttg agctattatg cttctgaaat agtgaaatat acatttctag 
004501 agaaagagta ccaagctctt ctaccgttgc accaaatgta tatgaaactc attgttgaat 
004561 ataaagaaca atggacatag actattcaaa ttatgcctgt ggtgattttc ttgtaaatta 
004621 tgctaaataa gcagtattcg ttctaagact ggatcaacca ggcgagtcag atcataatga 
004681 agcttgagac cagtgtccag ttctgtcagg tctctacata agtaagagcc ataaataggg 
004741 tctgtcttga tggttcagtt tccaggttca ttatgaccag ctcagtccat cacctttact 
004801 gctagttggc cagagctctt ctggaaggcc ttaggctggt cctcccctca atggcggctt 
004861 caaacacctg gttccaccat ggcttagctc ggtccaacag tctcagtgct attgtttgta 
004921 ctgcatgtta aatatgacat agttaattct cacatgtatt gctggatctc acctagtcca 
004981 catgaaatcc agcaacagat ttaactggag agaatgatag gggttttaaa aagcaactgc 
005041 acccgtcaaa tgattgcact ctagtaatat tttggggctg aaatgggcac aagtatacat 
005101 attgacgttt tttttggtat ctcactggtt tattggctgt gattttggga aagaaaatca 
005161 cctgcaaatt ttggtaccgt cgaagcttct caccattaga ttgacaatta ttaatggaaa 
005221 aactgaatga acacatgtat tattttcgca agatatttag gaaacatgac atttgagaaa 
005281 aaaaaatgct gagaagtggg taataattta attataacgt ttgtgttcct tcagaatctt 
005341 tcacaatata actgaagaaa agtgctgtat acatcagtgt cttttgtgat ggacaatgct 
005401 ccaatcatcc tatgtgcaag gttgaaaatc aaacagatga agtaaaagaa tattatattc 
005461 ttacaaatga gagatcagca taccaagcga ctttatgcat acttcacagt tcataatact 
005521 ttcagtctga tgattaattc atgtgaatgt gtgactgatc ataagcacat tgcagggaag 
005581 agcagtatat gcagcagagg ctgatagaat ccgtaattgg gctgaaagtc gagcacgctt 
005641 ctctttcaca gatgccatgg agatgtacac agaaaacaca tgggtttctg tgttctcgct 
005701 ctctgtcgtc tgcgcattca taattctttc cagctcaggt ggacctcttc caggcacatg 
005761 atcccaggag ttgccaaact agatggctac acacaccatt tttcttcagt acggggattc 
005821 tattatgtac tgatatatga cacacgaaac ttatgaaggg gggaaattga acccagaaag 
005881 cttactgcgt acatacgccc aacggtgaga agcatcagct gccactcacc atttaaggtc 
005941 aagctaacca tgtgctcagt aaaaatgggt aaatagcatt tgttgtgtgg gcattccact 
006001 gtttgtaagc tgacttgtaa aaacgtgtat ctgagctaaa ctgagcacga acagattcga 
006061 tggacaatgt tatctgctgt acatgcatgt agtaatgtag ttttgatgac tgtaattctc 
006121 tggtcgtcgc ttccagttgc acggttgcac cgtatgttgc aaccaccaat agaactgaaa 
006181 gtaagtgaga gtaatcaagc cagcatctgc tatgtatata tatgactcat cagtctgtta 
006241 tatatcacaa ggaaagcttc ttcaaagcta aaagcaaagc tatcagtaag acagt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ676805 whms6e24 724
more... (Total Hit Count: 34 )
/rice/oryzabase