cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK287481     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0277300 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 9,459,492 -  9,464,080  ( - );   4,589(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 9,459,492 -  9,461,625 ( - );   2,134 (bp)
Exon 2 Location 9,463,730 -  9,464,080 ( - );   351 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
MSU ID cDNA
Accession No
Os03g0277300 Os03t0277300-01 J043024K11 303115 J043024K11 LOC_Os03g16920.1 AK287481


Chromosome: 3 ,  position: 9,459,492 - 9,464,080 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 accaaagtcg agagatcgaa gcgaaaaaaa acagagcaaa atcgtcccag cgcgagcgaa 
000061 tcagaagagc aacaacacaa ctcgatcgtt catcagcgga gagcttgatt tgatttgatc 
000121 ggaagagaag aaagatggcg ggcaacaagg gagagggccc tgcgatcggc atcgacctcg 
000181 gcacgaccta ctcgtgcgtc ggcgtgtggc agcatgacag ggtggagatc atcgccaacg 
000241 accagggcaa ccgcaccacg ccgtcgtacg tggccttcac cgacaccgag aggctcatcg 
000301 gcgacgccgc caagaaccag gtcgccatga accccaccaa caccgtcttt ggtaagtgcc 
000361 ccgctccttt gcttccgcct tcaattattt gatttttggt gtcaaaatta tggaattagt 
000421 ttctttttct aatcaaatca aacttggtaa atttaattaa atttattaaa aaatagcaac 
000481 atctaaaaca caaaattatc actacatcta acacctaaca ttaagacctc tattctctac 
000541 cgttacatta cggcttgttt ggtaactcga gggaaagaga ttgagagttt acacgagaaa 
000601 attgatgatg agattaaaat gggaatttga tttttaatcc tatatcttgt ttggtagagg 
000661 cgatggaaat tgatagggag tttagttgga gattagatca ttaataaaaa tggatggatg 
000721 agatttgctt agacaaaata aaggggatct cttccaatta cctgccccta cgcaggtatt 
000781 aaaaaggagg gagttccttc ctcaattccc catcccatcc caccaaaatt tccatgtctc 
000841 tcaaccaaac aaaacactta atagcctcat ccttctgaac tcccaatccc ttctaaaaac 
000901 tccctccaac caaacgtgcc aatgagggct tcaggcccta gttaaaaaaa ataaaaatct 
000961 aaatctaaca tgcaatgtac taaatattaa aatatatttg ttcacatcta tttatattat 
001021 taaagaaata gaaaaaggag cctccacgtc cgctctcatg gcctcgttcg ttctcatggc 
001081 ctagaaattc tcacattaat tggagaaaaa gaaaaagcag agtacatata gaaatacaat 
001141 ttagaaatag ctgaaatttg gaattaaaaa ataaggaata ttagaaaagg agactagagt 
001201 ccatatagaa atacaattta gaaatagttg aaattcagaa ttaaaaaata aagaatatta 
001261 gaagaggaga ctagagtcca tatagaaata caattaggaa ataactgaaa ttcggaatta 
001321 aaaataagga atattagatg tagagtatag agtccatata gaaatacaat taagaaaaaa 
001381 tagaaattcg gaattaaaaa ataaggaata ttagaagtag agtatagaat ccatatagca 
001441 atttaaaact aactaaaatt aagaataaac ataataaaat taaaattaga gttttgagtc 
001501 cgtataaaaa tacaatttac aaataactga aattcgaaat taagaaaaac atgggaagaa 
001561 gagtttaaag tcaatatagg aatacaattt ggaagtaatt gaaatttgaa attaaaaatt 
001621 gaagaatatt gagagatgag tttagagtcc acctagagat acaattagaa ataataaaaa 
001681 ttcagagata aaaataaata tattggaaga agagcctaga gcctatatag aaatacaatt 
001741 tacagaaaat tcggaattaa aaaaagaaat attaaaagac gagtctagag tagatatagg 
001801 aatatatata atttacaaat aactaaaatt tgatattaaa aataattaat aactaacacg 
001861 tatataaaat acaatatgaa tactacatat ttgtagtttt gtaaacttat tgcaaaattt 
001921 aaaattatga tgttattcta atatatttga ataatataat gagaaaacat atatgctatt 
001981 acatgagaaa atatactgat gctagccgcg caatctgcgc gggccaccat gctagttcaa 
002041 aatatagctg tgttttttct ataaacctga tcattttttt aaaaaaataa aatatttgat 
002101 taaaacaatc aaaacaacag ataatatgaa actgggaagt attcatgagc cgtaggagtt 
002161 acacttgcaa cacatcttgc tctgtttcct ctgttttggc ggcagatgat gaggatcact 
002221 agcatgaact tgtaatttaa attcacttcg attgccgcaa cctgattact gtaagatcat 
002281 gtagttgcgc acacggggga attgaaaaat aactcaaaaa tccagttagt acaattttat 
002341 atgggtaaca aaattttata tgggtaacaa aaataactca caaatccagt tagtacaatt 
002401 ttatatgagt aacaataatg ttcaaatgtc gtaacacgct gtgtgtgtct tgcagatgca 
002461 aagcggctga tcgggcggcg cttctcggac ccgtcggtgc aggcggacat gaagatgtgg 
002521 ccgttcaagg tggtgcctgg cccagccgac aagccgatga tcgtggtgac gtacaagggc 
002581 gaggagaaga agttctcggc ggaggagatc tcgtccatgg tgctcaccaa gatgaaggag 
002641 atcgccgagg ccttcctcag caccaccatc aagaacgccg tcatcaccgt cccggcctac 
002701 ttcaacgact cccaacgcca ggccaccaag gacgccggcg tcatctccgg actcaacgtc 
002761 atgcgcatca tcaacgagcc caccgccgcc gccatcgcct acggcctcga caagaaggcc 
002821 gccagcaccg gcgagaagaa tgtcctcatc ttcgacctcg gcggcggcac cttcgacgtc 
002881 tccatcctca ccatcgagga gggcatcttc gaggtcaagg ccaccgccgg cgacacccac 
002941 ctgggaggcg aggacttcga caaccggatg gtgaaccact tcgtgcagga gttcaagagg 
003001 aagcacaaga aggacatcac cggcaacccg agggcgctcc ggcggctgag gacggcgtgc 
003061 gagagggcga agaggacgct gtcctccacc gcccagacca ccatcgagat cgactcgctc 
003121 tacgagggca tcgacttcta cgccaccatc acccgcgccc gcttcgagga gctcaacatg 
003181 gacctcttcc gccggtgcat ggagcccgtg gagaagtgcc tccgcgacgc caagatggac 
003241 aaggcccaga tccacgatgt cgtcctcgtc ggaggctcca cccgtatccc caaggtgcag 
003301 cagctcctgc aggacttctt caacgggaag gagctctgca agagcatcaa ccccgacgag 
003361 gccgtggcgt acggcgccgc cgtccaggcc gccatcctca gcggcgaggg caaccagagg 
003421 gtgcaggacc tgctcctcct cgacgtcacg ccgctctcgc tcgggttgga gacggccggg 
003481 ggtgtcatga ccgtgctgat cccgaggaac accaccatcc caaccaagaa ggagcaggtc 
003541 ttctccacct actccgacaa ccagcccggc gtgctcatcc aggtgtacga gggcgagagg 
003601 acgaggacca aggacaacaa cctgctcggc aagttcgagc tcaccggcat cccgccggcg 
003661 ccgaggggcg tgccccagat caacgtgacg ttcgacatcg acgcgaacgg catcctgaac 
003721 gtgtcggcgg aggacaagac gacggggaag aagaacaaga tcaccatcac caacgacaag 
003781 gggcggctga gcaaggagga gatcgagcgg atggtgcagg aggccgagaa gtacaaggcc 
003841 gaggacgagc aggtgcggca caaggtggag gcccgcaacg cgctggagaa ctacgcgtac 
003901 aacatgcgca acacggtgcg cgacgagaag atcgcctcca agctccccgc cgacgacaag 
003961 aagaagatcg aggacgccat cgaggatgcc atcaagtggc tcgacggcaa ccagctcgcc 
004021 gaggccgacg agttcgagga caagatgaag gagctcgaga gcctctgcaa tccgatcatc 
004081 tcaaagatgt accagggcgg cgccggtggt ccggcgggca tggacgaaga cgcccccaac 
004141 ggcagtgccg gcaccggcgg tggcagcggc gctggcccca agatcgagga agtggactaa 
004201 gcgagtggac tgagtatatg acatgttgag cgggacgaag aaggagcgat gcattctggg 
004261 acgtcatcat catctttaga gtttcatgcg gtcaagccga ataatgtcac ttgagttgtt 
004321 actggttgtg acagttatat cttgttaagg ttctatgatc cgatgtaggt tgagagagat 
004381 atatatatat atattattac tactacggag tgataggttt agcggagtaa ataagtgtga 
004441 actgtcatat gtggttcttt tagttatctc tggtgttctg ctttgaactc gggagttcag 
004501 aagtataatg ttcttttata cttcgttgca gtgtctatga ttactccgta cttttatgat 
004561 tactccgtac tttaatggtg tgtttggct

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK251839 FLbaf138g05 2312
more... (Total Hit Count: 524 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ722606 whvh17g18 766
more... (Total Hit Count: 2982 )
/rice/oryzabase