cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK243037     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0223400 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 6,505,913 -  6,510,144  ( - );   4,232(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 6,505,913 -  6,506,367 ( - );   455 (bp)
Exon 2 Location 6,506,459 -  6,506,618 ( - );   160 (bp)
Exon 3 Location 6,506,708 -  6,506,799 ( - );   92 (bp)
Exon 4 Location 6,506,994 -  6,507,068 ( - );   75 (bp)
Exon 5 Location 6,507,205 -  6,507,332 ( - );   128 (bp)
Exon 6 Location 6,507,791 -  6,507,879 ( - );   89 (bp)
Exon 7 Location 6,508,265 -  6,508,371 ( - );   107 (bp)
Exon 8 Location 6,509,299 -  6,509,347 ( - );   49 (bp)
Exon 9 Location 6,509,459 -  6,509,562 ( - );   104 (bp)
Exon 10 Location 6,509,670 -  6,509,709 ( - );   40 (bp)
Exon 11 Location 6,509,996 -  6,510,144 ( - );   149 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 MSU ID cDNA
Accession No		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os03g0223400 Os03t0223400-01 J100007H13 302398 J100007H13 LOC_Os03g12290.1 AK243037 AK243037.1 116012402 BAH01417.1 215769188 NC_008396.2 297602023 NM_001055959.2 297600565 NP_001049424.1 115451647 P14654 GLN12_ORYSJ


Chromosome: 3 ,  position: 6,505,913 - 6,510,144 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctcatccctg cttcctcttc tacacctcat tttccgcttg catcttgctc attcagatct 
000061 cttctgcttt gagcaatggc caacctcacc gacctcgtta acctcaacct cagcgactgc 
000121 agcgacaaga tcatcgccga gtacatctgg ttggcaaacc tcctctgctt ttgatctgtt 
000181 cttgatttct tatattcgtc tgcactagca agtctcctgc tgcactggtg cgttcttcaa 
000241 ggatgcaaga tcgcgttttt ttgtgcgaaa ttaatctcca tttccctacc tatgatcgtc 
000301 gtggatcgtg aaaattgatg attgttcgct tcctgaattc taccactgat caaacttttc 
000361 taccaagttt ctttgataca acaacctgaa tgatcttcct cgtctcaaaa cgtcatcttt 
000421 tttatttctg ttcagggttg gaggatcggg catagacctc aggagcaaag cgagggtgag 
000481 tgtgtttatc tcaacataca atcctggact cattatgatc actaacacta tcacaattct 
000541 gaattttctc accatttttg ttcttccgtt ttcatcgagc agactgtgaa aggccccatc 
000601 accgatgtga gccagctgcc gaagtggaac tacgacggct ccagcaccgg gcaggctccc 
000661 ggcgaggaca gcgaagtgat cctctagtat gtatatggcc ttgttctcat cgtctcttgt 
000721 gatggtttta ctttgtagat taccaaaggt tctttgtttc ttatgccttt taacattttt 
000781 cttttcttac tttgaagccc tcaagccatt ttcaaggacc cgttcaggag gggcgacaac 
000841 atccttgtaa gttcctctca cttctcttgt actttttttt tgctttgtag ctcatgacat 
000901 attgacactt tatgatggcc aaaaggaagg gaacgaaagg tcctttgcaa acaaaatttg 
000961 aatgtgtgag atggtagatt tgttgtagaa acatattatt tcaggcactg ttaagtgtta 
001021 accttgttga attgtagctt ggtctgaaaa ataaaattat gaatatgtta actagtagtt 
001081 aggttatttt ttctggctgt tggatgtgct cgaaaccttt agctgtttat cttgctctta 
001141 gccagcaaac tgcctacacc ctgatgtaga catgccaaaa ttcttacatc attgattggc 
001201 ctgctcgtac tttatggaat tcaactcttg tgtatagata taaattagcc tgttagaaac 
001261 attggccacg aatagcttcc gtactccttc cgtatcaaaa taaaacaatt tctggaattt 
001321 gaaatttatt ccaaaataaa caccttctat cttcttaact atcgtcaatc cgcaaagcaa 
001381 gaagttttat tacctcaata cccccgacct accagtaaat caatacaact ttcacattaa 
001441 ttgagggcat tgtggtttct gtttctctcc ttaaaatttt ctttggatgt tagggtttaa 
001501 gttagggaga aagggggtag atgtacttca ttcagcttaa agcagtaact gcatagccct 
001561 taattttcaa ctatgcctaa gtttatttcc aaactttttt tttaaacttt caacttttcc 
001621 atcacatcaa aactttccta cacacacaaa ctttcaactt ttccgtcaca tcgttccaat 
001681 ttcaatcaaa cttttaattt tggcgtgaac taaacatacc ctatatcggg aagtcgctgg 
001741 tttgcttact tttttaattt aatgttacta taggtgatgt gcgactgcta cacgccacaa 
001801 ggtgagccaa tccccactaa caagaggcac agtgccgcca agatcttcag ccaccctgat 
001861 gttgttgctg aggtgccatg gtaagaaccg ttctctccag attattaaag tatttttgca 
001921 tacgacttaa ttaaaatttt aactccgttg ttaaaaaaaa tccttgtttc caataaatat 
001981 aagcatgtca gaactttcaa gttctgaaac gattgttata ttcaccaagt gatttaaatt 
002041 actacttggt gagtagtaat ctagatcatt tttgttgaca caaatataat agtttagttt 
002101 agtttatcaa atagctaaat atgaaaacta aaagttttca aggccgttca aaataaaaaa 
002161 aagtttttaa ggaccaccaa atgtggagac ccccaaatct atatctactt tactatctta 
002221 tctgctatac cattctcata aggttttatc tctgaatcca aacaggtacg gtattgagca 
002281 ggagtacaca ctccttcaaa aggatgtgaa ctggcccctt ggctggccag ttggtggctt 
002341 ccctggccca caggcaagaa atcactgctc aaaatattca tagttactcc atagaattta 
002401 gggcattaga atcttcatta aaatagactt tgtttggtag tattgttgtg aatttttcaa 
002461 caaaaatgtt cttgctttac ccaatagaaa caatgtttga aagagtttga aagaggagta 
002521 acatcctact attgcaaatt atataaaacc aagctatgtg atgtacgtga atgtgatgtc 
002581 agaatttgaa aaatcaaagc cacacttgca gtttttatta atctatggta gttgacttgc 
002641 tgaaaattta caaatcctta aattgccact tgagccttat agggacttaa ctgaaaaaag 
002701 accagctcta gtgtcatgaa tagcaattag atatgcttgt gtcggtaata ttttcccata 
002761 aaatcctctg taattttctg aactttgttc tgaatttttt ttctctctca gggaccatac 
002821 tactgcgctg ccggtgccga aaaggcgttc ggccgcgaca tcgtggacgc ccactacaag 
002881 gcctgcatct acgccgggat caacatcagt ggcatcaacg gggaagtcat gcccggccag 
002941 gtacttccaa cgaaatctcc atattgttct cttcatctta tcaccaccgg gctccatgta 
003001 ccatagtatg gcacatgaac acgacggctg atacgtgtgc taattctgat tctgaatcgg 
003061 attctgtggg tgacagtggg agttccaagt tggcccgtca gttggcatcg ccgctgctga 
003121 ccaagtgtgg gttgcccgct acatcctcga ggtacgtaca aatcatatcc tgatatgata 
003181 tattatatta ttctcggcta gcttggatta atcggaataa gcatcgcgac aagtacaccg 
003241 ctcaactgcg agcagtatat gttccagttc tgcaatgtta ctacatctta attaattagt 
003301 acgttgaggt ttagctgaac ttttgtcgtg gttgattggt tccagagggt cacagaggtg 
003361 gccggagtcg tgctctccct tgacccgaag ccgatcccgg gtgactggaa tggcgctggt 
003421 gcccacacca acttcaggta gcagcagtaa caattttcta gctctctgat gctgtgagtg 
003481 agctgcaaca caggtggttt atgtgtgcat tttgtgcatt ttgcagcacc aagtcgatga 
003541 gggagccggg aggctacgag gtgatcaaga aggcgatcga caagctcgcg ctgaggcaca 
003601 aggagcacat cgccgcctac ggcgagggca acgagcgccg cctcaccggc cgccacgaga 
003661 ccgccgacat caacaccttc aaatgggtac gtgtatacac gcatacgccc gccgttcgtc 
003721 gatcgatcgg ctagcctacc atgagatcat aacctttttt tgcgtgcgtg cgtgcagggc 
003781 gtggcgaacc gcggcgcgtc catccgcgtg gggcgcgaca cggagaagga gggcaagggg 
003841 tacttcgagg acaggaggcc ggcgtccaac atggacccat acgtcgtcac cggcatgatc 
003901 gccgagacca cgctgctgtg gaagcagaac taagccgtcc ggcgggcctc tcccgtgcat 
003961 ttctgcgccc aaaaaaaaca aaaaaaagaa acgtacgcgt gcgtgcatca gccgtgatgt 
004021 gtcaacgttg gatttcggtc tcggtctatc cttggcgtcg acaaggccct ttgaatttta 
004081 ttactagtct gtcctgttca ccgagtgtca ttttgtgtac tctgaataat aatgctttgt 
004141 aaaacggatt tgctttttcc gtagggacgg atgttcttga ttttcctata tcgtgattta 
004201 tatatatgga aaaccgctgt ctttttttgt tc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV933037 baal5b22 641
more... (Total Hit Count: 65 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ717533 whvd16f11 820
more... (Total Hit Count: 359 )
/rice/oryzabase