cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK068018     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0691700 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 30,285,640 -  30,290,184  ( + ) ;   4,545(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 30,285,640 -  30,285,952 ( + ) ;   313 (bp)
Exon 2 Location 30,286,191 -  30,286,337 ( + ) ;   147 (bp)
Exon 3 Location 30,286,450 -  30,286,517 ( + ) ;   68 (bp)
Exon 4 Location 30,287,194 -  30,287,251 ( + ) ;   58 (bp)
Exon 5 Location 30,287,897 -  30,288,007 ( + ) ;   111 (bp)
Exon 6 Location 30,288,091 -  30,288,141 ( + ) ;   51 (bp)
Exon 7 Location 30,288,731 -  30,288,874 ( + ) ;   144 (bp)
Exon 8 Location 30,288,993 -  30,289,088 ( + ) ;   96 (bp)
Exon 9 Location 30,289,204 -  30,289,275 ( + ) ;   72 (bp)
Exon 10 Location 30,289,815 -  30,290,184 ( + ) ;   370 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0691700 Os01t0691700-01 J013134M14 203602 J013134M14 3294 LOC_Os01g49690.1 AK068018 4199 AP008207.2 255672756 BAF05851.1 113533468 NC_008394.4 297598437 NM_001050472.1 115439314 NP_001043937.1 115439315


Chromosome: 1 ,  position: 30,285,640 - 30,290,184 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tttcctcctc tctcttcccc tccctccctt ccctcttcgt ccctcctccc ctcccccccg 
000061 ccgcgatcga gacggcggcg aaaccaacac cggaatccga ggggggatcc gccgcggctt 
000121 cgctacccta gcccccgccc cttctcgaat ccgcgcccta aaatcccctt tgcctcccca 
000181 ccccaccccc gggcgcgccg ccatcccccc ccgcccccgc gagcccctcc cgatggattt 
000241 ggatctgtgg atctctaagg tgaaggaggg ccagcacctc gccgagcacg agctccagtc 
000301 cctctgcgaa tacgtgagct ttcctccccc ccgccctgtc ccccgattgg ttcggttatt 
000361 agggtttttg ccatgccccg tgctctcgcg cggcggcggc ggcggcggcg cgcgtgcggt 
000421 tgctagggtt cgttggtagg gggtggacgt ggggggaaac cgttgccttt tgctttccgt 
000481 actgaacttg agttttgtta tgtatatggg gtcgcgtgta accgcggctg attttccgct 
000541 gatccttcca ggtgaaggag atcctcatcg aggagtccaa cgtgcagcca gtgaacagcc 
000601 cggtgaccgt gtgcggagac atccatgggc agttccatga cctgatgaag ctcttcgcga 
000661 ctggggggca tgtgcccgag acgaattata ttttcatggt gtggcttctg gagcattttg 
000721 tgtttatgtg tttctgtgtg tgtgagcttg ttggttgaga tggttctgga tgatgctgtg 
000781 ttcctgaatt cagctgtgct tcacgtgcag ggtgattttg tagaccgcgg cttcaacagt 
000841 ctggaggtct tcaccattct gttgctacta aaagcgaggt atttgcctac ctttttgttt 
000901 gggatcgtga atgttctgtt tgtttgttcg aaagctttga cctttctggc acatagctgc 
000961 agctgcttca ctgttccgtt tggtattaca gtacttcgat gttatattac ctttttctac 
001021 agggacatta catgaaaaaa tatgtgaatg gttgcagcag tagtttacct tccttagatg 
001081 tgaatcatgt tgttgtatgg tcctgcctgt cgtttgatta tatgccaaat cctgttgtct 
001141 tttcattact gccttctccc cttattttgc ctggataacc ttgagcaatg tatggggtca 
001201 atgtgttgtt ctatacttct atataataca aatagctccc aggagttgaa ctgaaatgct 
001261 gaatagttgt aggatgagac acactgtgat ctaattgtgg ctcgtgcaat tgagcctagt 
001321 tggctgaatt ttgaaattgg tattcctgtt gttgtttcac aacttggact gctaatttga 
001381 gtagaatggt tgcactgtta agtagtgaac aattcctgta agactcccta gtccttgcta 
001441 gtttcatttg ttcttggttg cactcatttt ctcaaggatt ctgatttata gtttgtaccc 
001501 aagtgttact atctgtggct cattcttgct attgggtttc ctgattgtga ttaggtaccc 
001561 tgcacacata acgcttctgc gtggaaatca tgaaagcaga cagttgacac aggtatttcc 
001621 tggtgcggac aatgttttca tttattatcc aatttatttc ttttcttgag atttgagata 
001681 cttatgttgc acttttaagt gttgtatctc aactgctctg atgatttata tgttgtatct 
001741 caactgttgc atccaagagg tcctgtttta gttgtttgtt ggcctgtaca tgcatgtatg 
001801 ctcatatcaa acatttgtag gttttgtatt aattatctat gagggtatca tgcgttggac 
001861 ataaatatgc atagctccat tacatacaat tctgattctg gagatgtatt aactcgtatt 
001921 gcttttctgc ctgagcaatg tcaaataatc cggtcattat atctatgatt ttcccttggt 
001981 ttcatgttcg tttcagtgta tgcacattgg aatgaaatac acgcacatgt tgcatactag 
002041 tgtatcttta gttcctaatc agcaccatat gatgagcaac ctgtgttgtc atccttagat 
002101 tttgtttaat gagttggaat atgtttttta catggttcct tacgtttcct ttatttgtac 
002161 agttcatcct cctgacagac tttgtgctca tatatctgca ctacacatgt atttggtgct 
002221 tatgatgcag taacacatag tatttttcta attttaggtg tatggtttct acgatgagtg 
002281 ccaaaggaag tatgggaatg cgaatgcatg gcggtattgc accgatgttt ttgactacct 
002341 tactctttca gcaatcatta atggcacggt aagtttgttt ggacattttg taagttgtcg 
002401 gtttataatt tttgtgccaa ataatcatca aaccatatgc taaaaatcca ggttctttgt 
002461 gttcatggtg gactttctcc tgatgtgcgc actgttgatc aggtttgctg aacttttttt 
002521 cttgaagttt cataagcatc attaagtcta agtgttgttt atcaaactct aattaattgt 
002581 aatactaaca ttattatttt gagttactgt actacacctt gtcgatgcaa caattagtag 
002641 gtctggcact aagttcaaaa gaattagata attctgcctt ttaagtatga atatcctcag 
002701 ttgatcaggt gatatccgtt gaaccttttg aaggggtaaa caactgggtg ttgccatttt 
002761 agataatttg ttgaaatagt gtatgctatt ttcagtgaca catatatctc tgacccatcc 
002821 tttaaagaaa aaataaatgg ttgttcgcta acttagttgt ggtatacttt tctttgtcgt 
002881 taaaatatat actttatatc tgactgtgta ctattagaaa ttagttggtt catagctttg 
002941 catgttcaca attttttagt aagacatgat tctgtgattt gttttatctt aagatatatt 
003001 gttgtcagat aagaattaaa aaccgtctca acgcaatatt acaatgaaat taatcatgtg 
003061 attgaatatc cttgttaatt ctattgacca gattcggacg attgatcgca attgtgaaat 
003121 tcctcatgaa ggtcctttct gtgatctaat gtggagtgac cctgaagaaa tagagacatg 
003181 ggctgttagc cctcgtggag ctggttggct ttttggatca cgagtgacag ctgaggtatg 
003241 tacagtcatt tgatgatttc ttactctatt tttcagagag tgtgtacagt cactacattc 
003301 tggatcatct attaattgtt tccttgtaaa tgtttttcat ctaccttttg cagttcaacc 
003361 atattaacaa tctcgatcta gtttgccgag ctcaccagct ggttcaggaa ggcttaaagt 
003421 acatgtttca ggacaaaggc cttgtaactg taagtttctg ttcacatgtc agtccagata 
003481 atcatagcat tgtactaagc ttgtatttct tttttcaata ctgttatatt gatgctcaca 
003541 taccctgcaa tacctttttt ccaggtgtgg tccgctccta attattgcta cagatgtgga 
003601 aatgttgctt ctatactaag cttcagtgag acaatggtat gttgtgcacc tgtggtggaa 
003661 gcattatgta attgcatcaa acttcatata ggagtactag gatttgctag tgcacttgtg 
003721 cacacacaat acagagatga aacagcgcta ggcacccaac tgcttttgtg tgctcaacaa 
003781 taacaaatgc caccccatgc tatctataat ctactcagca atgaattaac gatacacagc 
003841 actttggttt gactactgat tgggggaaac ttaagttgga ctcaagagca actagcatat 
003901 tcgtttctag ttgtgtaact gtggccacct caataaacca ttcctcaggg aatagaagtt 
003961 ccaattgaac ttagctcatc tacaagtact ggaagatttc ttgctactag tgtgaaattg 
004021 ttatcttatc tgtggtctga ctcttgcatt agttgatctg aatatgttaa catgtcttct 
004081 tttgcaaata ctgctgtgaa gtatctgatt tgtttcatga gctctaaggc tcgcagctga 
004141 ttctgatctt ttatatcctt tgtctaaaac atcaggaaag agaggtcaaa ttcttcacag 
004201 agacagagga gaataaccag atgcgaggac cgaggactgc tgtcccatat ttcctctgac 
004261 ttcatcaatt gtacaatttt agaagtcatg tttttatctg taagggttaa agatgaagca 
004321 gacctattta ttgttgtagg tccaggtcat agtgcaatct aatgcgtatg atttttctgt 
004381 tcttttaacc acatgtacaa tagaccattt ggagtgtcat cactcctgta ttccttctgt 
004441 ggcgttgtca agttttgttt ctgatttatt tcgggtcgac acagtttgcc acacaggagg 
004501 tttgggccgt tattgtgtta tatttgcagc tacagcttcc cactc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK250359 FLbaf79b02 1384
more... (Total Hit Count: 14 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ719324 whvd3h19 754
more... (Total Hit Count: 60 )
/rice/oryzabase