cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK121620     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os03g0793500 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 3
RAP - Location, Length 33,898,013 -  33,905,409  ( + ) ;   7,397(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 33,898,013 -  33,898,199 ( + ) ;   187 (bp)
Exon 2 Location 33,898,893 -  33,899,359 ( + ) ;   467 (bp)
Exon 3 Location 33,900,021 -  33,900,146 ( + ) ;   126 (bp)
Exon 4 Location 33,900,230 -  33,900,303 ( + ) ;   74 (bp)
Exon 5 Location 33,900,393 -  33,900,462 ( + ) ;   70 (bp)
Exon 6 Location 33,900,547 -  33,900,602 ( + ) ;   56 (bp)
Exon 7 Location 33,900,687 -  33,900,758 ( + ) ;   72 (bp)
Exon 8 Location 33,900,870 -  33,900,964 ( + ) ;   95 (bp)
Exon 9 Location 33,901,121 -  33,901,187 ( + ) ;   67 (bp)
Exon 10 Location 33,901,284 -  33,901,413 ( + ) ;   130 (bp)
Exon 11 Location 33,901,503 -  33,901,718 ( + ) ;   216 (bp)
Exon 12 Location 33,901,812 -  33,901,942 ( + ) ;   131 (bp)
Exon 13 Location 33,902,644 -  33,902,818 ( + ) ;   175 (bp)
Exon 14 Location 33,902,902 -  33,902,992 ( + ) ;   91 (bp)
Exon 15 Location 33,904,076 -  33,904,233 ( + ) ;   158 (bp)
Exon 16 Location 33,904,688 -  33,904,876 ( + ) ;   189 (bp)
Exon 17 Location 33,904,991 -  33,905,409 ( + ) ;   419 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os03g0793500 Os03t0793500-01 216339 J033044P16 15304 LOC_Os03g57940.1 AK121620 10932 AP008209.2 255674134 BAF13445.1 113550002 NC_008396.2 297602023 NM_001058066.1 115455860 NP_001051531.1 115455861
Os03g0793500 Os03t0793500-01 216339 J033044P16 15304 LOC_Os03g57940.2 AK121620 10932 AP008209.2 255674134 BAF13445.1 113550002 NC_008396.2 297602023 NM_001058066.1 115455860 NP_001051531.1 115455861
Os03g0793500 Os03t0793500-01 216339 J033044P16 15304 LOC_Os03g57940.3 AK121620 10932 AP008209.2 255674134 BAF13445.1 113550002 NC_008396.2 297602023 NM_001058066.1 115455860 NP_001051531.1 115455861
Os03g0793500 Os03t0793500-01 216339 J033044P16 15304 LOC_Os03g57940.4 AK121620 10932 AP008209.2 255674134 BAF13445.1 113550002 NC_008396.2 297602023 NM_001058066.1 115455860 NP_001051531.1 115455861


Chromosome: 3 ,  position: 33,898,013 - 33,905,409 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gcagcagccg cagcagcagc aaagcctccc cccccaaccc accaccgcga cacgcacgcg 
000061 agcgacgcga gcgctccacg atttctctgc ctcccccccc ccctcggtct cctcctcccc 
000121 caccaccacc gcacgcttcc cgaggcgccg ccctccgccg ccgcgggcat ccgcttccga 
000181 cgacgatgta agccgctctt ctccgcgctc tcgctctgtg tttttttttt ttttgggggg 
000241 gggggttgat cggtgggggc ggttgcttga ggcgcgatcg gattgcgggg cggggtcgct 
000301 gacgctgggg ggggagtgat ccgatggggt tgaggagggc cgattcgggc gctggaaatg 
000361 ggttcggttt cgaggataga tgcttgcctc atggggagct ttattgcgga tttaggaaaa 
000421 aaagcgtggt ttgcgtggga ttgggggatt tgtggcgggt tgggattagt ttaggattgg 
000481 tttggtgttg gattggtggt aatctggagg taaaaggtgg gagttttttt tttcctttct 
000541 gggtggagat cccctgcggg gtatcgggtg atggagatgc tcgggcttct tttagagcgc 
000601 cgatggcggc attcgattcc gttgaaaggg cagtggtggt agcaaagcgg gctgcgtctt 
000661 taaggggggg gggggggggg ctcgcgatgg cgatgaatgc ctcagattga ttccactccg 
000721 atcttttcct attcccgatt cattgcttga ttgatttgcc atgacatggt gaaggaacaa 
000781 tctttgagct gaaatttgtt tatgtttgtg attgttgtgc ctgctgtggt ttccttcatc 
000841 agtgatttat tcttgttgga tgtttttttt tcatgcggag attggaagga gcaccgaagg 
000901 gtgtagcaca aggccgagtt gcatggggcg ataatgccag agttgcgggg tggtgtttgg 
000961 agagctcgtc tgaggtccaa gaaggtttac gacgtccagg acgcagatcc agctgcgagt 
001021 ccggtgtcgc cagctccgcg ggggaggact ggaaggcgcg gcggtgctgc ggctggcaga 
001081 ggcaacaaga cagttgctga gggaggaggg aggaaagctc tgaagcctag aggaaagggg 
001141 tgcagggctg ttgatttgtg taaggatcaa ccttgcaagg acctccctga agttattgct 
001201 agaaaggcgg ttaccggcaa agcccaggag gaccttggtt tgaacaaggt agctgacaga 
001261 gctgcgaact tgatgatgga cggcgaaagt ggagacaaat ttgctgcggc agaagatgaa 
001321 tccactacaa caccagttcc tgagcgggta tggaatacct tcttcccttt gcacttctgt 
001381 aggtgtacta tcatttgtac cgataaagtc attttcttca agttctttaa catgggatgt 
001441 ttcatcattt ttgtttactt tgtttggtag tttttgtatg gttgctgttc cagatgttca 
001501 tgttaccttt cacagatgac ttctctgctg tattggtgtt attagacaca agacaaccga 
001561 catgtctgtt tcacataaaa tatagtgtaa ccaaatttag aagttataaa gtataataat 
001621 tgatgatgat tcatctgaat tgtggcgtaa gaaatggttt agttgttatg cttgagaggt 
001681 gagtgcctat ttgcttggcg aagctgagat tgaggcactg aatggctgga ttatagtagt 
001741 tttgttttgt agaggaaaca aacttcagat aatcacatag tatcacatcc tgatatcaca 
001801 aaaccgatga aactccgtgg caagttcatc aaacaacaaa gtttaggaat gggaaagtta 
001861 caatctcttg ctctttgaca tcaaatttta tcactaaaat aggagtttgc ttctcctggt 
001921 gacatctttt atctacactt tatgtggcag agtttcactg ccattaatta acctcctaaa 
001981 attctaaata gttatatatg ttttacaggt tcaagtaggc aattccccag agtatataac 
002041 tgataggaag ttgggtaaag gtggatttgg tcaggtctat gttggtcgaa gagtatctgg 
002101 tggaggttct cgcacgggtc cagatgcgca agaggtttca tttcttacca cctcaattgg 
002161 acactgaagc tctgttagtt tagttagttt ttagatatct gaatgaatat cctgtaggtt 
002221 gcgcttaaat ttgagcaccg aagcagtaaa ggatgtaact atggccctcc atacgagtgg 
002281 caggtttacc agtaagaatt tcacacaatc tatcccttct gatgtttatg ttgttctatg 
002341 tggagtatga tccattaacc ttttgtcctt ttgtaaatag cactctcaat ggttgttatg 
002401 gcataccatc agtccactat aagggtcgtt tgggagacta ctacattctt gtgcgtttac 
002461 cttagtcatg tattgaaaaa tgtttctgga ctcaaaataa attattttat tcaaccatca 
002521 caccaaaatt tcaggtaatg gatatgcttg gtcccagcct ctgggatgtg tggaattcag 
002581 tgggacaggc gtaagtttcg gatcaccttt ttgcattgac cacctgattt tattactcct 
002641 cactgaaaat aacagcattg gaacttgcaa acaggatgtc tgcccatatg gttgcttgca 
002701 ttgctgtgga agcgatatca attcttgaga agcttcactc taaagggtaa aatttaaagt 
002761 cacttgtgcc tgaaaattat atggagctgc atggaatttc tcttttgttt tctatttcat 
002821 tggtgttaac atttccagtg catcttatca ttgccaggtt tgtacatggt gatgtcaaac 
002881 cagagaattt tttgcttggt catcctgggt cagttgatga gaagaagctt ttcctgattg 
002941 atcttggttt aggtaggctt ttgttcaaag tagtctcatc tgtgtatgaa gtattcaatt 
003001 tagttctcaa tgtgctatgg catttgctct tatgcatttt gtacttgaat cccaaggaat 
003061 tgttgccctg ttgatttatt tttatttcgt gatgttgaaa tcatgcagca tccaggtgga 
003121 aagaagcatc atctggtcag catgttgact atgatcagag gccagatgtc tttaggttcg 
003181 tccatttttg tgtgtgcact ataatatctt tttctctgta ttaaattatg ggcaattatt 
003241 aacttacctt tttcttttcg acattttaca ggggaacaat tagatacgct agcgtccatg 
003301 cccacttagg tcgtacaggt agcaggaggg atgatttaga gtcactggct tacaccctaa 
003361 tctttttaat aagagggaga ttaccttggc aagggtatca ggtagccttt aatatgctca 
003421 gcaaagtttt gacataatgt tttcttctat ttgttgaact tattttagtg ttaatgggat 
003481 ggtaatgcag ggagataaca agagttttct tgtttgtaag aagaaaatgg ctacttcacc 
003541 agagttgctg tgttgcttct gtccagctcc gttcaaacat tttctagaga tggtcactaa 
003601 catgaaattt gacgaagagc caaactatcc aaaacttatt tctctctttg atggtttgat 
003661 tgaagggcct gcttcaaggc ccatcagaat tgatggagct ctgaaggtat gtaaatgttg 
003721 tacacacaac ctgtgtctgt accatacaga ttaacttgaa tgcgttaaat tttctcatgt 
003781 atatttttgc atattatagg ttgggcaaaa acgtggaaga atggttgtaa atcttgacga 
003841 tgatgaacag cccaagaaga aagttaggtt gggaagccca gcaactcaat ggatctcagt 
003901 ttataatgct aggcggccca tgaagcagag gtaatgccct aaaaactgaa aatggtgcaa 
003961 agtctctgtg tctgttattt attttcccaa acattgtcct cgcaatgcac ttgcctttaa 
004021 gtgtggacgc acttgccttt aagtgtggac tgagcacata acacgatgct atccagttgc 
004081 caccagacac tttacaactg gtctgttctg tttccctgat gtcaggatct cataaggctt 
004141 cttatcacta tgatattacg caaactgctt ttgagttatc tccgatacat tttattgttc 
004201 taactacatt ttatatgtct ccaaatttgc tgggttaagc aagagttcag tgactaactc 
004261 tgtcttgatt gatgttgtca ctggggatag ttcctgtatg cgcctagtgt catccatttt 
004321 agcatggact taactttacc tgattcctgg caaaagcagc gatgtgaaaa tatcatccat 
004381 ggcgttagct gaacccttca tgctagtttt agtgatggaa gtgtttgtgt gtgtgtgcgt 
004441 gcccctgcat gcccatgctt attacaattt cagccttcat agctcttatt tctttggcct 
004501 ccttgttcta gaatttgagt ttttgaagtc aacctagttc tcagctatta atccatatat 
004561 ttatcctctt taaaaattaa atatgatata tattgacgtg gctgcaaaat gcatcacttc 
004621 tttctttaca gatatcacta taatgttgct gattcaaggc tgcatcagca tatagaaaaa 
004681 ggcaatgaag atgggctgta cattagttgt gtctcttctt ccgcaaattt ttgggctctc 
004741 ataatggatg ctgggactgg cttttgttcc caagtttatg agctttcaca agtgtttctg 
004801 cacaaggtgc actggctatt tctccacccc ttccatccag ttttgatgaa tccagagtcc 
004861 tgactccata ttaccttgtt tgtacatagg attggattat ggagcagtgg gagaagaatt 
004921 attacataac ggcaatagca ggagcaacca atggaagctc attggttgta atgtccaaag 
004981 gttggtaaaa taccttttct ctgctggcaa actaatttta ctaccttggc tatttcttag 
005041 aacttgaaac aaccccgttg atgaatatga aatagttgaa acagtcagtt gctttaagac 
005101 agttttcagc agaacctctt gtgcagcaag ggtatgtgcc ttgcatacta gactgattga 
005161 aacatgagtg tgttgaaggc ataacctgca acaacttcat aggttaaaat gatttgtgta 
005221 gactgtagag tgtgatcctt tttatttggg gggacagcca ccagtattgc ctgctcaatt 
005281 gctcggcaag tagcaataat tttcgtttca ttgtgtaaag gacgaacaat cagatggttc 
005341 ctgttaaaac tgtgatggtt aacagtaggt ttgtaagtag gcatttcgtc catgctctca 
005401 tcagtccatg gcagcttgag gcagaattta tttagagggt gccacaagtt cataacatga 
005461 atggcagaca gacatacata atctgtctct ataatacaca aatatctatg aactaatatt 
005521 tggtttggcc agttttgatc aaaaagttga tggatcaatt ttgttaccag ttttcctttg 
005581 cttcaacact taaatttaag agtaaatttc acaaaactac agatatattg accaaactat 
005641 cacaaaactg cagatttaac accaaattta tcacaaaact acaggtctaa ggtggagtct 
005701 cacaaaactt tagatttagt aacaaagttt tcacaaaact acaggtttag cgtcaattta 
005761 atcacaaaac ttggacgttt tatgactcaa acataacatt agtgctaagg atttaaaccc 
005821 caaaaattgt agttttgtga taattttata aatgtgtagt tttgtggtac ttagccttag 
005881 acctgtaacc ttaaatctgt agttttgcat taatttggtc aaagtatctg tacttttgtg 
005941 aaatttactc tttaattttg tatttctact ctcaactgtc tggactccaa tttttcctgt 
006001 gagcttctgg tgtccttcca ttagatacta tcgttctaaa ccaggcatgt atcatcatta 
006061 caggaactcc atacacacag cagtcataca aagtcagtga atcctttcct tacaagtgga 
006121 ttaacaaaaa gtggaaagaa ggtttccatg tgacatctat ggctactgct ggaaaccgtt 
006181 ggggagttgt catgtcaaga aatgcaggct attcccatca ggttaaaaga tttcgattta 
006241 ccaatccttg tgttcattct ttctatgaat ttggtggctt ctcatatgcc aaataacctg 
006301 tacgtgataa aaaatggtat atacaccttg attggtaaag aatatccaac gataagttac 
006361 tgtcgatagg ctaacctcaa aaccatcagt ttaagtgttg cgtgcggaaa ctacctaact 
006421 ccaaactttt gttgctgtaa ggatgtcatc ttgtttgtgg ttgaattcga acattcaact 
006481 ggtagaatgc ttgatgtacc aatcagttga gtttgtgctc tttacagctg ttaaccaaaa 
006541 aagcagggaa atacagtaac cacacatgtt tctattctga attttcttac atattatctt 
006601 gatgttcaga ctcctgagtt gatcactgct tcatagtgag taagtctgaa actgaatccg 
006661 tctcgcaatg tgcaggtggt agagttggac tttctatatc caagtgaagg gatccatcgg 
006721 cgatgggaga caggttacag aataacttcg actgcagcaa ctcctgacca agctgccttc 
006781 atcttgagca taccaaagag gaagccaatg gacgagacac aagaaactct tcgaacttcc 
006841 tcctttccca gcaaccatgt caaggtacat acatcttcag ctctcccaac ctcacaatgc 
006901 catacaaaat cttatgatgc gtcgaacttt ttttgacgga aatgatgcgt cgaactaaca 
006961 ttgctgttaa aatctcagga aaaatggtca aagaacctat acatcgcttc aatctgctac 
007021 ggccggaccg tatgctgaca gcttcaacat ttcgaagctc caatgtgaag ccatgtctag 
007081 ctactactag cattttgcag tgagctgcca accgatcaaa tctcccttga ttgggagatc 
007141 tgaagcaagg aaaaaaaaaa gaaacaaatc aatggctgac atcaccggcc tcttgcagcc 
007201 atctattcta actgtaaaaa ttgaaaaaaa aaatcatggc aaatgttgta ccagatcgga 
007261 tatggagacc tttgtccata agctaagcta gtataagctg catggcggtg ctaagatcat 
007321 attgttctca catacggagt atatatatat catactactc tctctgtttc agattataag 
007381 atattttgac tttggcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ462554 bags29c01 580
more... (Total Hit Count: 4 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ659791 whhg20f08 774
more... (Total Hit Count: 72 )
/rice/oryzabase