cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121478     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0109600 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 559,380 -  561,685  ( - );   2,306(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 559,380 -  559,798 ( - );   419 (bp)
Exon 2 Location 559,961 -  559,999 ( - );   39 (bp)
Exon 3 Location 560,234 -  560,290 ( - );   57 (bp)
Exon 4 Location 560,382 -  560,530 ( - );   149 (bp)
Exon 5 Location 560,953 -  561,020 ( - );   68 (bp)
Exon 6 Location 561,548 -  561,685 ( - );   138 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0109600 Os03t0109600-01 216197 J023149H07 5078 LOC_Os03g01910.1 AK121478 27036 AP008209.2 255674134 BAF10623.1 113547180 NC_008396.2 297602023 NM_001055244.1 115450216 NP_001048709.1 115450217
Os03g0109600 Os03t0109600-01 216197 J023149H07 5078 LOC_Os03g01910.2 AK121478 27036 AP008209.2 255674134 BAF10623.1 113547180 NC_008396.2 297602023 NM_001055244.1 115450216 NP_001048709.1 115450217


Chromosome: 3 ,  position: 559,380 - 561,685 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 aagtcgcagt ggttggcctc gcgagcccta tctcctcctt cctaatcccc tttcccctcc 
000061 ccctctccat tcccctcgcc gccgccgccg ccaccgccgc cgccgcggcg cgccgccctc 
000121 ctcctcctcc catccaaggt gagacggcga catctccggc gtctccttct cccctgcagc 
000181 acttacttgt gatagatagt aggcgctatg cttttactcg cactgcatca gtactggttc 
000241 ccgcttgcag cagcttttgt ttggattgag ggtttttatc ccctcttttt tattatcaat 
000301 tgattacgta gtggttcaat agatagtggg cagggatagt gtttgtgatt tccccctttt 
000361 tttttctgaa ctttctgatt gcacgattgg ggttttagca cgcgcggtta ggttccatgg 
000421 ctagatttgc tccgtatgaa agcagcgagg gtgtttgcga ggtttgattc aagtgttcta 
000481 ttactgggtc gtgttgttta gatggattga gggtgttagt ttaggagaag ttgtcctcta 
000541 gatttgcgaa atcgtagtag agctgctcct ctgatgctgt ttgacttgag tgtctaagag 
000601 taatctgacc tttccttttt ccgttatggc tttactaaag caaagtacca tatgttttca 
000661 tgcagatgaa tgtcgacaag cttaagaaga tggcgggtgc cgtgcgcacc ggtggcaagg 
000721 gcagcatgcg caggtatttt tcttgtttat tctgatcgtc cacaagtaat gccattggta 
000781 ttgcagtagc aatgattgat ttatgccact gaatattttt tttgccgaac tttctattat 
000841 cactgaggga attgcttgtt ttagatctaa atagttttcc gtataaagac atgttaaact 
000901 tcttgatcat catgcattta tgatgcatcc tttcccaata gtttctttcc ctcctctatt 
000961 ttacttgcta ctgtatatgt gaagctctgg acgtgtctga gatgtatctt tattgcgctc 
001021 ttcatatgcg ctcgtagata actaactatc tagataagat atactgggct tgtattttgg 
001081 gatccgatct tttaaacaat gtattgtgct gtggcctttg gattcatatt aatacttgtt 
001141 gtgcatttat ggcaggaaga agaaggcagt tcacaagact accaccactg atgacaagag 
001201 gcttcaaagc accttgaaaa gagtaggagt gaacaacatt cctggtatcg aagaggtcaa 
001261 tatcttcaag gatgatgtgg ttatccaatt tcagaatcca aaaggtgaaa ttctaccatg 
001321 ctgaagcttc tatagaattg ataactcgct ccctgttttc ttctgaaatt gtcttctatt 
001381 cttgccttcc tgcagtgcaa gcatccattg gtgcaaatac atgggtagtg agtggaacac 
001441 cacagacgaa gagtaagtca ttgcttaaga tcttgcgtac tgattgttgt gtagcctcat 
001501 gtttagtggt taacatgaat gaataggttg aaatatcttc tcttgtttgt gttgaattac 
001561 atccggcaaa aaatcttgag atgaacaaac cctttaaacg caaatttgca tctgcgtcgt 
001621 tgaccctatg ttattcttca atcctgcata atggtgttct catctttggc tttctaattt 
001681 tgacagagct gcaagatctg cttccaacaa tcatcaacca gttgggtatg agactttttt 
001741 cttggtttta ctgaatatga gttcaatatt gcacacctcg ccctaatcct gaaatatctg 
001801 aaccaagcat tagtctttaa gtacgtccta ctcacatagt agtatataca tactcttgtt 
001861 tgatcaccct taattaccta tctgcaggac ctgataacct ggacaacctc aggaggcttg 
001921 ctgagcagtt ccagaagcag gtacccggtg ctgaggctgg tgccagcgca ggtaacgctc 
001981 aggacgacga cgatgatgtc cctgagcttg tccctggaga gacgttcgag gaggctgcag 
002041 aggagaagga gcctgaggag aagaaggaag cggaggtgga agagaagaaa gagtcgtcct 
002101 agttttgttc atcgccgtcg tctattattg ttgtgaaggg ttgttggttc aatgttaccc 
002161 cctaccatgc ctgggacgtg ctctcctatg gactccgacc tgccttactc gtttccatgt 
002221 gggccggttt tgtcttgtac gaggatttgg tccaatccaa cggtggaatt gagttttacg 
002281 acagttaaat tatgcttcca attcgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV926552 basd19m24 593
more... (Total Hit Count: 34 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ207251 wh2o17 626
more... (Total Hit Count: 282 )
/rice/oryzabase