cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK121254     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0167600 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 3,652,707 -  3,656,067  ( + ) ;   3,361(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3,652,707 -  3,653,390 ( + ) ;   684 (bp)
Exon 2 Location 3,653,484 -  3,653,587 ( + ) ;   104 (bp)
Exon 3 Location 3,653,698 -  3,653,897 ( + ) ;   200 (bp)
Exon 4 Location 3,654,015 -  3,654,115 ( + ) ;   101 (bp)
Exon 5 Location 3,654,234 -  3,654,447 ( + ) ;   214 (bp)
Exon 6 Location 3,654,561 -  3,654,722 ( + ) ;   162 (bp)
Exon 7 Location 3,654,835 -  3,654,916 ( + ) ;   82 (bp)
Exon 8 Location 3,654,996 -  3,655,423 ( + ) ;   428 (bp)
Exon 9 Location 3,655,706 -  3,656,067 ( + ) ;   362 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0167600 Os03t0167600-01 J023102A19 215973 J023102A19 21054 LOC_Os03g07140.1 AK121254 42681 AP008209.2 255674134 BAF10997.1 113547554 NC_008396.2 297602023 NM_001055618.1 115450964 NP_001049083.1 115450965


Chromosome: 3 ,  position: 3,652,707 - 3,656,067 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gatggcctcc tcctgcaatc tgcaagactg aagctaagca gctttaaatc ctcctgcgtc 
000061 atttaacccc ctctctgcct ctctgagctc tgagctgctc agctacagct ccctagctgt 
000121 tctgttcgat taattcagct tcgctttgct tggattaatt tgtaggtgac taactcgatc 
000181 acagctcagg tgattggcag tttgatcaca aggcaggaag gaagtagaag tagattgctg 
000241 tagcacacgc tcacctacca agcttctaca ctcgcagcca agctttgatc gtttgcttgc 
000301 tttgcattgc ttgggctttg tgggcaagaa cgtgtctatc ttcttcttgt tcgtctcgtc 
000361 aggcggccat ggggatgagt tcatgcgtga acctatcccg tgtcgccgcc gccgccgcag 
000421 ggagacggcc gggatttgcc ggtgagctgg gaggtcgccg tggtcatggc agaagcgtgc 
000481 ttccggttgt tgctgcactg ccggtgagga ggaagggaag cggttgtggc gtggcgtgct 
000541 gcgtctcctc ctcgtcttcc tcctccgtgc acggcaagaa ctcggcggcg gcggcggagg 
000601 gtcacgccgg cggcattggg atcgcggagt tcctcggcgg caagaacttc ctcatcaccg 
000661 gcggaaccgg gttcctggca aaaggtagta aatctatctt cttcctctct taaatttgga 
000721 tcatccaacg tacgtagctc gcgtctcttc ttgattttgc ttgatcatct ggatcagttc 
000781 tcatcgagaa gatattgcgg acgaatcccg acgttggcaa gatctacgtg ctgatcaagg 
000841 cgaaggacgg tgacgcagca ctgaaaagat tgcacaacga ggttctactt gcgatcattg 
000901 ttcgatccat ttcagagaaa catttgttag tacctatctg ttcatctgtt tgactgtatt 
000961 tttccttttg ttttaactgt gtgatgtgca ggttgtggac acagaattgt tcagtcgttt 
001021 gcaggaaatc catggcaagg attaccacag cttcgcggca agaaagctgg tgcctgtagt 
001081 cggagatgtc agagaagcca acgttggcat cgcccctgag cttgccggcg tgatcgccga 
001141 cgaggtcgac atcatcgtca actcagcagc aaacaccact ttcgacgaga ggttttgtca 
001201 ttctctgaac tgcagtgttg ctccaaagat gagttcttaa ttggatcact tcatgtataa 
001261 taagcatatg aattgatcac tgttgctgca tttggttcga ttttgcaggt acgatgttgc 
001321 aatggacatc aacaccgtag ggccattcag gataatgagc ttcgcgcagc ggtttcggag 
001381 gctgaagctg ttcttgcaag tgtcaacagg tcagaaatgc atgtcaaatg aaaagctctt 
001441 gtgctgaaaa cttgcactga aattacctcc aaaaacctta gatatatctc tctactgtgg 
001501 attttgaatt tcatgtttgg caatcagcat atgtgaacgg acagaggcaa ggtgtggtgc 
001561 tagagaagcc atttcgcttg ggggacacca tagccaagga gttaggatct ccagattctt 
001621 cacaacacaa gaacaccatg cttgacatcg aggcagagat caagctggct tttgaccaca 
001681 ggagacacgg tgatgattca gcctctttct ctgaagaaat gaaagagtta ggattagaga 
001741 ggtatacacg caatgccaga aacgtttcaa gtctgaatgt gcagtggcaa gattatgcaa 
001801 ttgcacacat gaaacagcat tggttaattc gcttgatttg ggtttaattt gtagggcaaa 
001861 actccatggg tggcaagata catatgtgtt caccaaggcc atgggagaga tggtgatcaa 
001921 ctccatgcga ggagatatac cggttgtcac catcaggcca agcgtcatcg agagcacctg 
001981 gagggatccc ttccccggtt ggatggaagg gaacaggtac aaattgtaaa tcaaagttca 
002041 ccaacttaaa ccaattttag ttcatgagat aatttagttt acgatgaatt ggcattgatt 
002101 ttggcgaaat gaatttgagc ttgattagga tgatggatcc tgttgtgctg tactacggca 
002161 aaggccagct gagcgggttc ctcgctgacc cggagggtgt tcttgacgtg gtaatgatta 
002221 agcagatgat taaattcgct aattgcgatt agtggttaat cgattaacta tggcgatttg 
002281 tgatggaagg ttccggcgga catggtggtg aacgcaacgc tggcgtccat ggcgaagcac 
002341 gggcgcggcg gcgcggcggc ggcggcggcg gcggcggagg ggatgcacgt gtaccacgtg 
002401 gcgtcgtcga cggtgaaccc gctggcgttc ggcgacctga gccggttcct cttccagcac 
002461 ttcacggggt cgccgtacag cgacgcggcg gggcggccca tccacgtgcc gccgatgcgg 
002521 ctgttcgaca ccatggagca gttcgccagc tacgtcgaga ccgacgcgct gctgcgcgcc 
002581 ggccgcctcg ccggcgccgg cgccggcgcc ggagacgaga gggtgtcgca gcggctgcgc 
002641 gagctctgcg ccaagtccgt cgagcagacc atctacctcg gcagcatcta ccagccctac 
002701 accttctacg gcggcaggtt tgtttcctag atcgttcgtt ttatttaaaa acttttgtga 
002761 aatatataaa actatatgta tacgtataaa tatatttaac aataaattaa ataatataaa 
002821 aaaattaata attacttaat ttatttctaa taaaactaat ggtcaaatat atttaaaaaa 
002881 gtcgatggca taaaatattt taaaacgggg gagtatattc gtatataccc gccatggata 
002941 atgcattgtg aatttgagat gctgatgagc tcgatcgccg gccatggcgg cggcggcagg 
003001 ttcgacaatg ggaacacgga ggcgctgatc ggggagatgt cggaggagga gaaggcgcgg 
003061 ttccacttcg acgtgaggag catcgagtgg acggactaca tcaccaacgt gcacatcccg 
003121 gggctcagga agcacgtcat gaaggggagg ggcgtcggcg gcggcagcgg cgcgtcgtcg 
003181 tcatcgaacg cctcgctgct cgccggcgcc tccgtttgaa tggccaggcc ggcgccggag 
003241 aagaggagga tgcatgcgcg gcgtgtacac taggctagat tgttgttaac ttgttctgcc 
003301 gtggcagtct gacagatgat ctttgtgctg cagtaattaa ggttgatagt atgttatctc 
003361 t

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ654714 whgc19a04 743
more... (Total Hit Count: 2 )
/rice/oryzabase