cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK120692     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0351500 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 13,229,402 -  13,232,502  ( + ) ;   3,101(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 13,229,402 -  13,229,483 ( + ) ;   82 (bp)
Exon 2 Location 13,230,565 -  13,230,652 ( + ) ;   88 (bp)
Exon 3 Location 13,230,745 -  13,230,846 ( + ) ;   102 (bp)
Exon 4 Location 13,230,971 -  13,231,066 ( + ) ;   96 (bp)
Exon 5 Location 13,231,321 -  13,231,352 ( + ) ;   32 (bp)
Exon 6 Location 13,231,501 -  13,231,576 ( + ) ;   76 (bp)
Exon 7 Location 13,232,038 -  13,232,091 ( + ) ;   54 (bp)
Exon 8 Location 13,232,205 -  13,232,502 ( + ) ;   298 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os03g0351500 Os03t0351500-01 215411 J013169L20 9376 LOC_Os03g22810.1 AK120692 34404 AP008209.2 255674134 BAF12032.1 113548589 NC_008396.2 297602023 NM_001056653.1 115453034 NP_001050118.1 115453035 Q0DRV6 SODC1_ORYSJ


Chromosome: 3 ,  position: 13,229,402 - 13,232,502 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agaagctcca gattccaaac cagcaggagt cgcctcgcct cctccttcat cctcctcgtc 
000061 gtcgccgcgg gggtcgcctg aggtaggaat cccaacaacc cccccccccc ccccccaccc 
000121 aagcaagctt ctagggtttt cgaccgcgcc tcgcttcctc cggtttcgtg ggaggcggtg 
000181 ggtctccctc cctccctgcg tgtggatctc agatgggatc ggtgtttcct tgttggtctt 
000241 gctgcttcgc ggggatttgg ggcttcgggc gggctggggg tggggggggg gattgttgtg 
000301 gatgttgatt gatcgatcgg tgttgttggt tcggggcgat tggttggttg gtggggagga 
000361 acggctcgtc tcgtgtgttt gaatccatat gcaagttcaa gtgatgcgag agtgttttga 
000421 tgcgtggacc tgctgcttcc tttttttttt ttccttttga gcgatgattc gtgctgctgc 
000481 ggagggatac ggatttgtta gttgccgatt actagtaata atcattggaa ttgtgtactg 
000541 ggctctggct gctcatgatg cgatgggctt tgtgatatgt tcatgattag atttagacat 
000601 gttttttctg caagtgtgga gttgattgca gagtgtcctt ccctgatatg tcgggggatt 
000661 gggtggatgt agagaattgt agatttggga gttattggac tagccaacag acagtttcct 
000721 cgtgaattcg atcccttcat gcagaaatga atggagggat aggatgaaat ggggtgagaa 
000781 gaatggatag ctaagattga aacttaccct ttagatgggt gggaaatcat atcccaaacc 
000841 gattttctag ggataattcc tctatactag acgtgtgttt tgtttgtatc tagtatgttt 
000901 gcagtgggca gtggcatttg ttctatgatg cctttggttt acatgctttg gaaaaaacaa 
000961 tagatcattg ggccatattg ttatcttttt ctgactagta gtaaatgatg cgtctgtgtt 
001021 gcttctgctt taacatcttt tcaatcttca ctaggataat ttcatagttc aatatgttct 
001081 ttgggaactt ggttgggttt taggacctct agaggctact tctgccactt gctaagtaac 
001141 tgttttgtgg aatttgttta cagatcacat taacaatggt gaaggctgtt gttgtgcttg 
001201 gtagcagtga gattgttaag ggcactatcc actttgtcca agagggagat ggtatgccat 
001261 cagtcatcac cattttcatg attgtcttga attgaatttt agtccttgaa tcgttgagat 
001321 ttactggcat gtttgattct taggtcccac cactgtgact ggaagtgtct ctggcctcaa 
001381 gcctggtctc catgggttcc atattcatgc acttggtgac accaccaatg gttgcatgtc 
001441 aactggtaat tattattgtt attacatata tattggcttc tcgcctgcct agatgtacca 
001501 tcaggattga tacaggctat catcatctgt tgaattgatt acttatgatg cacttgtttc 
001561 ataatgtagg gccacactac aatcctgccg gaaaggagca tggagcacca gaagatgaga 
001621 cccgccatgc tggtgatctt ggaaatgtca ccgctggaga agatggtttg ttctttttcc 
001681 ctttattccg aatttttatt tgttccatac ctgttaatga tttaacataa ccatattagt 
001741 tgtggtcttg tagtccttaa ctcattgtca atttgtagta atactttatt ccgaattttt 
001801 atttgttcca tacctgttaa tgatttaaca taaccatatt agttgtggtc ttgtagtcct 
001861 taactcattg tcaatttgta gtaataattg ttgctgagag tttatttctc tgctgtcagg 
001921 tgttgctaat atccatgttg ttgacagtca ggtaagtaaa cattcagaaa aagaacattc 
001981 tccgtcattt gatttatgga accaatacca cacatcccct tattattctg ctgttacctt 
002041 gtcttttcct tctttctttt tcctgtgtgt taacatggat aaccatttat ctgtgtcaga 
002101 ttccacttac tggaccaaat tcaatcattg gcagagccgt cgttgtgcat gccgatcctg 
002161 atgatcttgg aaagggtaat attacagaca actgtttgtg ctcatttatt ttgtctgtgt 
002221 gcttgtgtgc tccttttctt ctcttttgct aaggaagatc tcactactgt tgggtctatg 
002281 atgacaacaa tcactttcta ttgaatggat tgcataaaca tgctgagtta gtagtcagaa 
002341 atgtgtaggg tccttttgtt ttatcatacc aagttgcaca cgactgtgtt gtaggcattt 
002401 ttacctttgg gggtaaagga tatctgaact ttacatggaa aatttgaata agttgttctg 
002461 ctatgccagg cactatttga cttgaatctc ctatctgtgc acttcaccat aaactatttg 
002521 acttgaatct cctatctgtg cacttcacca taaacctatc tgtgccaatt ctcattgcag 
002581 tgagccagtt atcagtgcag cttaaataac attcattggt tttggtgctc ttttaggtgg 
002641 gcacgagctg agcaagacca ccggaaacgc tggtggccgt gttgcttgcg gtaagttcag 
002701 aggccgtaca atccagccca cctgaaaatc agcttcgtgt cacatattga tcgactcacc 
002761 acttcatctc cttttctcta attctttccc aattttactt cagggatcat cggacttcaa 
002821 ggctgaaacc tggaggtgtg aactcacctt ccatctccca gcaccagaag cctgaaactc 
002881 tacgagctct tagccgtttc gtctttacct gagtggctac tctagattct acaataagca 
002941 cctgatctct gcgcatggtt tttggtgtac cattctgtcg cccgcatcgt tggcgcccaa 
003001 tgaactatgt gttttgtgtt aaaccttaag ctgaagggta ccatttgtag actcgatgtt 
003061 gctctcttcc tcggaatgtc gttacatctg ttcgctcgtt t

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY840689 baet48a03 424
more... (Total Hit Count: 52 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ848369 whatlal9d04 684
more... (Total Hit Count: 749 )
/rice/oryzabase