cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK120259     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0207300 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 5,664,062 -  5,668,690  ( - );   4,629(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 5,664,062 -  5,664,336 ( - );   275 (bp)
Exon 2 Location 5,664,470 -  5,664,538 ( - );   69 (bp)
Exon 3 Location 5,664,639 -  5,664,702 ( - );   64 (bp)
Exon 4 Location 5,664,807 -  5,664,889 ( - );   83 (bp)
Exon 5 Location 5,665,025 -  5,665,090 ( - );   66 (bp)
Exon 6 Location 5,665,213 -  5,665,303 ( - );   91 (bp)
Exon 7 Location 5,665,737 -  5,665,894 ( - );   158 (bp)
Exon 8 Location 5,666,721 -  5,666,915 ( - );   195 (bp)
Exon 9 Location 5,667,388 -  5,667,517 ( - );   130 (bp)
Exon 10 Location 5,668,375 -  5,668,690 ( - );   316 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0207300 Os03t0207300-01 J013046C24 214978 J013046C24 7044 LOC_Os03g10940.1 AK120259 1916 AP008209.2 255674134 BAF11239.1 113547796 NC_008396.2 297602023 NM_001055860.1 115451448 NP_001049325.1 115451449


Chromosome: 3 ,  position: 5,664,062 - 5,668,690 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agagcacccg accccaccca gaagaaggaa aaaaaaaatc cgatcgggcc tcgccgcgcg 
000061 cgccggccac cgccaccgcc accgctacca cgagcgccat actcccctcc ctcctcgcca 
000121 ccgtcggctc cctcgccaca ggcgccgtcg cggcgctcgc ggcggcgggg gcgcacgcgg 
000181 ggtccctccc ccgcgcccgc tcggtggcgt cggtagcggc ggcggcggcc atgtcgacgg 
000241 cccgcgtcta cgccgacgtg aacgtgcacc gccccaggga gtactgggac tacgaggccc 
000301 tcgccgtcga atgggggtaa gaactgattc cttcccacct acgcctcgcc gtgctaccgt 
000361 gtgattgtcc cccccccccc cccccccact cgtgtcgtcg tcgcctagaa taacgtagcg 
000421 atgcgagatg attgcatctg tgactgtgtg tgtgttgctg gagggttggg gatagatcgt 
000481 acgattgaac tgcggagatt gtgcgagctg cgaactagct gttgtcgatc ggtgtgttgt 
000541 tcggcagtgg tatcgctcga tgtggctatt gggtctggtc atcatcgtgt tgccaattta 
000601 gagttggacc ttctgttttt gatactgtat atttcgaaac ctttgttacc aagctatgat 
000661 catacaattc ctttcatctc ggtgatagtt tgaagtttga caggaaggat tagttgctaa 
000721 agttttccta attgtagttg gggaggtata tatatattag ttgaacaaat gggcactgtt 
000781 cttcaatact attgatggcc tttttttttg gtgggtcatc tgactagatt tatcatgtga 
000841 gctgtgtgtg cattgaggga actacattct acactactaa aatcactcac aaatatattc 
000901 attgagggaa accattttat ctcaatgtat ggccagagga ggttttggtg aaataaacta 
000961 gatttgcacc aaccaatatg cctaactgga taatagacag catttacatg accatatatt 
001021 gttatcatga ttaaaaaatg ttcttctacc ttgctaatat ctatttgact gttttaattg 
001081 acaacttggg ggaatgtgaa gtaaaaaaaa atcaaactat ttattttctt ttagttatgc 
001141 tctgttacca atggattgtt cttctccatt cagtgagcag gatgattacg aggttgtgcg 
001201 aaaggtaggc agagggaaat acagtgaagt cttcgaagga attaatgtga caaatgatga 
001261 gcgctgcatc attaaaattc tcaagcctgt taagaaaaag aaggtatcct tgttttcttt 
001321 gaaaattaac atatatggat gttctgctta aattattcct cgcgacacac tcaatacttg 
001381 gaacagtttg atggatcaaa cctgcattgc ctacttctct aaacgctgac ttgttccttg 
001441 gttaaatcag ctaaatttta acatcctaat tctgttcaag tccatttgtg ccattttcag 
001501 attttatggc tgttggtact tttgaattca gttacttcat tgaatccagt tactagattg 
001561 tatggatggt ggtacttaag aagttagatt attattaact acagttttta ttatttagtt 
001621 tttgtgctcc tttccactac aatgagcgat ctcacttttg ctcatttgtt ggatatttaa 
001681 cctcatatct tttcttccga actgttctct gtttgctcat gtgcttatta gaattctctg 
001741 tgctattata tatgagcagt ttaattcttt tgcagataaa gagggaaata aaaattcttc 
001801 agaacctctg tggtggtcca aatattgtca aacttcacaa tattgtcaga gatcaacaat 
001861 caaaaactcc aagtttgata tttgaatatg taaacagcac agatttcaaa gttctgtatc 
001921 caacattgac agactatgat attcgattct acatttatga acttcttaag gtagcgcttc 
001981 tgttttaatt tagtcattag tagaagtgtt gaaaatttca gctcttgtga tgaatatagt 
002041 tgtcaatact tgggtctgat tgttcctatc acaccatatt aagctaaact ttgcccaaat 
002101 ccattgtgct acaataagtt cacgcttaca aatcagtttt tgtgctttag tctaacaatg 
002161 atagtttgaa atatctgtat gtacataccc cttcagatgg tgaccattgg ctatgtatgg 
002221 acttaataac aagctcttga attgtgcttg tggagttgtg ggttgtggtt gttccaagtg 
002281 gcattagctt aacatatttc acgatggcat tatggaaagg ctatgcctgg tagatagtga 
002341 ctatgatgca attgttgttt attgcaatgt tgaatgtctt atagaactgt atgcattaat 
002401 ctataaattg attaacttga ctctctagca tacttagtat taatgctatg gcctacagta 
002461 gtttgaatta gaggctgaaa caaatgttgc aactttatgt tctgcttgat tagtcttgca 
002521 tatatggtcc acttataaag tttgtttctt tcatgtcaga cggtaacata gaaagtctac 
002581 ctaattgttt atgtgaatgt actgataaca aaaaggatat gtggtaatta cagaacattc 
002641 tattatattc ttatttagtt actagtttca ataatctccc ttctatggct tccgttattc 
002701 agttgggctt gttcggtgtt cgtcgattta gtagccagga cttatttcta atctcctgtt 
002761 atcttttttc taaattccgt cctgcttacc ttccaggcat tggattactg tcattctcaa 
002821 ggaattatgc accgcgatgt caagcctcac aatgttatga ttgaccatga actccgcaag 
002881 cttcgcttaa ttgattgggg acttgctgag ttttattttc cagagaaaga gtacaatgtt 
002941 cgggttgcct caaggcaagt tcataaaata tgccttcatg attctgtagc tccgtcaatt 
003001 gatggtgtcc tgtttattta aatgtttacc ccatcctatt aaccccaaga agatatctaa 
003061 atttccatta tagaacatta tttatagagt gcttgggact agtttagctt cctattagtt 
003121 tcatattcat atttatggat tatcgtttgt tatttcaata aaaaatatct gaagtgacat 
003181 agccttatgc catcgcttgt tacctttatt ctgcataata tttgttagca aaataattat 
003241 tttgaatttg ctaattttat ggataagcag aatccatcct ctgttaccag tgttatagca 
003301 aatttattgg ttttagaaga ctatataagt tttcttatat ttgaaaatgt ggatagtttt 
003361 atctgcaaac ttattttctt tatccagata cttcaaaggg cctgaattgc tggttgactt 
003421 ccaaagttat gactactctt tagacatgtg gagccttggc tgtatgtttg ctggaatggt 
003481 gtgtttgccc tcctatgatt ataaaataac ctatcaaaat tgccatggcc ttacttctgt 
003541 aaattacttg cgtatagaaa gatagcaact gttatgcttt atttactgtt tttgatgcag 
003601 atatttcgca aggaaccatt cttctatggc cacgataacc atgaccagct tgtcaaaata 
003661 gccaaggttt gctacagttc acatagacgc atgcgcatgt gtttatgctg agcatttgca 
003721 cttgtatctg tatatgtctg ctctgctttc tgcctgaaaa tattgcaggc attagcatat 
003781 tgatgaacta tacctgagca ggttctaggt acagaccagc ttaatgctta cctgaataaa 
003841 tacaggattg cacttgatcc ccagcttgag gctctgattg ggaggtatta cctcgtagaa 
003901 tatttgttct gatgctttca cttcatatca cattttggat tagtaaaaaa aaaattactt 
003961 gatacatttg ttgttgctct acacacaggc ataccaggaa accttggtct aagtttataa 
004021 atccagaaaa taggcatctt gtctctccag aggttatatg catttccttc tcgtcctatg 
004081 atttttcttt tccatatccc atttccctct atcaggagta caggactaaa cgtcgcacca 
004141 atctttgtgc aggctattga ttttcttgat aaacttattc gcttcgacca ccatgacagg 
004201 ctgaccgctc gtgaagctat ggttggttcc tgtcaagcta ttcattcaca ggcttaactt 
004261 gctgttggtc gagcatatgt attgcaaaca gtttgttggc ctggaccctg gatcgcaagt 
004321 ctgtaacata tgctgctttt tgtctcccct gcaggcgcat ccctactttg aacaagtgag 
004381 ggcagcagaa gactgcagaa tgagaacgta acatgaacgg aacgccatct gctgctgttg 
004441 gattgcactg gaaatctgtt gcagatttgc tcctttgttt tattctattc tactgaggca 
004501 acgcaaaagt tgtagcatgt tgcgccttag gtccgcttgc tgctgagcgg tgcctaacat 
004561 ccttaaattt tgaaacacat cataaagtgc cgagtctata aatcagatta tcagagataa 
004621 tctcttttc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV915630 bags15g06 506
more... (Total Hit Count: 19 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ702792 whv16n10l02 806
more... (Total Hit Count: 45 )
/rice/oryzabase