cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK112085     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0725400 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 30,297,052 -  30,300,792  ( + ) ;   3,741(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 30,297,052 -  30,297,763 ( + ) ;   712 (bp)
Exon 2 Location 30,300,209 -  30,300,792 ( + ) ;   584 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
RNA Nucleotide
Accession No
RNA
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os03g0725400 Os03t0725400-03 107158 002102C04 11381 LOC_Os03g51550.1 AK112085 41247 AK112085.1 37988748 BAG99544.1 215767316 NC_008396.2 297602023 NM_001057665.1 115455058 NP_001051130.1 115455059
Os03g0725400 Os03t0725400-03 107158 002102C04 11381 LOC_Os03g51550.2 AK112085 41247 AK112085.1 37988748 BAG99544.1 215767316 NC_008396.2 297602023 NM_001057665.1 115455058 NP_001051130.1 115455059
Os03g0725400 Os03t0725400-03 107158 002102C04 11381 LOC_Os03g51550.3 AK112085 41247 AK112085.1 37988748 BAG99544.1 215767316 NC_008396.2 297602023 NM_001057665.1 115455058 NP_001051130.1 115455059


Chromosome: 3 ,  position: 30,297,052 - 30,300,792 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 aaacccttgt tcccttcccc gtctccggtt ggcgcggcgc ggggcaatgg cggcggagga 
000061 caacccgggg tacgccctgc gcgcgacgct ggcgggccac cgccgcgccg tgtccgccgt 
000121 caagttctcc cccgacggcc gcctcctcgc gtcggcctcc gccgacaagc tcctccgcgt 
000181 ctggagcacc tccgacctcg ccagccccgt cgccgagctc gcgggccacg gcgagggcgt 
000241 ctccgacctc gccttctccc ccgacggccg cctcatcgcc tccgcctccg acgaccgcac 
000301 cgtccgcatc tgggacctcg gcgacggcgg cggcggcggc ggcggcggcg agccccgcct 
000361 catgaagacg ctctccggcc acaccaacta cgccttctgc ctcgccttca gcccccacgg 
000421 caacatgctc gcctcgggct ccttcgacga gaccgtccgc gtctgggagg tcaggtccgg 
000481 gaggtgcctc cgcgtgctcc ctgcgcactc cgagcccgtc acctccgtcg acttcaaccg 
000541 cgacggcgcc atgatcgtct ccgggagcta cgacggcctc tgccgcattt gggactccgc 
000601 caccggccac tgcatcaaga ccctcatcga cgacgagagc ccgccggtct ccttcgccaa 
000661 gttctcgccc aatgggaagt tcgtgcttgc cgccactctt gatagcaagc tggtgagttt 
000721 cttcaaaact tctccctcaa cttgcagcaa tgcagcatat gtggaaattt gtatttgcta 
000781 gtatgtgatt ttgtgaatgt atttattatg tgcttcgtta gaatgcgaaa cttaaaacta 
000841 ttagctgtcc taggattgca atgctagagc aattatttca tcgtagatcg cagccagtgc 
000901 ggtacatggt gccagagtag attgactgga aactaagggc ttagtgttgc caggttgtcc 
000961 agtgaggatg ctgccaatga aggcattatg ggggtaatta taggatctgt gtttactagt 
001021 tatgtcagct acccttgttg gtgtcatgtc tgtattgttg gaggtgaaga tggtaattct 
001081 catcttaatc tccttttctg ttgcaaggct tatggagtat gcttaaattt taattttcgg 
001141 aaattaagat tatatccatt tgcaaggtgg cccaagctta attagcaatt acagggacaa 
001201 tgtgttcaca tgttggaact ctggggttga tagcggtgtg caattggcga attttcaaag 
001261 tgagtgtgct gtaattgaag accttaggtg tatttatatg aatcatcgtt cactatttac 
001321 actgggtgta cctttgtcgg tgctgacttg gtggggttca agatgatact tctgatctta 
001381 tcaatgcttt tctgtcgaac cacttatgct ttctgctaat atcagtcaca tattgatgcc 
001441 caacatttaa acccctttat gctatgtcta gcctgggaaa tatatgatgc tttttgggat 
001501 cccttaggta ccaccgaggt tatctgaact tgagaccatg ttgccatgtt gaatccctac 
001561 atcctagctc ttggaaaaag ttggtcatat ggaaatgaaa tgtccttgtg aacttgtaat 
001621 gctacaagga catctctcaa gaaggagaca gaaggattaa ctcaatagat ttaagtattt 
001681 aacagcctca ctgccacaac atgcacacat gatcttgcag ttgtgtagat gcatgttatc 
001741 tctatatagt tactatactt gccatgcttt agtagactag tgtgtcgtta gagaaaatat 
001801 gacttttcag tagtttttca aactgcaatg ttgttagtgt tgtgtgcaat cttgaggtag 
001861 tgctagtgaa cctggaaacc tagaaatcca cttgctttcg caactaaaca attttgtgct 
001921 ggttaaggaa gcgctagatg ggtttatctt taggaatata gtttcgctgg ttgttttcag 
001981 agtaaggtga gaactggggc attaatgagt agcttattaa agtttttctg tgtttgaaac 
002041 aagcaattaa taagaggcca aatgaaaata tttagttaac ttgagggatc ataaagctca 
002101 ggaggggtat tttttatata ttgaattata agtgtgtaca ataactatat gggtttcctc 
002161 atgacggatg acgtagagat tgggtattga gctcttacca tgacgttagg atggccaaaa 
002221 tgcttcagta tgcaatagac aaattgtgat tattttatct aatcaatatt ttgttctgtg 
002281 ctgcaatatt gtaaaagaca agtataaatg cttgcttggt acattctcaa attctgacac 
002341 ttatacaggt actttgataa tattagccat cttacagtta cggtgaattg gaattattgt 
002401 tattcttatg taccactgtg tatctatact gaaacatggt tgtttcttaa atacgatgtt 
002461 caacatcttc ctgcataata aaagaaaata tttcatgtag ttaatttttt ttctggtgct 
002521 tatttatttg ggagcctccc ttgaagatca agtcccagtg tttgatcatg gttggagcaa 
002581 tttatcagtt atcatactga acatatccaa ttatctatgt ctttagttcc ccgcttggtc 
002641 cacttggtgt tttaatttgt taaatgcttt acagtatatt aggtccttcc agcaatccta 
002701 tcaacctcca tcaatgctgg agacaattct tggtaccatt tctcaagaaa ttggagttgg 
002761 cctatcagca agggtactac acccagcaga tcctaaaaat aatatctcca cattgtttta 
002821 agaggttaaa ttgtagtgcc atttagcaaa gcacattgct cttgggcctt ggctgtgtac 
002881 aattatatcc tatgcgctac ctaactcagc agagtccttt gtgtacaact gaatattatg 
002941 tagtgattct gtgacaacaa tcccaacctc accaaaccat tttctgtaca actgaatgga 
003001 tttatgtagt gcactgatac tttaaagctg ctgcctgttg gaggtttttt tacttgacat 
003061 cagtattgaa tttttggtgt atgttcaggt gtctacagcc tacttacgtg tactttgtgt 
003121 cacaagagca gttctcacat aatgtttatt tatgcagagg ctctggaatt tctcagctgg 
003181 gaaatttctt aagacatata ctggccatgt gaacacaaaa tactgcattc cagcagcatt 
003241 ttcaatcacc aatggcaagt atattgtcag tggctcggag gacaagtgtg tctacatatg 
003301 ggatcttcag tcaagaaaga ttttgcagaa attggaaggt catactgaca cagtcattgc 
003361 agtgtcatgc caccccaatg aaaacatgat tgcatcggga ggacttgacg gcgataagac 
003421 ggtgaaagta tgggtccaaa aggaggaaga tcagatggaa gtctaagtga gttcttattg 
003481 tctcgactgt catgtaacct gactgatgat ggttggtaag ctacttagct tccagactaa 
003541 ttatagattg gtgtggtggg gaatgtaatt ggatgctgct ttatcagctt ttctcctggc 
003601 ttcgtgggtt gtgttctggt gaactcttaa tgaattggga tggttgtaac aaagcctgga 
003661 cataaagaat tcttaaactt gatctgctcc cttttgtagg ttatttgcct ctatgtgaag 
003721 ttactatgcc tatgaaaatg c

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY850310 bast19c07 481
more... (Total Hit Count: 3 )
/rice/oryzabase