cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK111510     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0634400 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 25,037,347 -  25,038,905  ( - );   1,559(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 25,037,347 -  25,038,905 ( - );   1,559 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os03g0634400 Os03t0634400-01 J013001I04 200344 J013001I04 336 LOC_Os03g43440.1 AK111510 29215 AP008209.2 255674134 BAF12632.1 113549189 NC_008396.2 297602023 NM_001057253.1 115454234 NP_001050718.1 115454235 Q75GK4 CIPK7_ORYSJ


Chromosome: 3 ,  position: 25,037,347 - 25,038,905 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atagtaacca gctgctgctg ctgccgccct cttctttgtg ttgccttgtt gttggtgtcg 
000061 cgcgcccgcc atggccgcca ccaagagcaa ggcggccaag aagggcgctc cgctcctcgg 
000121 caagtacgag ctcggccgcc tcctcggccg cggcaccttc gccaaggtct accacgcccg 
000181 ctccctcgcc cccggcgccg accccgtcgc cgtcaaggtg ctcgacaagc ccgacctcgc 
000241 cgccgccggc gccggcatgg ccacccgcgt cctccgcgag gtcgccgcca tgcgccgcct 
000301 ccgccacccc aacgtcctcc gcctccacga ggtgctcgcc acgcgctcca aggtgtacct 
000361 cgtcatggag ctcgcccccg gcggcgacct cctctccagg ctcgcctcgc tgccgtcgcg 
000421 ccgcctcccc gagcacgccg cgcagcgggt gttcctccag ctggtgtccg cgctcatcta 
000481 ctgccacgcg cggggcgtgt cccaccgcga cgtcaagccg cagaacgtgc tcctcgacgc 
000541 acacggcaac ctcaaggtct ccgacttcgg cctcgccgcg ctcccggact cgctccgcga 
000601 cgacgggcgc ctgcacaccg cgtgcggcac cccggcgttc gcggcgcccg aggtgctccg 
000661 ccgcaaggcc tacgacggcg ccaaggccga cgcgtggtcc tgcggcgtca tcctcttcgt 
000721 cctcctcgcc ggccacctgc cgttcgacga ctccaacatc gccgacatgt gccggaaggc 
000781 gcaccgccgc gagtacgcgc tcccgcggtg ggtgtcgcag ccggcgcgcc gcctcgtgtc 
000841 gcgcctcctc gacccgaacc cggccacccg cctcgccgtc gccgagctcg ccacccaccc 
000901 gtggttcaag cgctcgctca gcctcgactc gcagctcggc agcctcctcg gcggccagcc 
000961 ggagcgggag ctggcgttcc aggcgccgcc gccactgaac gcgttcgaca tcatatccat 
001021 gtcgccgggg ctcgacctgt ccgggctgtt cggcgagagc aagcgccgcc gggagaagcg 
001081 gttcgtgacg acggcgtcgc cggagcggac ggtggagcgg ctcggccagg cgggcgccaa 
001141 gctcggctac ttcatggtgg gcaagaaggg cgtcgaacgc ctgcccctgg gcggcctctc 
001201 gggcctcgtc gccatgtcca tggagatgtc ggaggtgtcg ccgtcgatga tgctcgtcga 
001261 gctgaggctg gagggaggcg acgacggcga cggcgacggc ggtgccgagg agttcgggtg 
001321 ggaggagctc agggcggagc tcggcgacga cgtggtgatg gcatggcatg gctgcgatgg 
001381 agggaagaaa gacaaggaag ggattctttt gtaggacatg gactttgtca catgtatgat 
001441 gatgtatatt agtaggattt tgtggcattg ttgtgtcaaa gattatagat tgttagttca 
001501 atctaattac gatgttttgt gactaaattg ttggtaggaa tggatctaga tcatttgtg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY850228 bast18c09 460
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ535139 rwhei13h06 634
more... (Total Hit Count: 6 )
/rice/oryzabase