cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK107637     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os03g0727000 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 3
RAP - Location, Length 30,407,342 -  30,416,860  ( - );   9,519(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 30,407,342 -  30,407,912 ( - );   571 (bp)
Exon 2 Location 30,408,991 -  30,409,223 ( - );   233 (bp)
Exon 3 Location 30,415,904 -  30,416,048 ( - );   145 (bp)
Exon 4 Location 30,416,134 -  30,416,255 ( - );   122 (bp)
Exon 5 Location 30,416,394 -  30,416,411 ( - );   18 (bp)
Exon 6 Location 30,416,588 -  30,416,860 ( - );   273 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os03g0727000 Os03t0727000-01 110489 002131E10 17165 LOC_Os03g51690.1 AK107637 15693 AP008209.2 255674134 BAF13053.2 255674861 NC_008396.2 297602023 NM_001057674.1 115455076 NP_001051139.2 297601619 P46609 KNOS6_ORYSJ
Os03g0727000 Os03t0727000-01 110489 002131E10 17165 LOC_Os03g51690.2 AK107637 15693 AP008209.2 255674134 BAF13053.2 255674861 NC_008396.2 297602023 NM_001057674.1 115455076 NP_001051139.2 297601619 P46609 KNOS6_ORYSJ
Os03g0727000 Os03t0727000-01 110489 002131E10 17165 LOC_Os03g51690.3 AK107637 15693 AP008209.2 255674134 BAF13053.2 255674861 NC_008396.2 297602023 NM_001057674.1 115455076 NP_001051139.2 297601619 P46609 KNOS6_ORYSJ


Chromosome: 3 ,  position: 30,407,342 - 30,416,860 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 aggagagctc gatcgctgca ccaatacttc actggagatc gcctagctgc agctagctag 
000061 cttatcctgc gtgtcttgag cttctctcat ggaggagatc tcccaccact tcggggtcgt 
000121 cggagccagc ggcgtccatg gcggccacca gcatcagcat caccaccacc cgtggggttc 
000181 ttccctgagc gccatcgtcg cgccgccgcc gccgccgcag ctgcagcagc agcagacgca 
000241 ggccggcggc atggcgcaca cgccgctcac gctgaacacg gcggcggcgg cggtcggcaa 
000301 cccggtgctg cagctggcga acggcagcct gctcgacgcg tgcggcaagg cgaaggaggc 
000361 gtcggcgtcg gcgtcgtacg ccgccgacgt ggaggccatc aaggccaaga tcatctccca 
000421 cccccactac tcctccctcc tcgccgccta cctcgactgc cagaaggcaa gtcccacaca 
000481 catgtggtag cctagctagc tacctccatg catgcatgct ctcgccgccg cgcgcatctc 
000541 ctacatgatc tcatgtcaag ctcgctctca gcttacatag cgtatgtgtc gtggtgggtt 
000601 gcaggttggg gcgccgccgg aggtggcggc gaggctgacg gcggtggcgc aggacctgga 
000661 gcttcgccag cgcacggcgc tcggcgtcct cggcgccgcc acggagccgg agctggacca 
000721 gttcatggtg agctcgcaat ctctcactct ctttgttgct cgccttcctc ttcgatatct 
000781 tgagctcgct cgccggcggc gtgcgtgtgc aggaggcgta ccacgagatg ctggtgaagt 
000841 acagggagga gctgacgagg ccgctgcagg aggccatgga gttcttgagg agggtggaga 
000901 cgcagctcaa cacgctctcc atctccggca gatcgcttcg caatatcctt tcctccggta 
000961 acacaacaca tccatccatc cttccatctt cttctatcca tgtactaatc cattgcatgt 
001021 catcttcttc gatcgatctg ctggtttata tcacggtttc atcggctttg ttcttgctgt 
001081 cccttttgtc catttgattc gatctatttg ctggtttgct gacggtttga tttggtctat 
001141 ttcttgcatc taccatgtgt gatttctggg ccaggaaaaa cgcatctgtg tgttcatgtc 
001201 ttttttttcc tcgtacatgc atgcgtgtca gtgaaccctg cagatgatct ggtctgctgg 
001261 ctcggtgttt ggtgctctaa atcccgcaag ttctcatcag ggtttccaaa agattctttt 
001321 cccctgattg cttttcttgg ccatgcatgt gggattcttc catctgggct tctaccgctg 
001381 atcatttctt ctgttgggaa ggaatagtag tcaccggcac atgtgcatct cagtgttcag 
001441 tgcagctact agcacactga cgattttgtg gtctggctct tcagatatct cctgatgttt 
001501 ttgctatatt taaaatcgat accctgatta gaaaaagatt aagctaaaga gtttaagtac 
001561 atttcgcaaa acctggggat tcgggacatt cgtaacatta tctggggtag tgctaaacat 
001621 ttttgcccca aatcttaagt ttcttgaaat aaactgcaga accttggggt ttttacatta 
001681 tagatatccc aatacctagg gttttcggaa attaataaat ctactgtaag ctaaatcatt 
001741 ctaaaatcat agtacatctt catctccatc ttcatcttga ggaataatat gtccctaata 
001801 tcattgaggt tctcccttgg gttctcttgg cgtttatgca actcttttat ttttttttag 
001861 ataatggaaa attttatata ctatgcctct catgccggca gctggttgag tttcgattcc 
001921 ctttctgaaa gaacatgtgc atgtgactct cccgagtaga gagaagaagt tctttggctc 
001981 agccacatct tttccccggg atggaaacaa aggcggtggt gatgagagga gtccgtcctt 
002041 accatgttct tcttctaggg ttttgggggt aaaggcttta gctcactgtg caagcaaaca 
002101 gtgcgtagcc gaggagtctc actgccgtat gtcagtggag caaggacaca catgttgtgt 
002161 gttttactga tccctctgca caaacatctc acatagagag agagagagag agagagagag 
002221 atgtacatgt tcagagatgc atcccccatc tgtcacgcaa ggccagaaca atattcttgt 
002281 catctttcac tccccctgga gaaacgaagt ggctacctgt tgtcctagaa tctctcttct 
002341 cttggttatg tgaggtggtg ttgttgctgt ggtcttccag attgttgtgt ggatacacag 
002401 tgcctgcctg tgttcttgtg gtgttcttct tttagtcttt gctaaatttt aaaatgtaga 
002461 catcaggtgg ttccagatag gccttctcta atgacctgtc acgagagcat agtaagtagc 
002521 agtaccagca cacagttgac actctcactg tgcagggttt ttcgctcatc aggagctgta 
002581 tccatgcatg cacaggtgct gctactacta tgccacacaa tcacttcatt attggagcat 
002641 gtagtagggt agaagctgcc atctcatgtg tgttgcatgc acagaagcag gatatcaata 
002701 gtgaattcag atgcatatgt gtagaaattg attaaaaccc tgaacaagtt tgttgaaata 
002761 ggaaacctga acaggtagtg aggtcagtct tgtgtagaaa tccaatggtc agatagatgt 
002821 attcctacac actctactat atacgtagta ggtagacaga tgagtaaatg ggatagtata 
002881 ctatacagta ggtcagtctt gtgtagaaat ccaatgtaca gcagtatact ccatgacttg 
002941 gtattctgtg ttttctgacc agtgaagtcg catggacaga acggtcagag ctagcctcga 
003001 gaaagataca gttaagcaag agcatagcct attatttgat gtgagatctc cttgcaatat 
003061 tttgggtgat ctccttggct atactagtag taccagtatt atatactcca ctatagagta 
003121 ctactcgtgt attttttgcc agtcttcttc tagttctctt cattctctct catagatgta 
003181 atggcggtca agaaacattg gatgctttcc aaggctagtc cgagttcaaa tgcgtctgta 
003241 tttttcagct gtcaactcat ttcttctcag gttcaattgt tctttgtcct actacttgga 
003301 cctaggtaga cgcacatcta ctctatatgc gttctctttt ccaaaaaata tgactggctt 
003361 acctgattca cgaggcaacc tgaatatcac ccggtcaagg ttgcaggtga tcattcctaa 
003421 ttgtgtttag gaccatagct tgattttaat cacaaaacaa cactgcattt ttctgactga 
003481 tgttgcacct gatgtactcc aagattcttc gttgcatgca ttctttcaag gccatgcaaa 
003541 agcaggggac acagatatca cgagtttccg tttgtctcga ggcaacacca aaagagatac 
003601 tgaaactttg cttgctaaaa agcaaacaaa agaaaacaat gggatggaaa agagctgact 
003661 gattttgcaa tggaacgtac gtcactagaa aagacaatgc atgcaactgg aggacagtag 
003721 tatgactcga caaattgagt taacaaaaat tttttggatg ataattgttc ccctcatgtc 
003781 tttttgtgat tgccaaatcg atagtgttgg ttcttccatt tctaaattcc ggagtttctg 
003841 tgtctggcat tcctttttct tgatgtgtca gacatcttct gtacatttag tctgaggttc 
003901 tgctgggtaa tgaaggtcct cttcgtttgc ttctgctctt aattttatta gctgtagttt 
003961 ttggttaatg caagttaaaa caaaaatatc tctttaatta acttagttct tcaaaattga 
004021 gtcttaaaaa tcctacaaat attgcaactt gcatgatgca ttccatcaat attttgtttg 
004081 catgcgagtg cagctcctag aacactctct tgcttttctt tttccttttt taatgtaaag 
004141 ctgctatatt caataatata tattttcatc tatttagtga acacaaagga actatttagg 
004201 cagtgattcg gctacctctc ccagttgatt gttctgtttt ttccttggca ttattttcgc 
004261 atagatacta atgtttctta tttatttatg aaaaattaag ttgcgcatta tttttataca 
004321 tgattcatgt tatattgacc aaataaagtc ttatagaagt gcaatatttt gtgctacaca 
004381 atacaagatg tgctgtggta gaatttaccc atgactcata ttgtcatttt tgaaaatttt 
004441 cccgtgggtt acatgaaata attgtcttgc tcctgtgaat atttggatgt gtctgacctt 
004501 tttatagatg ttttacaggg agtccgacca agaatgcctg agtcaaaatt agcttctgta 
004561 ttatctttcc ctgtttttct tcattttgca gagtaaacca atgttctctg ctccttacat 
004621 aagcagtaat tcttcacaag ttgggaacaa atgtggggaa aatcgtctaa cccttcattt 
004681 attgatcctt gtttcccccc taatgtggcc ttatgtttta gaacttcatg caagtaaccg 
004741 atatgcatga ttacatgaat atgctagcac catcatccat gagttgcaat tgatcataac 
004801 taaatatata ttaaatattt aaaacatgaa ttttttaaat aaatgataaa taattgtgct 
004861 gaaatgttga acatacacaa gtatgctact agtatattgt tttaaagcaa atcgttacaa 
004921 aaaaaagaca cacatacctc caaatttacg gctgcaaaag ttccagtgta aggatgggtg 
004981 tagaacctgg cttcgccctg cacttctttt aaagagcaag atgagatgat gaagcaatgc 
005041 cgcaagttca aaagctgttt gacaagtaca aataattctt ctttatattc tgtagaaatg 
005101 cacaaataca aaattatgga tgttgtacca ggcctttgta tcctacattt aactagaaac 
005161 acatcttttc ttagatagga gaggttttgt ggctttgaaa aatactcgta gggtagagaa 
005221 tttaacatac aggtggcaat tgaacaacca ttgtgtccaa agcgaagtta tcttcttctc 
005281 atttctagga tatcagctga ttttcagtag tcttgtatgt acgaattaat ctagcgtagt 
005341 agaggagaga atacccggtt cacccaagct acaaaaacaa ttaaaaagtt gtgaattttc 
005401 acagcaaaat tgataccata gaatcagact ccacaaaatt tcaaatgaac agactactta 
005461 tataagatat taaccattaa gataaacagt ttactggtga gatattgact tgctacacat 
005521 aaaaagaaaa aaaaactagc accacagatt atccaatgca ccaatttagc caatttatgg 
005581 catcagtaac tacgtgcata cactctaaat aaacgacctt ttacagtatt tagcgctaca 
005641 tttagcattg ttctttgcat gtagtaaata aattaaaagt actaaattat tttcctgaca 
005701 actctactga aactgttttg agtgcaatca atctatatat tttgccttgg aataaaattt 
005761 aataggcctg tcgacctaga tatcgctagg acctgtatta tccttgcata attagttgat 
005821 atttactcca caggaagaaa aaaatgttat tccttactaa agctaagtaa acttgtcgta 
005881 gaactatcgt agtactcatc acactcttat cccaatcagg actgtttaca tcagagaaac 
005941 tatctcatct ttgcactaaa agagcgcaaa gggttaacta cactttgaca gttgtaatta 
006001 tttaatccaa gacattattt aagagattta tatactgcat ttcttgtacc taatatgcct 
006061 gataattcac taaaacagaa ttagtcctct tatggttatt tgtagggttc atttctcatg 
006121 cagtgctctg ttatccttga acatggttat tattttgttt aattaatttt ataccccctc 
006181 tgttttaaat tagttgttgt tctaggtttg tcctaagtca aacattttta tctttgacca 
006241 tcaatttttt ttttagaaat tcttgtagtt taagagcatg cgaattatat atgttgagaa 
006301 aatattttct tatggtgaat ccgaaaacat aattctaatg atgttaaacc atatgaattt 
006361 ctagaaaata atagtcaaaa gataaaaatg tttgacttag gacaacaaag ctagaaaaag 
006421 tgatttgaaa tggagggagt aattcttttc agatgctact cctttggtca taaatatttg 
006481 atgtttagga caagatttgg tctaaacttt taaaattccg acaatgaatt ttatattgga 
006541 ataacttaat caaatctaat acatttatgg tattataact ttacttttgg aggtaaatct 
006601 acaaaaagca tttcttttgt tttgaatata agcatttgag aaattgttga tggttgaaat 
006661 ttcaagagtt tgaagaaatc ttgcgcttgc aaatggtttt gatcagagga agtaattgaa 
006721 tggttctttt tctgaaaaaa aaaattctaa cgatgaaaga taagcatatt caactggtca 
006781 tagtcttacc attttatttc gttgtgtcag aatgttttta agatctagct attgaatact 
006841 ccctttgtcc ctaaatataa gggattttgg ttggatgtga cgcacatcca accaaaatcc 
006901 cttatattta gggacggagg gagtagataa tggctagaca aggatgtgtt gagaatattg 
006961 tgtgcttgct ttgtacgctg ttttacaaac actaacttat tatggatggg ttttcttaac 
007021 actactcctg tacaataagt ttttttttct tttttcccct cgagagaatg aggaaagata 
007081 cttaccattt atgtgaggaa aagtttacaa gttactatca cctgacattt tacaccagcg 
007141 gataaattct attataagag tctccttaaa atgggacacc ttcttcttct ttatataaaa 
007201 tgtaggcaac ggcatgactg ttcaaaaaaa aaacttctat tctaagagca agtactgtgt 
007261 tgccagtatc ttcattttcg tagaccatca tctgattttg ttaagcacag tgttcttatg 
007321 tatattttct gctgcaactt aaattctctc gtttgaattc atagcaaaat aggttgcctg 
007381 ttttgtcgat ttcgataggt acagcgccag ctacatatat tgtaaagcta atatgtagtt 
007441 tacatgttat tctcgtccac ccttgtaatc aaatatttat cgtttatctg actgcattct 
007501 ttggtctact taatttaatt tgaataacta ctgaagagat ctacacgttt ttcctgattt 
007561 cttttgaatt agtctaccta tgtgaaccat aatcaatttc ttgtctttgc taactatttc 
007621 gtgtgacatg tttgaaggct cttctgagga ggaccaagaa ggtagcggag gagagacaga 
007681 gctacctgag attgatgcac atggtgtgga tcaggagctc aagcaccatt tgctgaagaa 
007741 gtacagtgga tacctgagct ccctgaagca agaactgtca aagaagaaga aaaaagggaa 
007801 gctccccaag gatgctcgtc aacagctcct caactggtgg gagctgcact acaaatggcc 
007861 ttacccctcg gtaagattca tcatcttctt aattttccat attgatctta tgatctatat 
007921 gactagggat gctgaacatt aaatataagt tacttctagt tttggtacag gcgtacagca 
007981 cagccaacac ctgtgatgtt tgcactgtag attcaggtca gatactcaga tgtaggcgca 
008041 tatagttagt tggtgcatca tccatccctt tgaaatctat cgttatgtaa ttactgaagc 
008101 taaagtaaac catcctgaga atcggaacat atgttgcatg acatacgcat gtttggtgta 
008161 ttcaaatatt tgtagattct atgctatata tatatttgca agctatgacc acctatttgg 
008221 aatgattttt gaaaatttct atagctagat tggaagtcag tcatggtagg cttctggtca 
008281 accaagccat tagttcttgg acatgatttt tattaattat ttgtttttgg tgcgctgtag 
008341 tcattagcat caaggtttgc atcgaaacta gcaggatatt ccttcaaaaa aaaactagaa 
008401 ggataagtaa ctctgtattt tacccaggct atatatatca aacttttgct cttgtatttt 
008461 cttatcattt tccccctaaa accgtcctaa ttttgtagag gcatcgaacg caccaaacag 
008521 tactctttct gtttatctag catttctgtg ctattttttt ttcttttttg ctgggatgac 
008581 cgaagaaagg tcatctaaat gttattaaaa tagaaggaaa aaatggttac aagaaagttt 
008641 ttcattgaca gactatgaca ttattatgca atgccaacaa actattgcaa gctatatcac 
008701 catgcagctt ttctattact cccaccgttc caaaatacga gaatctaggt acgaataggg 
008761 cacgttctgg tttacgaatc tggataagtc gtagtaatac gatgtgtttc atccttgtcc 
008821 taagttctta tattgacgga ggtagtgcta gttatctact accatttctg tgctataaaa 
008881 tataatgcaa gctatcgcca tgcagatttc ctgatcatgg ttatgtatct attttacatg 
008941 tggagcagga gagtcagaag gtggcactgg cggagtcgac ggggctggac ctgaagcaga 
009001 tcaacaactg gttcatcaac cagaggaagc ggcactggaa gccctccgac gagatgcagt 
009061 tcgtgatgat ggacggctac cacccgacca acgccgccgc cttctacatg gacggccact 
009121 tcatcaacga cggcggcctc tacaggctcg gctagctagc tagcctactc cttatcccca 
009181 gctaccatga cctagatcga tctcgacccc aaatcaatgg tcgctaagct actgaaaagt 
009241 ttgtgatgag aattgaagaa cctaggttag tcttcctggt aatttgatgc tcgcgcgtac 
009301 gcacgccatg gatggctgcg tgcttatttt gtttcttgcc gcaatatgta atgcaattgc 
009361 cttagctaat gcatcaactc gggtcggttt tagctgctgc tgctgcgcca caatgaggtg 
009421 gttgtggtta tgcttttgtg tggtttaata cgccaagacg tacacattgc ttcgaaatgt 
009481 cgctactctt gctgctgcta attaagtgcg tgtttgaat

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AK248600 FLbaf126d22 1703 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ305286 whyd29j07 640
more... (Total Hit Count: 5 )
/rice/oryzabase