cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK106743     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0159600 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 3,183,494 -  3,184,934  ( - );   1,441(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3,183,494 -  3,184,026 ( - );   533 (bp)
Exon 2 Location 3,184,112 -  3,184,429 ( - );   318 (bp)
Exon 3 Location 3,184,516 -  3,184,934 ( - );   419 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0159600 Os03t0159600-01 109594 002115B06 16481 LOC_Os03g06360.1 AK106743 16501 AP008209.2 255674134 BAF10944.1 113547501 NC_008396.2 297602023 NM_001055565.1 115450858 NP_001049030.1 115450859
Os03g0159600 Os03t0159600-01 109594 002115B06 16481 LOC_Os03g06360.2 AK106743 16501 AP008209.2 255674134 BAF10944.1 113547501 NC_008396.2 297602023 NM_001055565.1 115450858 NP_001049030.1 115450859


Chromosome: 3 ,  position: 3,183,494 - 3,184,934 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 cacattcaca gcgcagacca cacacgatct cactacaata gtgctagcta cgacgagagt 
000061 gtactaggac gatgagccag gagcagccga ggaggccgtc ggagaaggcg gccggcggcg 
000121 gcggcggcga gcaggggatc cggtatggcg acgtgttccc ggtgaccgga agcctcgcgg 
000181 ccaagcccat cgccccgcgg gacgcggcga cgatgcagtc ggcggagaac ctcgtgctgg 
000241 ggaagacggt caagggcggc cccgccgccg ccatggagtc cgcggcgagt cgtaacgagg 
000301 agatgggcgt cgtcgggcat gaccaggcca cggacgccgc cgccgagcag ggcgtcaacg 
000361 tctccgacac cctcgtcccc ggcggcggcc gcatcgtcac cgagttcgtc gccggccagg 
000421 tcacacactt cgtcgtcgat cgacgtctct ccgctgtgcg tgcagcgtga acgatctccc 
000481 ttttctttct tttttttttt tgcaggcggt gggtcactac gtggagcagg acgatggcgc 
000541 cgccgtggtt gcaggagtcg tcggcgccgc ccccggcgcg gtacgggtgg aggaacctgc 
000601 gaagataaca atcggcgagg cgctggaggc ggcggcgctg gcggcaggag ggacgccggt 
000661 ggaacgcagc gacgcggcgg ccattcaggc ggccgaagca aaagccaccg gcacggacac 
000721 ctacatgccc ggcggcttgg cggcgcaggc gcagtccgcc gccgtggcca acctctggac 
000781 ggcgcgcgac gccgacaaga ccaagctcgg cgacgtcctc tcggtgcgcg ctctctttga 
000841 tcatatcgat cttgcaagct aagctagcta ggtaggtagg agtactatac taacattggt 
000901 tcatgcagaa cgcgacggcg aagctcgcgg cggacaagga ggtggagagc ggcgacgcgg 
000961 cgagggtggc cggagcggag atgcgcaaca agcccggcgc ggcggcgagg ccgggcggcg 
001021 tggccgcgtc catggccgcg gccgcgcgcc tcaaccgcgg cccaacgaca tgagtggata 
001081 cgatccacgc atcgatccat gtgtatcaaa cagctcgtgt cgcgacgcga gcgcgatgta 
001141 aaattaacac gcttcggtgt acgttttata tgcttccatc ccttctagtt tccgttgttg 
001201 cattgcatat ggccatatgg gtggctgaag ctatgttaga atctgtcaga agccgtttct 
001261 tttcagttag cctgtagctg ttctctagct agttctttgg ttcggttgga ctgaattgga 
001321 tcgtgggagt acggtcagga gtggatccag atcaatcagg tgtttttttt ctgttatgca 
001381 tgtaacaaag tctgtaatcg aggagaataa atagaaaaac cagaaaagct tacgctgcac 
001441 c

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY848881 bast01f01 410
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ290622 whsl19i21 523
more... (Total Hit Count: 4 )
/rice/oryzabase