cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK105821     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0391400 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 16,223,868 -  16,225,720  ( + ) ;   1,853(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 16,223,868 -  16,224,694 ( + ) ;   827 (bp)
Exon 2 Location 16,225,134 -  16,225,720 ( + ) ;   587 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0391400 Os03t0391400-01 001203D07 108670 001203D07 16027 LOC_Os03g27370.1 AK105821 35195 AP008209.2 255674134 BAF12195.1 113548752 NC_008396.2 297602023 NM_001056816.1 115453360 NP_001050281.1 115453361


Chromosome: 3 ,  position: 16,223,868 - 16,225,720 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 catcgccaag ggcgggccga gggagccatg gcacgacatc cactgccgcg tcgagggccc 
000061 cgcggcctgg gacgtgctcg acaacttcga gcagcggtgg cgcaagcagg ccggcagggg 
000121 caaggacagc cttctggtca ccctcgaccg gagcatggcc gcgcgcgacg ccgaccaggc 
000181 cgacccggag cactggaacg tgcaggtgtt ccgctccatc gacggcggcg cggcggcggg 
000241 gttcccggag agccccgacg aggccgcggc ggcggggctg gtgtccggca aggaccaggt 
000301 gatcgagcgc agcatccagg acgcgtacat ccacgcgatc cggcgcgccc gcgacttcat 
000361 ctacgtcgag aaccagtact tcctggggag ctcgtacgcg tggcgcggcg gcaagggcgg 
000421 cgtggcgagc gtggagggga tcaacgcgct gcacctggtc ccgagggagc tctccctcaa 
000481 gatcgcgagc aagatcgccg ccggcgagcg gttcgccgtg tacgtggtgg tgccgatgtg 
000541 gccggagggc gtgccggaga gcgactccgt gcaggccatc ctggactggc agcggcgcac 
000601 catggagatg atgtacaggg acgtggacgc cgccatccag gccaagggga tccgcgccga 
000661 ccccaccgac tacctcaact tcttctgcct cggcaaccgc gagcgcctcc ccgtccccgg 
000721 cgggtacagc tacgagccaa cggagcgccc cgaccccgac accgactaca tgagggcgca 
000781 gaacgcccgc cgcttcatga tctacgtcca cgccaagacg atgataggta atacggggta 
000841 ctccctccat tctccttcct tcgtttcaca atgaatctag atagaccgat tcattaacat 
000901 taatattgaa aatattaaaa taacttatat tgtgaaacaa agggagtaaa atataattat 
000961 ttttaaagtt ttacacgatc tttgagataa taatttgata aaaatatttg caatagtaaa 
001021 atgttttaaa taaacaaagt tgtatattat gacagttcgt ttaacgataa atatagtaat 
001081 atcaaattca tataattaat cttttttaat ttttgttatt aatatttaaa atttaaaatg 
001141 ttttacttat tactattctt aaaatgatgt ttatattttg caacggatgg agtaatcaat 
001201 tgacaatctt aatcaatcta agaacatgtc gtcgtgatgc tctgtttctg ttcgatctat 
001261 ttgtagtgga cgacgagtac atcatcgtgg ggtcggcgaa catcaaccag aggtcgatgg 
001321 acggcgggcg ggacacggag atcgcgatgg gcgcgtacca gccgagccac ctggcgtcgg 
001381 tgaaccggcc ggcgaggggc caggtgcacg gcttccgcct cgcgctgtgg cacgagcacc 
001441 tgggcagggc ggctgcggcg tcggccgccg gcgaactcct ccggccgtcg agcctggcga 
001501 gcgtgaggct cgtgaaccag gcggcgcggc gccactggga cgcgttcgcg agaggcgacg 
001561 gcgacggcgc gccgccgacg gaagacctcc cgggccacct gatggcgtac ccggtgcgct 
001621 ggacgggctg cggcggcagc gacggcagcg acggcagcga cggcaagctc gtcgcggcga 
001681 cggagacgtt cccggacacc aaggcgaagg tgctgggtgc caagtctgac gtgctcccgc 
001741 ccatcctcac cacatgagga tgaggaagtc cccatgcgtc gtcatgctgt gcttgctgag 
001801 tgcagaaatg ttcgtttacg tgcaatgcaa ggtggttgtg aacttacaag tgt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ470376 baal16o08 469
more... (Total Hit Count: 9 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ653019 whgc11m07 675
more... (Total Hit Count: 13 )
/rice/oryzabase