cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK105637     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0782500 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 33,331,062 -  33,334,350  ( + ) ;   3,289(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 33,331,062 -  33,331,391 ( + ) ;   330 (bp)
Exon 2 Location 33,331,626 -  33,332,388 ( + ) ;   763 (bp)
Exon 3 Location 33,332,474 -  33,332,575 ( + ) ;   102 (bp)
Exon 4 Location 33,332,653 -  33,332,718 ( + ) ;   66 (bp)
Exon 5 Location 33,332,900 -  33,332,965 ( + ) ;   66 (bp)
Exon 6 Location 33,333,058 -  33,333,345 ( + ) ;   288 (bp)
Exon 7 Location 33,333,426 -  33,333,563 ( + ) ;   138 (bp)
Exon 8 Location 33,334,101 -  33,334,350 ( + ) ;   250 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0782500 Os03t0782500-01 108486 001200E02 15956 LOC_Os03g56950.1 AK105637 41227 AP008209.2 255674134 BAF13379.1 113549936 NC_008396.2 297602023 NM_001058000.1 115455728 NP_001051465.1 115455729
Os03g0782500 Os03t0782500-01 108486 001200E02 15956 LOC_Os03g56950.2 AK105637 41227 AP008209.2 255674134 BAF13379.1 113549936 NC_008396.2 297602023 NM_001058000.1 115455728 NP_001051465.1 115455729
Os03g0782500 Os03t0782500-01 108486 001200E02 15956 LOC_Os03g56950.3 AK105637 41227 AP008209.2 255674134 BAF13379.1 113549936 NC_008396.2 297602023 NM_001058000.1 115455728 NP_001051465.1 115455729
Os03g0782500 Os03t0782500-01 108486 001200E02 15956 LOC_Os03g56950.4 AK105637 41227 AP008209.2 255674134 BAF13379.1 113549936 NC_008396.2 297602023 NM_001058000.1 115455728 NP_001051465.1 115455729
Os03g0782500 Os03t0782500-01 108486 001200E02 15956 LOC_Os03g56950.5 AK105637 41227 AP008209.2 255674134 BAF13379.1 113549936 NC_008396.2 297602023 NM_001058000.1 115455728 NP_001051465.1 115455729
Os03g0782500 Os03t0782500-01 108486 001200E02 15956 LOC_Os03g56950.6 AK105637 41227 AP008209.2 255674134 BAF13379.1 113549936 NC_008396.2 297602023 NM_001058000.1 115455728 NP_001051465.1 115455729
Os03g0782500 Os03t0782500-01 108486 001200E02 15956 LOC_Os03g56950.7 AK105637 41227 AP008209.2 255674134 BAF13379.1 113549936 NC_008396.2 297602023 NM_001058000.1 115455728 NP_001051465.1 115455729


Chromosome: 3 ,  position: 33,331,062 - 33,334,350 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gacgcagccc acgggccttg ttcccttctc accacctcca agtacgcttt gcgggacact 
000061 cgcggcagca agagttcgta tactcgcctc tgctgctgct gcactgccgc gcctaaagct 
000121 gagcaagaag aggagacttt gcagcaagag ttgctactgt ttggtttggt tcaggtgaga 
000181 gaggtcaaca atagctgttg gcgtggctag ttgcttgtgc agaaaaggat tctcttttgg 
000241 ttttgccctt tctgagaagc tgatgatgat gtggtggtgg gctatggttg tgcaggttgg 
000301 ggagctacta gaagaaggag gaatagctag gttgggtagc tcagctttgc tctcctttta 
000361 ttttttattt ttttttctgt ttgttccaag gtttcttgca tcactttgcg gcttatcttg 
000421 ttggttttcc ttctatttta aggtgtaaag tttgtctcct tgtcttggtt gtgcttgctg 
000481 ttcttgtttg tttcaaccaa cttgtgcagt tatacttgat gcttaatgct tctttttttt 
000541 tctttttcta tgtggtttat gcaggttgtg aatttcttgg ggggacacaa gaatcgtggg 
000601 atggatggca atgcgagatc ggcggcgaat cagacgaagc aaatcgtgta gagatttcat 
000661 ctgaaaccca agaacggatt cgtcttgtgt tgttgccgaa tggtagtgac ctgacctgac 
000721 tctgtgtgca tttgctccaa tggcgatttg cagcacggac aacgagctgg tggagctgct 
000781 atggcacaac ggcggcgtcg tggcgcagcc gcaggcggcg caggcgaggg tcgtctcctc 
000841 ctccggccgc ggccagagcg ccagcgtgct caccggcgac gacacggaga ccgccgcgtg 
000901 gttcccggac accctcgacg acgcgctgga gaaggacctc tacacgcagc tctggcgcag 
000961 cgtcaccggc gacgcgttcc cggcggccgc ggcggcgggg ccgagctctc accacgctcc 
001021 gccgccggac ttgccgcccc cggcggcgag gccgccgatg aggagcggca tcgggtcgag 
001081 ctggaccggc gacatctgtt cggccttctg cggcagcaac cacatcccgg agacggcggc 
001141 gcagcgctgc cgggacgccg gcgcggcatt gccgccggag cggccgcgcc ggtcgagcac 
001201 ccacgacggc gccggcacgt cgtcgtcggg cggctccggc agcaacttcg gcgcttccgg 
001261 cttgcccagc gagagcgcca gtgcccacaa gaggaaaggc agagaagatt cagacagtcg 
001321 cagtgaggtg atcttttttt tttcgttggc tgtaacctgc aacttgctat gcttgagatg 
001381 aattcttgaa tgaaactgat gagaaatttc aggatgctga atgcgaggca accgaagaga 
001441 ccaaatcgtc gtcgcggcga tatggatcaa agaggagaac tcgtgcagct gaagttcata 
001501 acctgtcaga gagggtgaga tcatcaaata cagctactga tcttaagaga taaattttta 
001561 gtagtcatcc taaaagatga tactgatgta gagaagaagg gatcggatca acgagaagat 
001621 gcgcgcattg caagaactca tacctcattg caacaaggta agaaacatta ttatatatgc 
001681 atcttttttc tgatcaggtg caagtccatg gactgataca gctatgttgg tgagtggtgg 
001741 catatctgat ctatcctttg ttgatatgat tctctttttt attcaaacct tttgggttta 
001801 ctttactaac tgcagttatc tatatatttt tcaattagac cgacaaggca tctatattag 
001861 atgaagcaat cgagtatctg aagtcactcc aaatgcaagt tcaggtttga actactgttt 
001921 cttgtatctg aacttacatg gtcctacatg aggccaatta ctagcacaga ttgagattgt 
001981 cgaatctgtg cctcagatca tgtggatgac tactgggatg gcaccaatga tgttccctgg 
002041 tgctcaccag ttcatgccac caatggccgt gggcatgaat tctgcgtgca tgcctgcggc 
002101 acaaggccta agtcacatgt caagattgcc atacatgaac cattctatgc caaatcacat 
002161 ccctctaaat tcatctccag ctatgaaccc aatgaatgtt gcaaaccaga tgcagaacat 
002221 tcaactgaga gaggcaagca atcccttcct tcacccagat ggctggcaaa cagtgccacc 
002281 acaggtacaa aaataccata ctgacaaagg gaattttcag gcctctttga ttgttcacct 
002341 agattaggca ttggtcattt gcaggtatca ggaccatatg cttctgggcc tcaagtagca 
002401 cagcaaaacc agataccgaa agcgtcagct agcactgttc tgccaaattc tggggctgaa 
002461 caaccaccaa cctctgatgg aatttagaat gaccagaaac atgtaagcac ttgcaccaat 
002521 cagtacatct gcctatttac ttcaaatgat gttgagataa ctagagctgc gtatcgctac 
002581 ttgtatgtat tactattgtt ttcagccaat atatctgtat tgaacacgat cggcaatttg 
002641 tgccgtcact ttttgtcagc ttaagctttc agagcaacta ggtaacatga ggacctatgg 
002701 acttacccat atcatctgta gtctgtttgt tgagctcgaa atgcatgact agatgcatag 
002761 aatatgaagc catcatcgtc cagcttaaac tttcacagta acctgttagt tcatgcaagc 
002821 taaccagttg ttttcatctg acctgtcata tgatggacta gtcggtggct ccaatctttt 
002881 tggtttttga catcttctag cactgtccat gaaaattaac ggttgtatgt ctatttcagc 
002941 gtcacgctgt tgcatcaaat agaccacatg atagcaaaga gttgctggtg gataacttca 
003001 gaactattat ttatgatctt cattttcttg atattacagg ataaggaatt caatgtaggc 
003061 tttgcacaaa gggtcgtctt tctggagata gctgaaaata ttgacatgat gaacagattg 
003121 catccatatt gctgttatgt atctcaatca gtatctgtct gacataaatg ctacaagtgt 
003181 ctgtaaatgc acatagcatt tccccccttc cctaagatgc taattcccag tgtatgtact 
003241 aataatcctt ataatatgaa gtgccagtgg caatctttgc ccttcttta

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ882841 whthls4e17 722
more... (Total Hit Count: 3 )
/rice/oryzabase