cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK067316     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os01g0100500 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 1
RAP - Location, Length 15,399 -  19,144  ( + ) ;   3,746(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 15,399 -  15,976 ( + ) ;   578 (bp)
Exon 2 Location 16,383 -  16,474 ( + ) ;   92 (bp)
Exon 3 Location 16,558 -  17,258 ( + ) ;   701 (bp)
Exon 4 Location 17,501 -  17,571 ( + ) ;   71 (bp)
Exon 5 Location 17,968 -  18,057 ( + ) ;   90 (bp)
Exon 6 Location 18,142 -  18,321 ( + ) ;   180 (bp)
Exon 7 Location 18,531 -  18,629 ( + ) ;   99 (bp)
Exon 8 Location 18,734 -  19,144 ( + ) ;   411 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os01g0100500 Os01t0100500-01 202830 J013104J17 2631 LOC_Os01g01040.1 AK067316 12943 AP008207.2 255672756 BAF03650.1 113531267 NC_008394.4 297598437 NM_001048271.1 115433955 NP_001041736.1 115433956
Os01g0100500 Os01t0100500-01 202830 J013104J17 2631 LOC_Os01g01040.2 AK067316 12943 AP008207.2 255672756 BAF03650.1 113531267 NC_008394.4 297598437 NM_001048271.1 115433955 NP_001041736.1 115433956
Os01g0100500 Os01t0100500-01 202830 J013104J17 2631 LOC_Os01g01040.3 AK067316 12943 AP008207.2 255672756 BAF03650.1 113531267 NC_008394.4 297598437 NM_001048271.1 115433955 NP_001041736.1 115433956
Os01g0100500 Os01t0100500-01 202830 J013104J17 2631 LOC_Os01g01040.4 AK067316 12943 AP008207.2 255672756 BAF03650.1 113531267 NC_008394.4 297598437 NM_001048271.1 115433955 NP_001041736.1 115433956


Chromosome: 1 ,  position: 15,399 - 19,144 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gcagcaggcg aggagaggca accagaggga gggtaggttg gtttggaagg aaggaaggag 
000061 aagagataaa caagttagga ggagacaagc atccgattcc gaactttgat ggatcccctc 
000121 catatctatc ttcccatcca atccaatctc tgccctcaat tgagattcga gagctaagct 
000181 aagccacgcc aaattaagcc atggcgtgca cggcggcgcg catgttcgcc tccaacgcca 
000241 ccctctgcgc ctgcgagccg ggcttctacc tctccgccgc catcaacggc acctgcctcg 
000301 gcctgcccga cggcggctgg caggtcggct ccgtcggcgc ctcccgcaac cagagcttct 
000361 acttcctcac ccccgtcctc tccctcgacg tcgtccgccg cctcacccag tcccaggccc 
000421 tcctcctcga ggccaccatc gctgccctcc tctcctggct tgccttttgt gccttcgcca 
000481 ggttcaccgg acacgacccc accggcaaca agaggctctt ccgcgcgcgc ttctgggtca 
000541 gccgcctcga ctgcatctac gacaccaccc actgggcggt tagttttctt tttttcccct 
000601 tttttttact aataacatct tgtttcttac aaatttcttt tgccctcgcc gaacttagat 
000661 tttcatcaag gccaaattaa ttgcttttga gtccttctac tcatgtcgaa attgaggatt 
000721 gctttgcttc gcttgttagg aatctcctct cctaaggaac aagtttttgc tttgctacta 
000781 ctttaatttc ttatccatca cactcctttt gccgctcctt cctacttcgg cacattgcac 
000841 tttcttacca gtattagata ttggatatgg atattataca ttatacacta cgaacactcc 
000901 ttatatccaa ggaaatttat tttctgcact aatttctact tttccaagtt gcattgaata 
000961 ttgatgtacc ttgccgtact gtaggatgac cagcaagtac tgaggaaaag aaaaacagag 
001021 ttgggtggta cgtgctcagt agctagcttg atactcttcg ttggattagt cactgtgtaa 
001081 gtgcttaaca aagtctagtg ttggaaggaa tttgttactc actcactaac agggtgtctt 
001141 ctttccttgc ttgttgcagg ctgctgtacc aagccatcca aagacgcaac attgaagtgc 
001201 atcgggtcaa accagccaat gctcctgatt tgttgtcttt tgtcaatgat atcgagttcc 
001261 acataaccac catctctagc atgtcttgct ctcagttggt tgccccttct acaattgcaa 
001321 tgggaacacc tggatctatg gacttcaggc tgctgccttt gtcaacattg ttgacataca 
001381 attgccagaa cacgagccag gggccatctg tttcactcaa gtgcaatggc tgcagaatcc 
001441 cgccaagaga ccactacgta tcctggcaat ttattgacct gccaaggcaa ccagctgccg 
001501 ctgttggctt ccagtttaat ctcactgcga agcaacatgg agatgacaaa catgtgagct 
001561 ctgtcagtgg aactataaac tccgacaatt ttactgatga caagctgaag acattcagag 
001621 ggagagattc caatgtgctc aagattcaat tgtttcctca aacatacatc aatcatcaca 
001681 atttgaagct tctgcaacct ctggttcagg acttcactca aggttctacc ttttcaaatg 
001741 ttagaaactt gaatgcttcc ttgcaaaacc ctatggatgg aataataaat actacactct 
001801 acataagcta tctttccaac tacattgtgg agattagcaa cgaaaatgtg ctaggcccag 
001861 gtgagctttt ctagtgattg ttgataccta cataagtcat ctttccagcc tattgaaaat 
001921 gaagtctctt tacttgtgaa ttgtggtgtt aatgttacta agatttacgc tactaagtac 
001981 caatacaaat atttgaaatc ccggtgcaaa tattttctcc atgatggctt ttttaaattt 
002041 ttgggcttct actaatctga atagtttgta ttactagtat ctaatatgct tattttctgc 
002101 agtcagtata cttgcaagta ttggtggcct ttatgccttc agtgtggcaa tatttctttg 
002161 ccttatggct caagtaagtc atcacaaatc tatccctgtt gtttgtttaa gataaactgc 
002221 cagttttttt tttcactttc gagttttaac tagcctaaca cttgttgacc tctgaatctt 
002281 tgcatcttta tggggttttc tgttccactc agaattacta ataggccatg aaaattttct 
002341 gatatttttt aaatgaattg aattaacata cttgcaattt ccgctcatta tcatggttca 
002401 aggcgtgtgc tctggtgcac atccttcctc gacagccagc tgtcgatgta aaacttttct 
002461 tgtaaccttt tcttcctatc ttaattacat tgaatgacct ccttcggtca ttccggcaaa 
002521 aaagaagatg acttagtatg cagctgtaat tgatgctttg tctttccagt gtgaagctag 
002581 gataaaaaag cttcgagacg aggattccag aatgctaaaa atactgagga aaagacgtgc 
002641 tcaacagaat tgggataagg tgaagaatgt cctgatctaa tgatgaacat tgtacctact 
002701 agactgcatc cctgatcaag catatcattt ttcttcctaa taggtgagga agtttgtcat 
002761 gtatacctgg ggccctagca acttggatcc aagtgataga agtggcaaat ggcctgaaag 
002821 ttcagtgatg gattctctcc atggatcctt ccacaagaaa agaaaaccga ttagacgagc 
002881 aacctcgaat ggtaacaaac ctaagagaaa tcctgctgac gcggtaaagt aactgtcctt 
002941 ttcaactact ctttatggca ctatttatac atttgccatt caatacagta aaatacgttt 
003001 ataccagaaa aagggtaccc tgtgtacatt tttcgatact cttttttttt acttcattct 
003061 ttctctgaca aggttttact tcattccttg ttgaatgatt atcttatttt tcctgtttca 
003121 atgatatcac agggagttat tgacatcgaa agagttgggg aaatgcagga gtcgagtagt 
003181 tctagacagg cttaatggat gaaagctgtg gatgctattg gtcattgaaa tgtgattgct 
003241 cttagtctct gactcatggc tgattctaca caaatgtgct tgtaattttt atccctttca 
003301 atagttccgc ataaagaatt tttttgttgc agcagcatca ttggagcggc ataccgtggc 
003361 ttggctatat ggcaggtcca acacaaccgt actaccagag aggttttctt gtatgtatgt 
003421 tgcaacaaat ggggagaaat gtacggagtt ttaactatta atcagcatgt tggctgctgc 
003481 cgaggtcagg ccagaatcct ctttgatttt catgggactt cgtttcttga gttgtcgaac 
003541 actgtatata ccttcaccag ttaccaccct ccacgtgcaa ttacagtggg gaagaaacag 
003601 aaagatgcct atcatttctc tatatgaagc agatggtggc atttgtattt taatttatta 
003661 catcgtgtca tcgtgtaaat cttcgtgttg gtgtgattcg ccgaccgttt tctagccggc 
003721 tgattatata tgccaaactt atactc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV915364 bags14a23 665
more... (Total Hit Count: 3 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ592615 rwhsd13i06 725
more... (Total Hit Count: 3 )
/rice/oryzabase