cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK105030     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os03g0177400 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 3
RAP - Location, Length 4,093,565 -  4,096,430  ( + ) ;   2,866(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 4,093,565 -  4,093,637 ( + ) ;   73 (bp)
Exon 2 Location 4,094,170 -  4,094,653 ( + ) ;   484 (bp)
Exon 3 Location 4,095,356 -  4,096,430 ( + ) ;   1,075 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
RNA Nucleotide
Accession No
RNA
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
UniProt
Accession No
UniProt Entry
Name
Os03g0177400 Os03t0177400-01 107878 001012F06 4830 LOC_Os03g08010.1 AK105030 22656 AK105030.2 42821645 BAG97075.1 215740919 NC_008396.2 297602023 NM_001055680.1 115451088 NP_001049145.1 115451089 O64937 EF1A_ORYSJ


Chromosome: 3 ,  position: 4,093,565 - 4,096,430 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 cccctctccc atctcacccc gccgccgccg ccgccgcagc ctcctcaagg ctgctcccat 
000061 cctctccttc gaggtcagct gcagatcttc tctcttctcc ttgtttgcgc cggttcatgg 
000121 tagttcgtag ccgtagatct gattcgatgg agcgaggttt gggtgatttg atgcctgggc 
000181 atgttgtttt tgtccattat tagtaacttt ttctgtgtat tcgtctcact gctatgatct 
000241 tagtttgctg ttcgttgacg cgatgattta ttgacttgtc ggtgaatcat ttatgtacgt 
000301 tgaaaattat cggtagaatc ggactattaa cttgatgtgc tgcagaatca tgtacataag 
000361 ttgaaaatca tcggtagaat cagtagaagt atttctatct agaatccgtt cgaatatctc 
000421 tgtttttatg ttcgaataga tggtgttatc gtctatgcct ggttcggttt ggtcgattac 
000481 tgcgcgttag cacttataat tgatgtcgaa gttcatctga tctgtgagct tgcctgtaat 
000541 attatttgga gttagaaatt atgcacgcct gttgtttcta atctttgttt cgttctgttt 
000601 tgcagttagc ttcctcctta ttcaaccatg ggtaaggaga agacgcacat caacattgtg 
000661 gtcattggcc acgtcgactc cggcaagtcg accaccacgg gccatctgat ctacaagctt 
000721 ggaggtatcg acaagcgtgt gattgagagg ttcgagaagg aagccgctga gatgaacaag 
000781 aggtccttca agtacgcgtg ggtgcttgac aagctcaagg ccgagcgtga gagaggtatc 
000841 accatcgata tcgccctgtg gaagttcgag accaccaagt actactgcac ggtcatcgat 
000901 gcccctggtc accgtgactt catcaagaac atgatcacgg gtacctccca ggctgactgt 
000961 gccgtgctca tcattgactc caccactggt ggttttgagg ctggtatctc caaggatggc 
001021 cagacccgtg agcacgctct tcttgctttc actcttggag tgaagcagat gatctgctgc 
001081 tgcaacaagg tatatatctg tagtgtttgg tcttttgtta tgattgatga gcctagcact 
001141 tgtttataca tatttgtgat gctattgcag aaacttttgg ttacataaat gatttactgc 
001201 tatattcagt tggaaattgg aaatgaacat attcgtgatg ctattccaga tattcttgtt 
001261 ttctgttatg attgatgagc aacttctgtg aatattcatg atgctagtcc tgaatactgt 
001321 tgattacatc aatgaagtag cattttcttt tattgattta tccctctgtg ctagtttttc 
001381 tgactgtcta ccttctatgc atctaagact gcaatttacc atgcatctaa ggctgctact 
001441 gttgattgtt gcttttgtta tgactgtctg tctttatgat gcatctaaga ttgcaattgt 
001501 tgttggttgc tttcctgcta ctactagctt tagtaattta ctgctgcaag aaactataca 
001561 tatcttctgt tagatttggt taagttcatt tagatatcgt gctgtatgtt actttatact 
001621 agacttgtat tgatgttgct gtccacctgt atttcattac atattggttg ctattatttc 
001681 attttttgta tcttatatgg tgtttataat atgtttcata ccatttgtag ttagtaatgt 
001741 atttgtatgc tggtgcctgc ccctgatttg ttttcctttg ttctgttaca gatggatgcc 
001801 accactccca agtactccaa ggcccgttac gatgaaatcg tgaaggaagt ctcatcctac 
001861 ctgaagaagg tcggctacaa ccctgacaag attcccttcg ttcccatctc tgggtttgag 
001921 ggtgacaaca tgattgagag gtccaccaac cttgactggt acaagggccc caccttgctt 
001981 gaggctcttg accagatcaa cgagcccaag aggccatcag acaagcccct gcgtcttccc 
002041 cttcaggacg tgtacaagat cggtggtatt ggcaccgtgc ctgtgggtcg tgttgagact 
002101 ggagtcctca agcctggtat ggtggtgacc tttggtccca gcggcctgac cactgaggtc 
002161 aagtcggttg agatgcacca cgaggctctc caggaggctc ttcctggtga caacgtcggg 
002221 ttcaacgtga agaacgttgc ggtgaaggat ctgaagcgtg ggtacgtggc ctccaactcc 
002281 aaggatgacc ctgccaagga ggctgccagc ttcacctccc aggtgatcat catgaaccac 
002341 cctggccaga tcggcaacgg ctacgcccca gtgctggact gccacacctc ccacattgcc 
002401 gtcaagtttg ctgagctggt gaccaagatc gacagacgat ctggtaagga gctggagaag 
002461 gagcccaagt tcctcaagaa cggtgatgct ggtatggtta agatgattcc caccaagccc 
002521 atggttgtgg agaccttctc tgagtaccct cctcttggtc gttttgccgt gcgggacatg 
002581 aggcaaacgg tggctgttgg cgtcatcaag aacgtggaga agaaggaccc aaccggtgcc 
002641 aaggtgacca aggctgccgc caagaagaaa tgagcctcgt tcaagtggtg ctttccatat 
002701 ctgcatttga gatatctagc tcttttagta ctcgttaagt tttgtcgacg gtcatttcag 
002761 ttgttgcatt gaccgttaat atctgctcgc tttgtgcact atgtcagtca tttaaaactc 
002821 tattttctgt tcggtttaaa cttggatgtt aagacttatt attgcc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248954 FLbaf12h23 1676
more... (Total Hit Count: 639 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ778599 whatl26g12 901
more... (Total Hit Count: 3993 )
/rice/oryzabase