cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK104834     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0285800 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 9,895,721 -  9,898,303  ( - );   2,583(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 9,895,721 -  9,896,084 ( - );   364 (bp)
Exon 2 Location 9,896,615 -  9,896,798 ( - );   184 (bp)
Exon 3 Location 9,896,883 -  9,897,215 ( - );   333 (bp)
Exon 4 Location 9,897,347 -  9,897,484 ( - );   138 (bp)
Exon 5 Location 9,897,599 -  9,897,728 ( - );   130 (bp)
Exon 6 Location 9,898,043 -  9,898,303 ( - );   261 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os03g0285800 Os03t0285800-01 104759 001042B07 2652 LOC_Os03g17700.1 AK104834 8825 AK104834.1 32990043 BAG96983.1 215740827 NC_008396.2 297602023 NM_001056305.1 115452338 NP_001049770.1 115452339 Q10N20 MPK5_ORYSJ


Chromosome: 3 ,  position: 9,895,721 - 9,898,303 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ccctcatcgc cttgctgtct ctgcgaatcg agagagagtc agataaggtc gttaattagg 
000061 tttgtcaatt cggctgcttg cggcgagaga agaggaggag ggattaggga tggacggggc 
000121 gccggtggcg gagttcaggc cgacgatgac gcacggcggc cggtacctgc tctacgacat 
000181 cttcgggaac aagttcgagg tgacgaacaa gtaccagccg cccatcatgc ccattggccg 
000241 cggcgcctac gggatcgtct ggtacgcaca cgccgattcc tcttttccct gcctgcccta 
000301 gatttcttgc catgttaatc gatccttcgt cagttccttt tgattgattg atacgcgtcg 
000361 atgagtggtt gagaggatgg agtaattggg accaattact aatcccctgt ttttagagca 
000421 gggatgatta atttgattct gcagctgagc tgagcaggtt tttagttagt tattatcagc 
000481 gtagtggttg actggttggc atgtctattc ggagtacttt ttggtgcttt gtttttctaa 
000541 tttctcttct gaattccgtg tgctggtgcc tacagctccg tgatgaactt tgagacgagg 
000601 gagatggtgg cgataaagaa gatcgccaac gcgttcaaca acgacatgga cgccaagcgc 
000661 acgctccggg agatcaagct cctcaggcac ctcgaccacg agaacgtaag ctcctattag 
000721 gctataacta gtagtggaac tgaagactac gtggttaatt acgcagcggc gtgtacctga 
000781 atttggtaat ctgtcactaa ctgctacaac aacacgcaga tcataggcat cagggatgtg 
000841 atcccgccgc cgatccctca ggcgttcaac gacgtctaca tcgccacgga gctcatggac 
000901 accgacctcc atcacatcat ccgctccaac caagaactgt cagaagagca ctgccaggtg 
000961 agtgaactgt gagcgaatga tttttttttt catatatcga tcaatcacac aatcaatcga 
001021 tagctgcaga aacatcaatt cgatcttcct catgtcacgt atgtatgatt gcggccgtgt 
001081 tgttgcagta tttcctgtac cagatcctgc gggggctcaa gtacatccac tcggcgaacg 
001141 tgatccaccg cgacctgaag ccgagcaacc tgctgctgaa cgccaactgc gacctcaaga 
001201 tctgcgactt cgggctggcg cggccgtcgt cggagagcga catgatgacg gagtacgtgg 
001261 tcacccggtg gtaccgcgcg ccggagctgc tgctcaactc caccgactac tccgccgcca 
001321 tcgacgtctg gtccgtcggc tgcatcttca tggagctcat caaccgccag ccgctcttcc 
001381 ccggcaggga ccacatgcac cagatgcgcc tcatcaccga ggtgagtgaa ttaatcagcg 
001441 tagacactca cacgctgaat tatgctacct gttcttgggt ctcatcgtgt tgggtccatg 
001501 atcaggtgat cgggacgccg acggacgacg agctggggtt catacggaac gaggacgcga 
001561 ggaagtacat gaggcacctg ccgcagtacc cgcgccggac gttcgcgagc atgttcccgc 
001621 gggtgcagcc cgccgcgctc gacctcatcg agaggatgct caccttcaac ccgctgcaga 
001681 gaatcacagg tgcgtgcaga gggctaaccc aactcgtgct tgctgctctg cttctaaact 
001741 actaaaatta gtacccaaaa ttacaagtac taatttacta gctgagtgtg tactgtgtac 
001801 agtaccctgt tcagtatgct actgcatgtg tgctagtata gcactagtat tttctatcgc 
001861 actgcttctt tgactggcgt atatagccgc cggtgtttga cccatcccca actattttta 
001921 tgtttacttg ccgtgaacag tcggtctctt gatctcgtca ctttaaaggg aacccgtctt 
001981 ttagctgtct ttggggctac caacgatttt gcatgttgct caagtgacga taaaagactg 
002041 tgttacttta ctgtgtagta gtgcagaagt agaataggta gcacgtttgc agcctctgtc 
002101 ggttagagtt cagtagacct tagttttgaa acactagaca atagcagagt ggtttagaag 
002161 gatgacagaa gatttgtgct taagaactat atctcactga catcgttctt gacatgcagt 
002221 tgaggaggcg ctcgatcatc cttacctaga gagattgcac gacatcgccg atgagcccat 
002281 ctgcctggag cccttctcct tcgacttcga gcagaaggct ctaaacgagg accaaatgaa 
002341 gcagctgatc ttcaacgaag cgatcgagat gaacccaaac atccggtact agattgaatc 
002401 accatggaaa tgagatcccg tctatacctg ctttgtacat atgatcaaga ttgagagccg 
002461 ggtagactga acattgcatt tgtttgtttg ttgatgttcg aaacccacat tctctgcaag 
002521 ttgtggctgc tttgtatgat atatggtact atgttcgaat aaaagggttt ggaactttgg 
002581 att

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ482023 bah63a17 532
more... (Total Hit Count: 3 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ874870 whthls17i15 762
more... (Total Hit Count: 53 )
/rice/oryzabase