cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK104414     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0122300 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 1,234,474 -  1,243,930  ( - );   9,457(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 1,234,474 -  1,234,945 ( - );   472 (bp)
Exon 2 Location 1,235,971 -  1,236,295 ( - );   325 (bp)
Exon 3 Location 1,243,344 -  1,243,591 ( - );   248 (bp)
Exon 4 Location 1,243,708 -  1,243,930 ( - );   223 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
RNA Nucleotide
Accession No
RNA
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os03g0122300 Os03t0122300-01 103406 006204B12 3702 LOC_Os03g03034.1 AK104414 39671 AK104414.1 32989623 BAG96661.1 215737531 NC_008396.2 297602023 NM_001055334.1 115450396 NP_001048799.1 115450397
Os03g0122300 Os03t0122300-01 103406 006204B12 3702 LOC_Os03g03034.2 AK104414 39671 AK104414.1 32989623 BAG96661.1 215737531 NC_008396.2 297602023 NM_001055334.1 115450396 NP_001048799.1 115450397
Os03g0122300 Os03t0122300-01 103406 006204B12 3702 LOC_Os03g03034.3 AK104414 39671 AK104414.1 32989623 BAG96661.1 215737531 NC_008396.2 297602023 NM_001055334.1 115450396 NP_001048799.1 115450397
Os03g0122300 Os03t0122300-01 103406 006204B12 3702 LOC_Os03g03034.4 AK104414 39671 AK104414.1 32989623 BAG96661.1 215737531 NC_008396.2 297602023 NM_001055334.1 115450396 NP_001048799.1 115450397
Os03g0122300 Os03t0122300-01 103406 006204B12 3702 LOC_Os03g03034.5 AK104414 39671 AK104414.1 32989623 BAG96661.1 215737531 NC_008396.2 297602023 NM_001055334.1 115450396 NP_001048799.1 115450397


Chromosome: 3 ,  position: 1,234,474 - 1,243,930 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gtgccaagtt gtgtgtgtgt accgcggcat ggcggaccag ctcatctcca cggcagacca 
000061 cgacacgctg ccgggcaact acgtgcgccc cgaggcgcag cgcccgcgcc tcgccgacgt 
000121 gctctccgac gcctccatcc ccgtcgtcga cctcgccaac cccgaccgcg ccaagctcgt 
000181 ctcccaggtc ggcgccgcct gccgctccca cggcttcttc caggtataat aaatcactag 
000241 cactactacc tacgttacta catcgtccat ctcgtataag caggtctcac acatgttgga 
000301 tgttgctgtt gcatgcaatc gatcgatgga gttgatcagg tgctcaacca tggggtgcca 
000361 gtggagctga cactgtcggt gctggcggtg gcgcacgact tcttccggct gccggcggag 
000421 gagaaggcca agctctactc cgacgacccg gccaagaaga tccgcctctc caccagcttc 
000481 aacgtccgca aggagaccgt gcacaactgg cgcgactacc tccgcctcca ctgctacccg 
000541 cttcaccgct acctccctga ttggccatcc aacccccctt ccttcaggtt actccacttt 
000601 tcctgccttc tctactactc ctattccaag tactccaaag accatttctt gctcatctca 
000661 aaagactctg caagtcagtc atcactgctc catcttcgct ttggtattga aagaaacaac 
000721 aggacagacg aatagctagc ttggacggct ggtgaaatta ctccatgcag gccgtgtcta 
000781 gttctttaca caattttttt taagtataca aaacaaatta caaattccgc ctgtaaactg 
000841 ttagataaat ttattaagcc taattaatct gtcattaata aatatttaat gtagcatcac 
000901 atcgtcaaat cataacgcaa ttaggctcaa aagattcatc tcgtaattta catgcaaact 
000961 gtgcaattgt ttttttcgtc cacatttaat gctctataca tgtgtccaga catttgatgt 
001021 gatatttttg gcaaaagaaa aattagagat ctaaacacgc ccacaattac aagtggttac 
001081 ctttcccatt cacaactcac aactcatgca cacagatgtt aattccaagt ccccacatgt 
001141 ttcagcgttg cttttttttt ccttagggaa acggagtttc ttaaaataaa atgtttaatc 
001201 cttggaaacc aaagtaaaac gttgccattt tcaagtttgg tccatacccc acggacagaa 
001261 aagaactata gtacttgacc aatctttttc gctccttgcg tgatactgaa cgatgtgttt 
001321 cgaggtggtt tgaaaatgcc aggctaacca ctctgaacag ttcttgggga aaaaaaacca 
001381 ctctgaacct gaacgactct agctgtgggc tgtggctacc atgtgccaga gagacagggc 
001441 tccattctaa acaaattccg ggacaaacag accttttgct ttcatgaaag ataacaaaga 
001501 gttatcacag attcattgta ccctcctctt caatgtttag ttttttttga tggaggaagt 
001561 actcctatcc aatactccaa caaaccacgg ctccacgttt atcatgtttc attactcatt 
001621 agcttgcagt agaatgaaca aaatattgtc tccgttttct tttacttatt gttagacatc 
001681 gataatcttt aatgtacata ttttatcact accttttcta attttatttt cataaaaact 
001741 attaaaaata agtaccatga cggtgatcct tactaattag tattctaata ttggcattat 
001801 caccataggc tgtgtttgtt tgggggttgg gaacctttct cctggcacgt aaaatggagg 
001861 aacggattag cacataatta ataaagcatt agctaaaaac ttgataagtg gattaatatg 
001921 atttttaaaa gaacttttct atattagatt tttttaaaaa aacgtatggt ttagcagttt 
001981 agaaagcttg cacatgaaaa atgagggaat ggaagttgaa aaggtgtatt atagaacaca 
002041 gccttagaat tgattttaac cattgattta tgagttctat tatgagtaga aacaattatt 
002101 atactactgt cacgccccga actagtcccg accggaacta gcccgtgacg ctccaaatta 
002161 acctgttaat cgataccagt cccaggaaac agtgctggta tcacaggaag acagaatatc 
002221 acagcaacaa aggtctcttt attatagagt agaggtacag tcatgttggg ctgcggacag 
002281 atcccaagct cacaactgca ttgcaaaaag ggaaacggaa gccaagactt ggaccaaaca 
002341 acacaggcgc gacttgggaa ttaggccgaa accctaaaac tcatcgtagc cggtttgctc 
002401 ctggaagaac tcctcgtcag cgggatccgc ttcatcttct tcagcaactg ggggggatta 
002461 tttatataga gcaagggtga gtacgggagt actcagcaag ccatgggaaa taagtgttta 
002521 atgcaggctt caaggaaagg ctgttgtttt tgcaattgat tttatttgaa ctcttttctg 
002581 aaaacaacta agtgagtgct tctcaaacga cacggatgag acagtgcgtc tcgtccggtc 
002641 ggagtatgtg caatgtatca gtctttagaa ttgttcaaga ttggcacctg gccatcaact 
002701 ttcaaacggc cacccgggcc aacaactttc aaacggccac ccgggcctag ctgatcccat 
002761 cagctgcaga ttttccaaac atcgattccc cttttcacaa cagcaatttc acaaggcagt 
002821 agtcaaacaa aactacgcta ggaatcacct cacatccgcc catgaccatg ggcacggctg 
002881 ttcgaacagt ttgttaacct ctgcagaggg ggtacacttt acccacacga cattactaac 
002941 ccggatcacc caacccgtgg ggatcagcca cgtcgggaga tctccaagct ttcatgacaa 
003001 ggcatttcca aagccgacac aggtttacca tatgccgacg agaggggtcc cagaccaaca 
003061 acaggttagg tcccagacca tactgtgcca ggaagcccag gggtcctccc cgacaccacc 
003121 ccggcgaatc cacatgtctc tcggcatcaa ggctcccctg ataaactagt tactcagcca 
003181 ggggtgtccc attccaccca tgtggtcgta cttgtcttat gttcggatga aattccaagg 
003241 aaacggtcct taagtgcaag agcgggaaac cgtacacccg gtacgttccc cggtccgtgg 
003301 ttttggaaat tcatttagtt cgcaagcacc gacccaggtg tcgggttttc caagtctttt 
003361 gtaaaaccca agttttaccc aagaagttac tcagatttta agtttgaagg cgaccgtcga 
003421 tactcgcata gagtgcacga atatcgaggc gcaactagat ggttacaagg gaacatggta 
003481 taacaattaa caaaggaagg atcagatgca acaaattagg taggttcgcc aatctgcctt 
003541 gcagacggga caagcaaatt aagtgcgatc ctatcaatgc ataatatttt tttcaagcaa 
003601 cataattaag ttcagatata ggctcaagat gttcaaaggt ggcttgcctt gctcgagatc 
003661 ttgagcttga tcctcgaaat cctcgcactg cgggtcttcg ggctccgaaa ctacacgcaa 
003721 aacgggacaa ctcaacaaac ggcgaaaata aagccctatt aatgacctct aagcgtgcca 
003781 ttagatagat ctcgagattt gaggaatttt ggaagttgaa cggagtcaaa cggatttacg 
003841 gttgggaaga tattgaattt ctaagattat tggatttttg gtctaaagga aaaaggattt 
003901 atttaaatcc tttttgaaaa agaaaaggaa gagggagggg aagtagactt ccctcgggcg 
003961 gctagggcgc ggcccgagag aaaaggggcg gctcggccga gctaaatggg ccggccggcc 
004021 caagaaggcg gcccaaagcg cgcgcgcggg cggggagggg agagagagcc ggtgggccgg 
004081 gtccatcccg cgtggtcccg ggtgggaccc gcttgtcggt gacacggttc accgtgcgga 
004141 acgcgcacgc ggcgcgcgct agggtttggg ggagggacgc ggtgcacgcg cgcggttcgc 
004201 ggaagatgcg gtgcggcggg cccacgcgca gcctcacggc tcaccgcgga ccatgcgcac 
004261 ggggggggaa cggagggagc ggctggccgg gtcagccgat ccggtcgcgg ccgaggtggc 
004321 gccgacatgg cgcctaagtg gcagccacgc gggccggcgg gaggtagacg acgacgccgg 
004381 ccggaacgga cggcggacga cagcggcggg cggcggagcg aaccacggcg atacaggcga 
004441 aagcgagcac accgggtggt tgcacgagac gaggggagac gagccaacgg cttggattcg 
004501 ccggagggag tgcgtcggcg gcggattgcg gcggcggcaa ccggcgggga gggaagaggg 
004561 aaacggcgac gaggtcacga ggggccgatt cccggcggcg agagcatcta cgcggctacg 
004621 ggaatccgtc ccttgcgccg gattaggagg aacgcatcga gggaggccgg cgacgagagg 
004681 cgcttccgag ctcgggcggc gacggcggcg agcacacggc gagcgacggc agcagtcggg 
004741 gcggcgccag ctagctacgg ggaggctact cgtgctacta cccgagtcta agggaagggg 
004801 atggaacgag gagggagaat agggagatgc gctaccgtgc gggacggggc gcagtgacga 
004861 tgggccgacg gcacgggagt gatctctccg gcctcgggcc ggggaagagg aagaagaggg 
004921 cgcgcccgga gtccccttcc gcgtcctcgc tcgtgccggc tcctccgaca cgcgcgacga 
004981 caaacggcga cggcgaacag agcacgggag gcggcgacaa tggagtggag gcgatgggac 
005041 aacgagagga gaagagaggg agggcgcctg ggctttatag gatggcaatg acggtttggg 
005101 agaggggaac cgactttgga cggtcaagcc agcgagctgg cgctccggct agcggccaaa 
005161 tcggcgacag ggcggaggga ggatgacgcc ggcgggagga aaaaagggaa aaggagggag 
005221 agaaaggggg cttgcccctt gcctctttgg gaaaaggagg agggagcggg ggcgacgcgg 
005281 cagagggagg aggggctctg cctccgtccc ttggaagcta gcgcgcggag tggcggggtc 
005341 gggttgatga cgacggcgat gacggcgggg cggtttggag cggagcggcg acacggacgg 
005401 caggcgcgga caggcgcggc agaggctgac ggcagcggcg accaggcggt cggccaccac 
005461 ggcacgcgcg cgcgggaagc aacgggcggc gcggcgattt gagcggcgcg gctcgggcac 
005521 gcgtgctgac tcgcggcgca gacggcgcag gcgcggcacg ggcggcgacc gcacgggcgc 
005581 gtgcatgcga acaacggcgc gcgggaagca gcagcgaggg agcggagagg gagggctcgg 
005641 ctcggcgcgg ctcatgcgca cgcgcgcgcg gcgcgcgggc agagcggaga agagggaggg 
005701 agagagagag agcgagagag agagatagcc ggggagggag gggaagatgg gccgagagag 
005761 attcggccca tcgaacccga gggaggaaaa ataaactttt gcggagggat cgatttggga 
005821 aggtttggat tcgggattga actcgacgat agatcgggga tttgagatct gagatggcac 
005881 ggacactagg caacaagcaa agaaacagat ttcgcaaata gagtttttaa gagatagttt 
005941 tcccgctagg cgccacgacg gaacgggcgc tacaactact agtagttggt tggtagtaga 
006001 aatagatatg atctattgga ttagaataag atatacgatt tagattggtt ctactatcgg 
006061 taaaaaggat taaaaatata attatataaa agagatttcc atgccaaatc taccaacacc 
006121 attttctcat gttaaatttt agtatttttg catgaattaa tcatttaaga ttcaaggttt 
006181 gactgcacgc attctataat gctatttatt tgagttagtg caataattga agtagcgggc 
006241 ttcaaaaatt gccacatcaa atttgtgatt aggtggagag atgatagaag atgagaataa 
006301 tagcggtgtt atagatttgt agccagctat agcatgagtt ataagacatc gtgtgtagta 
006361 aatatttatg tgtaactatt atatagatag actattagat tagctgtaga tgatgtgcca 
006421 atttttgaag ctaataatag atggctatac tattatactt gctatttgag atcggaggta 
006481 gtaaacaact actttctcag ttttaaatta tgagcatctc taggtttctt agtggagatt 
006541 aaagttgaga agaagagact ctggcattaa aaatataatt atatgaaagt gattttcatg 
006601 gcaaataaga tttatgggta ggttaagcag agatgagaag agaggagata gagaagaaaa 
006661 gtgtgttaca tatgtgtagc taacagtagc acgggctata agacggtgtg tgtagtatat 
006721 atttgtgtgt aagtattgta tggatagagt attagattag ctgtagatga tgtgccactt 
006781 tttgaaacta ataattggct atattattac acttgttgtt tgatattgga gacagtagac 
006841 aattgttctc tccattttaa aatataagga tttctagatt gtatagcaaa gattaaagtt 
006901 gaggaggaaa cactttggtg ccccttgtgt aacaagaaac aacttgaggc aggaggtagt 
006961 tagagcctct tagaggtaag atgagattta aaataaatta ttgatgggat aagtagtatt 
007021 acaaatcatt tttatatatt gtaacaacat gaactagtga ggttgacctg tcatgctagc 
007081 aatgcctttt atgtctctgc actcatatac tgtaagaggc aattttagca cagacatcga 
007141 tcgaggaaac agaaagaagg ttggagctac tagtaagaca atgcaatgag aaccacattt 
007201 ttcccctact gaaaaagtcg catcgcatca gtcatgtaca caatcacatg aagatcccaa 
007261 catcagaaac gatgaagtgg tcacgtgcat ccatgcctag tgctgggatc atttcacctg 
007321 ctaagaatcc actagtgtcg gtttcgtagg acctcccttc tcatcagtgc ttggatgggg 
007381 atttcaatgg gagctcattg gagctcgttg gtgtgatggt ggatgacttt atttcaaatc 
007441 ctgatataca taaatatggt tgtgcacttg tgcgcattct tcgctcaggc cgaaagttat 
007501 cctttgttta tccaaaaaca aggtcgaact taggaccagt aggacaaaag atcaagggaa 
007561 ttaatcacgc attatctcct aagttaatcc ttatattatt aaccataaga tgaatttact 
007621 ttgacgatgg tgcagggaga tcataagcac atactgcaaa gaagttcggg agctcggatt 
007681 cagactgtac ggagcgatat ccgagagcct gggcttggaa caggactaca tcaagaaggt 
007741 tcttggtgag caggagcagc atatggcggt gaacttctac cccaagtgcc cggagccaga 
007801 gctgacgttc ggactgccgg cgcacaccga cccgaacgcc ctcaccatcc tcctcatgga 
007861 ccagcaggtg gccggcctgc aagttctcaa ggaaggcagg tggatcgccg tgaatccaca 
007921 gcccaacgcg ctggtgatca acattggtga tcagctacag gtgatgcata tatcagtttc 
007981 ttttatcaga gtatataatg gactaggtta ggtgttcaga taacattgct gaaaatctta 
008041 gtgcttgttt agttctcaac tttttcttca aacttccaac ttttccatca catcaaaact 
008101 ttcatacaca cataaacttt taactttttt tcttcaaact tccaatttta gtcaaatttc 
008161 taattttagc gtggaactaa acacagcctt aaccatggca attgaagctg ttgtgtgttc 
008221 aggtatagct tgttggtaaa cgatcaggct aggtggcaga caatgctagt gcggcagaat 
008281 atagttgggt cacctaggac aaacacttct tgttgcagaa aaaaaaaaga cgagctgttg 
008341 accaacatta taataactgt gataatagaa aaagaccaat aaggacccct ttttgatttg 
008401 caggacagga aaaacacaag aatagaaaaa ccgcaagaat tagggtagta acacttctca 
008461 aatcttacat gaatataaaa aacacaggaa aaacaatatg agtcttttga tagtgttatg 
008521 ggaaaaacaa aagaaaatta cttcattgct atttttccta agaaatatga aacaagtaat 
008581 acaatcttat agaaagtttc ctttcttttc tataatcaaa gggacatgta ggaaaaaatt 
008641 cataggaatt taaattatat gaaaatactt ggccagattc tatcattttt atgaatcgaa 
008701 gaggccctaa acagccagat ataatggatt gagtatagta ctaaaagata tcgataccgt 
008761 gatacgtcgc acacagagat ttttctctag gagtagataa atgaagattc ttctatcgga 
008821 tgccaattgc catggtttat actttgcaaa gagtagttaa atatttgcag gaaatctgaa 
008881 ctgcaaagca ctgaactgta ttttttttat tcagtaaata ttttccaagt gttggttctg 
008941 ctctgcagca gaatttgtaa cctctgtaac ttccatatat tgcaggcgct aagcaacgga 
009001 agatacaaga gcgtgtggca ccgtgctgtc gtcaactctg acaaagcgag gatgtccgtc 
009061 gcatcgttcc tgtgcccctg caacgacgtg ctcatcggcc cagctcagaa gctcatcacc 
009121 gatggctccc cggccgtcta ccggaactac acctacgacg agtactacaa gaagttctgg 
009181 agcagaaacc tcgaccaaga acactgcttg gagctcttca gaacaacacc tacagacaca 
009241 tcttgaattc ttgatctagt cgagaactgg tttgtagtac tcggttgtag gtgtaggtgg 
009301 tgtttgggag agggggtggt gtttgggaga gagcccgact tattgttttg tgagaggatc 
009361 tcccaaacac ccccgtagtt tctcggttga agttgtttgt agtactcggt tgtaggtgta 
009421 ctggaacgag ccgttggaat gagtaatcaa tcaaatc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY859014 rbaet113a07 463
more... (Total Hit Count: 2 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ879427 whthls30e06 694
more... (Total Hit Count: 29 )
/rice/oryzabase