cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK103809     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0681400 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 27,922,471 -  27,927,412  ( - );   4,942(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 27,922,471 -  27,922,800 ( - );   330 (bp)
Exon 2 Location 27,922,886 -  27,922,974 ( - );   89 (bp)
Exon 3 Location 27,926,472 -  27,926,535 ( - );   64 (bp)
Exon 4 Location 27,926,648 -  27,926,750 ( - );   103 (bp)
Exon 5 Location 27,927,056 -  27,927,159 ( - );   104 (bp)
Exon 6 Location 27,927,310 -  27,927,412 ( - );   103 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os03g0681400 Os03t0681400-01 J033147A12 214664 J033147A12 15518 LOC_Os03g47770.1 AK103809 38646 AP008209.2 255674134 BAF12820.1 113549377 NC_008396.2 297602023 NM_001057441.1 115454610 NP_001050906.1 115454611


Chromosome: 3 ,  position: 27,922,471 - 27,927,412 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gcacaccttt ccccccctct ctccctccct cctccgccat ccctagcagc cgccccgcac 
000061 ccgcgcccgc accatgacga gctcctcctc cccttcccgc aaggtaccaa accctaaccc 
000121 taaccccctc ctctctaccc tcatcccctc cggatcccat ctcccctccg ccccgattcg 
000181 ccgtaatttg ttttgggggt ttttttctct ctctctctga gctgtttgtg tgtgtgtatg 
000241 tgtgttcgtg caggtgctga gcaagatcgc gtgcaaccgg ctgcagaagg agctcgcgga 
000301 gtggcaggtc aaccctccct ccggcttcaa gcacaaggtc accgacaatc tccagaggtg 
000361 accccccccc tcccccgcga ccactccaaa cccacgcggt ttttgtcctt gccgctttcg 
000421 cgtttcgtct ctttcccttt cgattcagat gaaatcgcaa acccttttcg gcgtcctgat 
000481 tgacccagga tctccttttt ttctatgagg gttttggccg cgtagtcgtg aaatattcag 
000541 tcgttcatgt tcttgtatga tttatttatt ttcaactttg atactttctt gtgatttttt 
000601 atccatgtga aaagcatgaa aaataatata tcatgatatg gattattccg aaataaaaaa 
000661 aggtgggtca tcgaggtcgc gggggctgcg ggcacgctct atgccggaga gacataccaa 
000721 ttgcaggtgg acttccctga gcattacccc atggaggctc cccaggtggg atttcttgcc 
000781 ttctctttat actatttatt tatactgtgt ttagtttggg tatactgcat gcactggaat 
000841 ccaacgcttt gggtttgatc gacttgtttt tctgtaggtc atatttcttc atccagcgcc 
000901 aatgcatccg cacatttaca gcaatgggca tatctgttta ggtaaaatga ttgtatgctc 
000961 ctattgatgc ataaataatt gttgttttcg ttcttgatgc ttttgcccac tccattaatt 
001021 ctcttgggtg tacagcattt ttactggacc tgttttacag ttttagcatg tccacgaaat 
001081 atgcctttct gtcttgctaa tgaaagctgc catcttcaat ggcaagcata atacttagga 
001141 gtttaaagta gtaaataact agggtagtaa ctgtatgata agttttaaac acatttagct 
001201 atcccagctg taccttttaa ctttatatat gctgggaagt gtacaaactt agaaagtaac 
001261 acttgaagtc cttagatatg ggtgtatggg catagaggaa gtgactagaa tataggtgga 
001321 ttaaccttat ccacttctat ttgtctaggg taatcctgtg ttagataatg ttgaccaaga 
001381 tcaacacttg tctcttccac caccacatgt tgtttttagc acctttgcat atcctcttgt 
001441 cgttcatgat caagaactcc caactttttg acacatctgg gcaattctgc tattatgttc 
001501 ctgattgaca tttaacaatt tgactattgg ctgtgctgtg atgtctggtc tgttcatgga 
001561 ggttctggat gtagttaagc tgaaattcta gcctatgtgg ttatctagtt aaatttatcc 
001621 ttaagaggct gcacccctta tttagtggaa gttctcttgt aagttacaac acacaagtta 
001681 attgatgtgt actatgtact ttatgtaatt ccttgatgca ttgaaatgga tggttacaaa 
001741 ctttccggtg gattggtaaa atagtttatg atagagcggt gttgagatga accattcaat 
001801 aaattctccc aacgtagcaa acctgtacaa taagatgtct tgtactcaac aatttttaca 
001861 agatgttatg aaacacataa tacatgcctg ccagatacct caagttatta gatgttattg 
001921 ttgtgcatat attctaatgg tgggatattc caaaattttc ttgtattaat gggacaatac 
001981 tgtacattgt catcggatat tgtcctgcct gctgtgaaat gttcaatcca gtgtagattg 
002041 ctaagtgtac agaatctaac tagtttgtca tccttttcaa gaaaaatggt tgcccatgat 
002101 ataagcattc ccactatcag cttacattaa tattggcaag cacaagtcct ctgcagtatt 
002161 acttctctag ttaaagcaat gcctttttgc agatgtatat gcagcagatg caccctagaa 
002221 aattttcaaa tcttgagcat cctgaccatg gttcaagaag gcgctagttg ggtgactggg 
002281 gggcgcctcg gtcaggccag atagtcaaat ccaagaaatt agcaagcata ttgcataaaa 
002341 cttggacttc ataacactaa aatagcaaca gaacaccacc cacgttagtt cagccgccta 
002401 atgcaccatc taatacttaa tcgtggcggc tacctagtgc atagagccaa cttttagaaa 
002461 actgatcttg actcccaagt tgctcatatt taacggctta cccatagtat aaaaatccac 
002521 cagacggcaa gccggcacaa ctcgtggttc acagcaaccc ccactgccac cccccctccc 
002581 ccccagcaca cacacacaca cactgcctgg tcccactgtt ggactgctga accatggctc 
002641 actaaaatcg ataccgatgt atattctcca tgtaacacaa gtgatttgct acctggatgg 
002701 ttgaagggca gcagctgcag gttgctcacc agtgttctat cctctgcctc cttttttttc 
002761 tcataactgg gcctaacttg ccattcactg atgagccgtg cggtttatga tccgtttcca 
002821 ttggttcacc agttcttaga aaaaccatct ggttttcctg gtttactctc ctgtccaata 
002881 gcagaagcga tccttcacac aaaccaaacc ggaagggatg ctggttaagt atgatggtgc 
002941 accttcctct tttttaactg aattattgtc ttttcaactt tgcaaacatt cagttccttt 
003001 cctaatgcag tgatgccact ttttggaatg attgttttgc tactttattt gtctatcact 
003061 ccacctgtct agttcagtac aaaatgaaat ttggtgaatt gagttgtgca tttgcattcc 
003121 cctttacttt ctaacattaa tataaccatg ttttgacttt taatgcaata catgaccaga 
003181 ggaatgcctc cttttatgca aagagcatgt gttttgtagg tgaaaggtat ctattacacc 
003241 atacaaatga atctagcatg gctcaatgca tttaattccc ttactatgtg tgctggataa 
003301 ccttttttcc cggtttgatg gtgtggcttg tttgtttttt cctgtcaact agcgacatac 
003361 ccatgctttg ctattggcag aagaaacaaa atattattgt atgtcatagt aaaacatatt 
003421 ttatcaaata tcttagcatc acttgtttgc ttattttatt atctgatact agaaaaaatg 
003481 cccgtgcgtt gcaatcggtg aaggctattt taattttatt attgttatac ggtttagcta 
003541 aggtgaaatt cactacggga atttgcttgg atatatgtta gaaaatcatg agctgcaatt 
003601 aggagtacga ctcatgtctc aagttagtat gcgaattttt tttaaagaga tttcttatat 
003661 gactcctgta tttccaaaag cgaataaact taaaaaaacc aactcaaaca cagatctgta 
003721 tttccaaaag caaacaaact taaaaaccga ctcaaacacg gatgacgtac gaaagtaccg 
003781 gcaaaaacat cttcaatttt tataatagtg gagatttact tgattggacc aaatattgga 
003841 ctattccata atattagaaa atatcatgga acaatttgta aaaactgcta aagcaatagc 
003901 ggggtggcag attcattgcc accaccactt gaggctttta aataagttta tatattggtt 
003961 aattgccacg ttaatttcta ggttattttt tagggcaaag cagggctaaa tttattactt 
004021 ggagaatatg atggatatgc ttccgagctt tttgctggcc tatgttatca agaattcaag 
004081 agatgtcttt ctaaaataaa ggaccgaaac ctgcgatttg gtgacacaaa ataccttgca 
004141 tgcctttttt tttttttgta attctggacc ctaaaaatgc taaattttgc ccccttttta 
004201 ttttttttct ttgtacacat tgtttggaaa gtctactcac gattgccttt ataatttgaa 
004261 gttttgaacc taaccagcga gaaaatggaa atctaatgga ctacttgggt tgccttagtg 
004321 gttgtatttt tgcttggatg ggttctggaa tttttgtcca cctaccatct ttgtttaaca 
004381 attaacatgt caatttgacc gcagatatat tgtttactgt tgtttcactt gtctgcagat 
004441 atattgtatg actcgtggtc accggcgatg accgttagtt ctgtttgtat cagtatcttg 
004501 tccatgttgt caagctcacc agcaaaggtt atagagcttc actgtgtcct ctcctgttta 
004561 aatggagatc atgcatctga ccatattata tgtttattat atgttggtgc agcaacgtcc 
004621 tgccgacaat gatcgctatg tcaggaactg ccgcaatggg aggtcgccga aggagaccag 
004681 gtggtggttt catgatgaca aagtgtgatt ggttccaact tccggttggc ttctcctcag 
004741 caaccctttt acccgccacc ctacctttac atggcgtcct ccatgggaga tgatttaggc 
004801 atatttttaa gcgatctatt tgaccgcaaa ttaacatgcc tttgtggttt gtaaatgaat 
004861 gtgaacctgt atcgaatcct agacttatta attactatac cttggatata tagaataatt 
004921 acatgtgtat cttgcttatt gc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK252722 FLbaf166f09 835
more... (Total Hit Count: 6 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ706860 whv16n7p10 748
more... (Total Hit Count: 102 )
/rice/oryzabase