cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK103648     Link to RAP-DB ( IRGSP 1.0 / Build5 )
RAP ID Os03g0790600 ( IRGSP 1.0 / Build5 )
RAP - Chromosome No. 3
RAP - Location, Length 33,758,166 -  33,765,029  ( + ) ;   6,864(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 33,758,166 -  33,758,574 ( + ) ;   409 (bp)
Exon 2 Location 33,759,474 -  33,759,716 ( + ) ;   243 (bp)
Exon 3 Location 33,760,002 -  33,760,154 ( + ) ;   153 (bp)
Exon 4 Location 33,760,300 -  33,760,368 ( + ) ;   69 (bp)
Exon 5 Location 33,762,606 -  33,762,693 ( + ) ;   88 (bp)
Exon 6 Location 33,763,072 -  33,763,155 ( + ) ;   84 (bp)
Exon 7 Location 33,763,419 -  33,763,507 ( + ) ;   89 (bp)
Exon 8 Location 33,763,858 -  33,763,971 ( + ) ;   114 (bp)
Exon 9 Location 33,764,438 -  33,764,572 ( + ) ;   135 (bp)
Exon 10 Location 33,764,772 -  33,765,029 ( + ) ;   258 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
Tigr ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os03g0790600 Os03t0790600-01 214502 J033135C17 12006 LOC_Os03g57660.1 AK103648 42885 AP008209.2 255674134 BAF13430.2 255674953 NC_008396.2 297602023 NM_001058051.1 115455830 NP_001051516.2 297601794
Os03g0790600 Os03t0790600-01 214502 J033135C17 12006 LOC_Os03g57660.2 AK103648 42885 AP008209.2 255674134 BAF13430.2 255674953 NC_008396.2 297602023 NM_001058051.1 115455830 NP_001051516.2 297601794
Os03g0790600 Os03t0790600-01 214502 J033135C17 12006 LOC_Os03g57660.3 AK103648 42885 AP008209.2 255674134 BAF13430.2 255674953 NC_008396.2 297602023 NM_001058051.1 115455830 NP_001051516.2 297601794
Os03g0790600 Os03t0790600-01 214502 J033135C17 12006 LOC_Os03g57660.4 AK103648 42885 AP008209.2 255674134 BAF13430.2 255674953 NC_008396.2 297602023 NM_001058051.1 115455830 NP_001051516.2 297601794
Os03g0790600 Os03t0790600-01 214502 J033135C17 12006 LOC_Os03g57670.1 AK103648 42885 AP008209.2 255674134 BAF13430.2 255674953 NC_008396.2 297602023 NM_001058051.1 115455830 NP_001051516.2 297601794


Chromosome: 3 ,  position: 33,758,166 - 33,765,029 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 gctcggggtg agcgtccgcg gccgcgtcgc ggtggcgatc cgaggaggag gctaccgcgg 
000061 cggggtggtg cgccgcgccg cggaaaggag cgccgctgcc gttctcattg ccggccacgc 
000121 ggacggcggg gtcgagaggg gcacggtaat cctcggaggc cccggcgacc cgctcacccc 
000181 cgggtgggcc gccacggccg gggcggagcg cctggatttc gaccacgagg atgttaagcg 
000241 gcggtttccg gccatcccat ctatgccggt gtcgggcaag acggcttcgg ctatcatacg 
000301 gacactaggt ggcccggctt tgccggcgga ttggcagacc ggagttggac tcccggtgga 
000361 tgtcggcggc gttggacctg gtcccactct ggtcaacttc acatatcagg tataaaatac 
000421 aaatcgcctg gaggattgtc tatctatgat tactcgctta gagacaagga cgctgggtac 
000481 gtttgcaggg aaacaggaat caaagccatg gaccgctcct ttgacctatc ttgactgggt 
000541 tttccagtga taggctgttg ccattttgtt ttcaacttaa gagagacgtc tgtgctgaat 
000601 ggggaaagag tcatcgtagt agtccatgtt gtaaactgcc gtgttgagat tctggataag 
000661 ctcctaaatt gtttgagctg taaaagatgt cactacattt gcagtttgat taggaagcac 
000721 agtaaccatt tccttgtccg cttgactatt ttggtttcag tggacagtgg tcctagcacc 
000781 tgttgtttta ttagcccttt tttatatctg tggtagtgtg tacaaaacta caaatagcat 
000841 tatgcttgat gttgagcgta ttgaccagcc tttgctcctt tgtagtgcat attggttaaa 
000901 cttagttaga ttattattgt tacagattta tacagaatga gaaatattat tgtgggcata 
000961 ctgagctatg agcaccaaat cattgagcac ttgtgacgta agttttgcaa gtggtatgct 
001021 tttatggctc cctttgttat gttgctgtag gcctatttgt cattattctg tgttgtttct 
001081 atatgctgga tctgttgtca tgtctctcaa ttggatgagc tatatatatt ggacaaataa 
001141 agcattgcat aatagctgtc cgtgcttgtc ctccaggcaa gttagtgttt caggatgcat 
001201 cttttctttt gcacagtttt gcatatttgt ataactggca gatgagacta tgttttagag 
001261 ttaagtacaa tcaagaccat aatggttttc tcttatatct tatttaagga ggacaggaag 
001321 atgggcatga tacaggatat ttttgctatt attaaagggt acgaagaacc tgatcgttac 
001381 gttatccttg gtaaccaccg agatgcatgg acctatggag cagttgaccc taacagcggg 
001441 acatctgcgc ttcttgatat tgctcggcgt cttggaataa tgctgcagtc aggctggaca 
001501 ccacggagga ccatcattct ttgtagttgg gatgccgaag agtttggaat ggtgagttca 
001561 tattaaagaa aattgagaat atgttgctga acaccatgtg aaaaaggaaa ccatgcagat 
001621 gcccccacac cctaacattt tcaaagtaac atatatggca tttgcatttt atgaaaggaa 
001681 ccccacaaaa aaatcatata tagttggcat gttcgtagct atccttttga atgaactttt 
001741 ctggttgatt tgattcatct gtcacagttc tcaaagatct catttatttg tgtcccgttt 
001801 atttcttttc tacattttga aggttctttt ttccagatcg gatcaactga atgggtcgaa 
001861 gagaacctcg aagatctgca atcgaaagct gtagcttact taaatgttga ttgtgcggtg 
001921 caaggaattg ggctttttgc tggttctacc ccccagttgg acaacctctt ggtcgatgtt 
001981 acaagacagg tagagattaa tgtgtttcca ttgcattttt ctatgagctt gggttttcat 
002041 ttagaaacct cagtccactc agctatttat accaaatttt agaattgttc tgaagtgaag 
002101 ttatgtttat tcattcagaa ctttttgctt ctaggtaaaa gatccagatg ttgaaggaaa 
002161 aacagtccat gatacatgga ataaaatgac cggaggcatc aatgtaagat ctcgaaggtt 
002221 taaacatgct tttctatata catattgaga tgtactcaat ccaggttgtc actagctgtt 
002281 ctaaactggt ttaaagtcaa acatcacttt tataatagcc atctagtggt cacactttgt 
002341 acactacagg gttggtaact ttgaattatc tatgccgaca actaatcttc tgcatagtga 
002401 gttactgagt tggttgttct tttgttttga gtttttagta gggtaaggta tgcagttcta 
002461 cattgggtgc agttgctcca agtgcagggg gcaggcccat atagatctca gttcctagag 
002521 tgagacatcc cccacacaag atatacttac gagatgtgct aatctggtgt cgtcgaatct 
002581 ttgttgtagt cgacagtcta catgacaact atacaaaaat gaaagtgaaa attactactt 
002641 gctatgcact gatcttatac ttctgacgtg agcaattcct tctttctttt tttcaaatcc 
002701 ttacaaaaca ggtaatataa atacatgaaa ttgttattta gataaagata tatcgatatt 
002761 ggtttagtag aacgcatcag tggcacaaag aacgaaccaa aaataatagt aataaaagat 
002821 aacgataact tcatgtttca taacttcacc ttatataggc atctagccct caccaccttc 
002881 atgggctaac gcaggcccct ggctgtggcc caggtggcct ggggcctgaa agtgaaaacc 
002941 tattcataga aactagccaa atacaggctg ggccaacccg gaattaagcc cctgaccacc 
003001 ttaaagctag ttgggggtgg cacctccaag ataaccctct aattattagg actatcacat 
003061 agtatgaatt aactaattac ttggtatctg gctggttgat ctttcaaaat tgtttcgctg 
003121 aaattctttg tcagaatttt tgaaaaacct tctgaatgaa atatggtcaa caatttatcc 
003181 atcagcaatg attagttggc atgaacagct aattttgtaa catctggaat gactcccact 
003241 catttttgtg tcaagcccac gtcataatta ctccaagcac tccaaatgat ggcttccata 
003301 aataccatgg aaagctccaa accttacaaa atgtcatttg ctttccacga caatcagatt 
003361 taccatttaa gggcgatacc tttatgtaga aaaaatttcc gttctgttga agttgacatg 
003421 gctgtaccag ttgaaggtgc atgtgaaagt cagctgtatc ggttgcagag aataatcgct 
003481 actcggttgt ctccatcaag ttgagcatgc aaggtctgga tcccacatgc aatcttagtg 
003541 ctagtcaaaa ttcacacttt ctacatagaa ttgtggaata agataataac caaattgtgt 
003601 cgatggatat tccagttcca ataaattagg ctacaaacta cctgtacctg gttatacatt 
003661 ttttgtgttg catactgtta catattaaga atatgcagtc cgggtttatc actggactaa 
003721 ctttggtcaa ggagcatcaa ggtgtgatgc atcacccagt tgctcactca acaactgtct 
003781 caagtcccac tgtccctttg aaactcttgt ttccgaccat gcaattagat gccttggccc 
003841 attgcttctc aaggcctcaa ccacatacta agtgctatac aacttggtcc ctaccatgtt 
003901 aacccagcca ggacgtctga aataattgtc ctaactggcg cggggaaaac ctcacctata 
003961 tcaggcacat gtatgtccca ctttcccatg cctatttacc agcgggtgca caaatacaat 
004021 gtagattgat gaggtaccta tgatgtgtat gattaaaatc atgtgtatgt gtgaagtgta 
004081 gaactgtaaa ttaggcaact aatttccaca gccagttcac gtgtccatga cactccatct 
004141 gtcttgttcc ctgtcttcaa tgaacaaact gcttattgtg gtcctccttg ctgtagtacc 
004201 ttccatcacc tcacttgtgt gcctgaaggg tgagtttctg gcgcaggagg ccaagcattc 
004261 tgccagacgc ccgaggagcc attccatcta cttcactctg attttgtcta aactttttta 
004321 ttgtgctgta aattaattac tatcgcttgc taccgtaagt gaaaaaaaat tctggttatg 
004381 atcttttgag cgtctaactc atatatatgt tctgattatt tactgacaat gaattcgcag 
004441 atagaaagac ttgccagaac tgattctgac tttgctccat ttctacatca tgctgggatc 
004501 ccctgtatgg atttatacta tggaaaaggt attttaagca tgcaatcacg tctttctgtt 
004561 tattattgtt aaattaactt ataactttcc ttttccttct ccaatatagc atgtaatata 
004621 cggagaaaaa gacttgcttt ttttgctcaa aaaataaact gtttttttct caaaagagag 
004681 aacagtatat gttttctaag cagaggacat taatgcaacc ccatttttta ggatcgttac 
004741 tgcttgctca ttttttaaaa tattttgttg agctatgtga tttaattttg tacatctctc 
004801 aatcgtttcc tggttccaag ataaagttag aagagacaaa atatttcccc atcaccccac 
004861 tttctagaga gaatgcagga catcatctaa ctggtctaat acgcagaatt tcctggatat 
004921 catacggctc ttgactcgta tcattggatg gaaaagcatg gtgatccact gtttcttcgt 
004981 cacgtggcta gtaagtagca gtaatgatct tttaaaatga ttctgaaagg gagaaaatgt 
005041 gcaatacctt acaaactaca attttgcttg ttcaaattac tgttaacttg aatgcactgg 
005101 tacaagacca gtcaattatt ataaaaattc tatggactat cccatataga actagacata 
005161 aggtcgcagc tgagtttggt atttttgtgc tttaaaatat gttgtacaca tctcttataa 
005221 tactcatcat gctcatttac tttggctcaa cagttgtgga gatttgggga ctactggccc 
005281 ttcgattagc agatgaccct gtgctgcctt ttgattatca aacatacgct tcccagttgc 
005341 aggtacatcg attctttcag aattagcaca agcatttaac attttcatat gattggcatt 
005401 tatcatcctg aaggactgta cgtgtatgtt tatgtagcat attcaatttt tgcttatgca 
005461 atgggagctt gacccaaaaa cagggttttg ctcaaaacaa cattgtaatt gacaattttg 
005521 aatgcacata tgctcaatct agttgaactg aactttagaa cacaaatata agtcacgcat 
005581 gatgaccaac ttcatgggtt catagatcat attagagtag gggtatattt ccttttccca 
005641 cagcatcatg gtctcatctt ctgatgtaca ttttgaactt gcaatgtcgc aggagcatgc 
005701 aaatgcattc tctagtatga tggaaaatag caaatgggtt catttgctga atagatccat 
005761 tgaagatctt tctgatgcag gcttagaatt tctgaaagag gcaaaggtat gttcaagaat 
005821 ctttttttct tttgctttat attctgtttt gtctttctgt ttccatgtaa ttaggtagtc 
005881 tgtagtccat tatagttgcg gttggctgaa gatattttct tctttagctc tttcactctg 
005941 cacactgcat atcacttctg tatgtacaac cagtttgaaa cggcagtatg tatatttgga 
006001 tatccaattt tatttagaca tttgcctttt gcagttttgc tgcacataca ggcaataact 
006061 ttaatttctt agaacttagt aatccttttg gtgcctgaca tcacattatt gatgctttct 
006121 cttaaaaatt attatatcag tacagttatt tttccattcc catgatggat gccatttatt 
006181 ttgccacttg gatctcatgt tttaaatatt ttgtaccaat ctatattgcc gatgataacc 
006241 ttattttctt ttgttgattt ggaacattct agaaattaca ggaccaaaat atatccgatg 
006301 ggtactctct gatgaggcgg cgattgttga acgaccgtct tctacttgct gaaagaagct 
006361 ttctgcaagc tgatggactt cagggaagag gatggttcaa gcatctggtg agccttaagt 
006421 gggtcagcca tgaacccact tataggtcaa aataagcagg tctgcggctt attttggcct 
006481 ataagtgggt ttcgcgggtt agccacttac actcttaagc ctcccgctat tcataagtca 
006541 taagtcataa ccaaatttag aaaaaaaaaa tgttgtgcgt gaccacgctt ttatatttct 
006601 tgctagatgt actcgcctcc ggaggactac gaaagcaagc tctcgttttt ccctggggtg 
006661 gcggacgcca tctcccggtc gagcaatcga agcgcgaaag aacagcaggc ggcggtgcgg 
006721 catgaggtgc ggaaaatctc tagggcaatc caaagagcag ctgatgttct tagaggcgaa 
006781 ttcagtaata ggaacgaatc tttatactct agcctttctg tggctccata aaaactgtgt 
006841 ataaataaaa tcgattgggg tttg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ825517 whatlal18j05 677
more... (Total Hit Count: 3 )
/rice/oryzabase