cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK067101     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0253900 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 8,403,250 -  8,407,353  ( + ) ;   4,104(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 8,403,250 -  8,403,329 ( + ) ;   80 (bp)
Exon 2 Location 8,403,919 -  8,404,195 ( + ) ;   277 (bp)
Exon 3 Location 8,404,837 -  8,405,346 ( + ) ;   510 (bp)
Exon 4 Location 8,405,434 -  8,405,493 ( + ) ;   60 (bp)
Exon 5 Location 8,405,721 -  8,406,137 ( + ) ;   417 (bp)
Exon 6 Location 8,406,576 -  8,407,353 ( + ) ;   778 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0253900 Os01t0253900-02 J013098K12 202594 J013098K12 2425 LOC_Os01g15000.1 AK067101 239 AP008207.2 255672756 BAF04528.1 113532145 NC_008394.4 297598437 NM_001049149.1 115435711 NP_001042614.1 115435712


Chromosome: 1 ,  position: 8,403,250 - 8,407,353 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ggatttttct tcacggtttc tctctcctcc cccacaaaca atcccacccc tctctttcct 
000061 ctctcctacc tccctcccat ggcgttgccg tctccgcata tataggaggc ctcctcctcc 
000121 ctcccatcct ctttctctcc tccattgctg ctcctctcct cgcaccacca cccgccgccg 
000181 tcgatcgccg gagtcgagag tgaacttggt tggttggttg gttgatctcg agtggtggag 
000241 cacacgggga tcatcgccga tttggctaaa cttaaccccg ctattgttaa cggcaacctc 
000301 gcggtcgcga gaggaggagg aggaggaggc ggccatggag gccctgaggt tcgtccgcgg 
000361 catcagcccc gccgcctccg cggctccgca gccgccaccg cctccggtgg cgcagcggca 
000421 ccaccagcag cagccgtcgc ggggcgttct gcacgcgccg ctgctccggc tatggccgct 
000481 cggtggcggc ggcggcggcg gaggaggagg aggaggagga ggaggagggg agagggtcgg 
000541 tgcggtcggt ggtgcggttc gcggcgagga ggcgaggagc cagcgcgcgg cggaggcaga 
000601 ggcggacgag cggaagcagg ggaactgggt gctgcagatg ctgcgggtgc agccacagtg 
000661 ggcggaggcg gcggacgccg aagccgcggg agtcaccgga gccgctcgag aaggcggcca 
000721 ggaagcgctc acggcgggcc gcgacggcga cgagtgctgc gcctcgtgcg gtggaggtga 
000781 cgacgaagga tgctgcggcg tcgaggagga cgacgagagc gacggcaagg tgttcgaccg 
000841 cgcgaccttc tcgaggctcc tcaggaaagt gtcgctcggg gaggccaagg agttctccaa 
000901 gatgtcctac ctctgcaaca tcgcctacat gatccccaag atcacggtaa gatcgaaagc 
000961 atcaatgcga gtgactgcta ttctacaatt caccgatgcg gtaatcacag ccaataattg 
001021 gtggattgtc tacacgccaa ttcgattgct ggtgatgaac tgttcatggt tgagtccttg 
001081 tccatgctgt aaattcaaga gaaatgcagg ttgtggtgtt actaagaatt cttatttagt 
001141 ctgttttggc ttctactacg tattgtctat gcatttcctt tacagagata gtgaagaatt 
001201 tcctttactg ttctgcaaaa ttatgcatta tgccattatc gattattcgt cctggtcccc 
001261 tatgtgcttt tggaccttat agtggggtct tcctgaagga tttgatggat tagtgccagg 
001321 tctgcttaat gcaattatac tcttggagct atctgtgcct gagttgtatt tgtctattgt 
001381 tgtctttcaa ttggttgctt cacttgagct gctgcttctg gcatatggat acttatttgg 
001441 tgtggtaatc gtgatgttgt taattacaca attacctttc tagtacctca taactagatt 
001501 atgattgcaa tttgcaagtt tcctttctga cattctgtgt gatattagta tttcattgcc 
001561 tgacttagca actgtttgct ttctcagcca aaattgctgc ggaggtacaa tttgcggttt 
001621 gtgacttcat cagtacaaga gaaagccaaa actggtgttg atcagaagca ggagctgaag 
001681 actgaggaag gtgaatcttc agatcaagaa tctgaagttg tagagaaccc tgagccaggg 
001741 agcaataaga agaaagaaag tgggttgggg gtaaacccct tcggcgcata ccatgtcatg 
001801 tcgtctgctg cctcttattt acattcacgg gctatgggcg tcgttccctt tggttccagg 
001861 aatgatggca agaacgatcc aaccatcatg gccattgtaa acggtgagag tggtgaaggt 
001921 ttaaccatgg atgaagcttc atttgtggcc actacaaatt cagttacctc catggttgct 
001981 gccaaggaag aaacaagaca agctgttgca gatgatctga actcttcaag atcttgtcct 
002041 tgcgaatggt tcatttgtga tgatgatcaa ggcagcacaa gatactttgt ggttcaggta 
002101 tgtcttctgc ccaatatatc atgattcgtg taattttcac tttccctggt tcatcttcat 
002161 caatttttta ttgttaattg gcagggctcg gagtcaatcg cttcttggca ggccaacctc 
002221 ctatttgaac cagttaaatt tgaggtatcc tactagtctg ccatcctaca tttctcagtt 
002281 tctcatgaat gatggataga atcaatcttg ccaatattca ttcattgtgc accagcagct 
002341 tcattattta gatgtgcatc atggattgat caagtgtatt aaattgacac acaaacattt 
002401 aatttgacat attagacgta ggaagggctt gacaaattta tgtaagctaa gacatttgtg 
002461 atgttttgca gggactcgat gtgctcgttc ataggggaat atatgaagca gccaagggaa 
002521 tgtatcacca aatgttgcca tatgtcaaat ctcacttgag aagttctggt aaatctgcaa 
002581 cgttacgctt cactggtcat tctcttggtg gtagtctggc tttgcttgtg aatctaatgc 
002641 tactgatgag aggagcagca cctgcttcgt cgttgttgcc tgtaataaca tttggtgcac 
002701 catgcatcat gtgtggcggt gaccacttgc ttcgtaaact tggattgcca aggaatcatg 
002761 ttcagtcagt cacgatgcat cgagatattg ttcctcgagt cttttcgtgc aactaccctg 
002821 accatgttgc taatattctg aaactagcca atgggaattt ccgcagtcac ccatgcctca 
002881 caaatcaggt agattcatga atccacttca gttgataaat tagctcattt atgtggtaat 
002941 aacagtatat gttcctgaat ttaatgactt aagactacaa agaaaattta tctgatgctt 
003001 tgacatggag aacaaataat aaacccatca gttggttgaa ttatacagcg aactgtgccc 
003061 tgcaggttga agatctagca tgatgtcctg gctgtcacat tttcagggac tgaaaaacaa 
003121 cacttctttt taaaacaaaa gtaaaagtag ttaaaaaaaa tattggcaaa gaacacttgg 
003181 atctttactg agtactgcaa tatgcagctc ttatagtcat cacccatcac cacttagttt 
003241 tcttgtttgt aaaatgttca ctttgtttgc atgttaccaa aattgaccaa caatggttgt 
003301 aaccctctct gtggatttca ctgcagaagc tcttgtacgc cccaatgggc gagatgttca 
003361 tcctgcaacc tgacaagagg ctatccccgc accacgacct cctcccgccg gacagcggca 
003421 tctaccacct gagcgactcg tcgtcgtcgt cgggcacctc cctgcggcgg ctccggtccg 
003481 ccatgtccac cttcttcaac tcgccgcacc cgctcgagat cctcaaggac aagagcgcct 
003541 acggccccaa gggcgccgtg taccgcgacc acgacgtgaa ctcctacctc cgctccgtcc 
003601 gggccgtggt gcgcaaggag gtgcggcggc accgggagac gcggcggggg cggtggcggc 
003661 ggctcctcct gtggtggccg ctcggcgcgc acggcgcgct ggccggcgcc ggcgtgctcc 
003721 tggacgccgc cgtggagggc gggagggaga cggcgaggca ggcgcgggcg cacgcccggc 
003781 tgctcgtcgt cctgctggtg ccggcgaagc tgctcgtgat cggagccttc ctggtcgtca 
003841 gattgatgtg attcgcggac gtggttagat cccatccatc cgttcattca ttttgttggt 
003901 ttacacacca cactgctgca gtgctgctgt atgctactgc agcaatgatt ctttcttccc 
003961 agagtggaat gccatacaag tgtcacaccc agatgctgat tttctgtttt gacactaaaa 
004021 aaagaaggac ctcagataga tgaagatcaa atgtcaatta attagactct aaactatatt 
004081 agaaatttat taattggact cagg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ903605 whthkles31n18 577
more... (Total Hit Count: 4 )
/rice/oryzabase