cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK103524     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0244600 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 7,694,647 -  7,698,518  ( + ) ;   3,872(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 7,694,647 -  7,694,950 ( + ) ;   304 (bp)
Exon 2 Location 7,695,084 -  7,695,269 ( + ) ;   186 (bp)
Exon 3 Location 7,695,381 -  7,695,493 ( + ) ;   113 (bp)
Exon 4 Location 7,695,589 -  7,695,772 ( + ) ;   184 (bp)
Exon 5 Location 7,695,909 -  7,696,006 ( + ) ;   98 (bp)
Exon 6 Location 7,696,679 -  7,697,144 ( + ) ;   466 (bp)
Exon 7 Location 7,697,908 -  7,698,518 ( + ) ;   611 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0244600 Os03t0244600-01 J033131K12 214377 J033131K12 14979 LOC_Os03g14080.1 AK103524 4089 AP008209.2 255674134 BAF11448.1 113548005 NC_008396.2 297602023 NM_001056069.1 115451866 NP_001049534.1 115451867


Chromosome: 3 ,  position: 7,694,647 - 7,698,518 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atatcctctc ctacgatact gcgcgctcag cacagaagag gaaggtatct taactagccc 
000061 aggataccac cacacaccga gtactgttac gtgttcacgg tctagctaag cagtgatcat 
000121 gggctcggcg gctgacggga gcctcgccaa cgagaaggcg ccggccgaga cggtcggcgt 
000181 cggccgttac gtcgaaatgg agcaggacgg cggcggaccc agcaccgcaa agtcccggct 
000241 ctccggcctt ctctggcacg gcggctcagc ctacgacgcc tggttcagct gcgcgtccaa 
000301 ccaggtgacc acattttctg atcgacgcta tgcttgcttc cattttcttg cgaaatgcat 
000361 gcaatctaag gtaggtttgt gccgtgatcg atgtgtagcc gttcggttaa atctgcattg 
000421 ctgtgtgctt cgatcaggtg gcccaggtgc tcctgacgct gccctactcg ttctcccagc 
000481 tggggatgct cagcggcata ctgttccagc tcttctacgg gctgttgggc agctggacgg 
000541 cgtatctcat cagcatcctg tacgtggagt acaggaccag gaaggagagg gagaaggtgg 
000601 acttcaggaa ccatgtcatc caggtaaaca aaaactacat tgttcaaatc catttcgccg 
000661 ccgtacggtc ttctcttctc tgtatgttct gtaagttcag accctgaaga cttcaaccat 
000721 tgatgtgcat gcagtggttc gaggtgctgg acggcctgct ggggaggcat tggagaaacg 
000781 tcggcctggc cttcaactgc accttcctac tcttcggctc cgtcatccag ctcatcgcct 
000841 gcgctaggta cgtacctgca gctactaaag ccactgaagt ctgaatgtac tcattagtat 
000901 ctgttttagc gtctgtttta tgtgtacaat gtgtgagtgc agcaacatct actacatcaa 
000961 cgacaagctg gacaagagga cgtggaccta catcttcggc gcgtgctgcg cgacgacggt 
001021 gttcatcccg tcgttccaca actaccggat ctggtcattc ctcggcctcg tcatgaccac 
001081 ctacacggcc tggtacctcg ccgtcgcctc cctcatccat ggccaggtag tacaacacaa 
001141 aagcaccatc tgttagcatg cagcatgctt gcatttctcg tctgaatagc gaggcgcatg 
001201 cctgaacatt attacattgc gttgtgctga aaaaacactt gtgttttttg tatgaatatc 
001261 aggtcgatgg agtgaagcac tcgggcccta caaagatggt cctctacttc accggggcca 
001321 caaacattct ctacaccttc ggtgggcacg ctgttactgt gtaagccgac aaacgctctc 
001381 tattctatgc ccctgtgtca aaaggaatac tgcacgaaat ggtctcagtc acatgccaca 
001441 ccgtagagag taccgtaggc tgcaaatttt cttttctgaa actgcacaaa ttcaacaagc 
001501 cagcacattt cagaaaagca actacgactc gaatcaaagc atctaccccg cactgttgca 
001561 tctttggcag cgaacccatg cactcccatt tccaggctac acactggcag gaggagtact 
001621 cctctgctca ttcattcatg gtttggacag tcaaaagagc tatagctagc gtccaaactc 
001681 gggagagcat ttgctgcttt acctcagggt ggctcctgcg gcctgcgcct gcattgctgt 
001741 agatacgatg cccatcctgc catccaccac ggaccacgga tggacaacgc cacgaaacat 
001801 gcacggacaa ggcacggatg tccacgtaac tctgtaccgt gtacccacgc tacgagctag 
001861 cagtacagta aggcaaaggc aataacgcca cgcctccgct ctcagtatct ggtcaccctc 
001921 cttgcaggct cgcagttaca tcgatcgttt acagcagcgt caatactgta ataattgacc 
001981 aaactgtcaa agcagtttgt gacaacatta cgtgtgattt tggtgcgcgc agggagatca 
002041 tgcacgcgat gtggaggccg cagaagttca aggcgatcta cctgatggcg acgctgtacg 
002101 tgctgacgct gacgctgccg tcggcggcga gcgtgtactg ggcgttcggg gacgagctgc 
002161 tcacgcactc gaatgcgctg gcgctgctgc cgcgcacggc gttccgggac gccgccgtgg 
002221 tgctcatgct catccaccag ttcatcacct tcggcttcgc ctgcacgccg ctctacttcg 
002281 tctgggagaa gctcatcgga ctccacgact gccgcagcct cttcaagcgc gccgccgcga 
002341 ggctccccgt cgtcgtgccc atctggttcc tcgccatcat cttccccttc ttcgggccca 
002401 tcaactccgc cgtcggctcc ctcctcgtca gcttcaccgt ctacatcatc cccgccctcg 
002461 cgcacatgat caccttccgc tccgcgcacg ctcgtgaggt atagtaaaaa tcttggcatc 
002521 tttttaatca ctgcgctttt tttttaacct tttggtttca cttttatcat gcgagtttac 
002581 tagtgtagga cttgcatgtc gcattgcact ttacattggc acgccaaagc tagctaggta 
002641 ctgattagat gccacttagc acagtggtta tacatttatc aagtgagtta gacgaatgct 
002701 agttgggtcc acccttgttc gggatggact atggaaagat gctgatacaa aaggtaacct 
002761 tggttatgat caagggtgaa acatcattag ggtggtaagt attgccgctg cttttgtcgt 
002821 actgaatgta agacaaaact gcggcagtgt tgatctgtct tttaacgtgg caagaaaagc 
002881 aaaagggtgc tagtaccaag cttagaagta gactgttgag gaaaaacagg agacagaggg 
002941 ctcttttgta ccattcgtcc tggtatattt ggacgagcat cgaaccactc tctttgcaag 
003001 acgacacaaa aaagttcagt actactttct ccgtttcaca atttaagtca ttctagtatt 
003061 ttccacattc atattgatat taatgaatct agacatatat atgacttata ttataaaacg 
003121 gagtgagtag caaatttaga agtcatgtga tttgtactca gtactacatt ttaatggagt 
003181 acaagctagt agctgtgtgc tctgttgttg tgatggtgtg agcctgaact gagaatcctt 
003241 tgtctgaatg ctaaactgca gaacgccgtg gagccgccgc cgcggttcgt ggggcgatgg 
003301 acgggcacgt tcatcatcaa cgcgttcgtg gtggcgtggg tgctggtggt cggcttcggg 
003361 ttcggcggct gggccagcat gaccaacttc gtccgccaga tcgacacgtt cgggctcttc 
003421 accaagtgct accagtgccc gccgccccct ctgccgccgg cgggcgccgc tccgaacgcc 
003481 acctggccgc cgttcccggc gacgccgttc aacgccacca ccgccggcct cgctccggcc 
003541 cctgctcctt cgccggcgca tttcttcggc cgccaccacc ggcatcacag ccacgggctc 
003601 tgaacactga aatgtacgta ccagggcaat gctcgagctt tggtttagct atagttgttc 
003661 actagcgccg tcactaatta gtcttagctt agcacaaagc tgcatcttct ctagctatca 
003721 gtagcatgtc agtcagacgg agtatcccgt ttcaagttcc ttggttctgt actgcctcct 
003781 ggcgtggagc tcaaaaaacg aacagaaaaa aagggaatgt tgctacggcc gcagatgcaa 
003841 gagccagcta atctagcctc tttactttct ct

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY847815 bart48f05 620
more... (Total Hit Count: 6 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ730081 whvs7k01 693
more... (Total Hit Count: 9 )
/rice/oryzabase