Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK103010 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os03g0776000 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 3 |
| RAP - Location, Length | 33,073,803 - 33,080,601 ( + ) ; 6,799(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 33,073,803 - 33,073,955 ( + ) ; 153 (bp) |
| Exon 2 | Location | 33,074,151 - 33,074,210 ( + ) ; 60 (bp) |
| Exon 3 | Location | 33,074,349 - 33,074,425 ( + ) ; 77 (bp) |
| Exon 4 | Location | 33,074,509 - 33,074,590 ( + ) ; 82 (bp) |
| Exon 5 | Location | 33,074,694 - 33,074,741 ( + ) ; 48 (bp) |
| Exon 6 | Location | 33,075,015 - 33,075,170 ( + ) ; 156 (bp) |
| Exon 7 | Location | 33,075,249 - 33,075,345 ( + ) ; 97 (bp) |
| Exon 8 | Location | 33,075,444 - 33,075,486 ( + ) ; 43 (bp) |
| Exon 9 | Location | 33,075,889 - 33,075,956 ( + ) ; 68 (bp) |
| Exon 10 | Location | 33,076,058 - 33,076,142 ( + ) ; 85 (bp) |
| Exon 11 | Location | 33,076,216 - 33,076,264 ( + ) ; 49 (bp) |
| Exon 12 | Location | 33,076,485 - 33,076,557 ( + ) ; 73 (bp) |
| Exon 13 | Location | 33,076,627 - 33,076,687 ( + ) ; 61 (bp) |
| Exon 14 | Location | 33,077,336 - 33,077,402 ( + ) ; 67 (bp) |
| Exon 15 | Location | 33,077,474 - 33,077,530 ( + ) ; 57 (bp) |
| Exon 16 | Location | 33,077,628 - 33,077,681 ( + ) ; 54 (bp) |
| Exon 17 | Location | 33,077,773 - 33,077,901 ( + ) ; 129 (bp) |
| Exon 18 | Location | 33,078,404 - 33,078,467 ( + ) ; 64 (bp) |
| Exon 19 | Location | 33,078,574 - 33,078,647 ( + ) ; 74 (bp) |
| Exon 20 | Location | 33,078,733 - 33,078,786 ( + ) ; 54 (bp) |
| Exon 21 | Location | 33,078,891 - 33,078,959 ( + ) ; 69 (bp) |
| Exon 22 | Location | 33,079,678 - 33,079,767 ( + ) ; 90 (bp) |
| Exon 23 | Location | 33,079,933 - 33,080,040 ( + ) ; 108 (bp) |
| Exon 24 | Location | 33,080,170 - 33,080,601 ( + ) ; 432 (bp) |
Chromosome: 3 , position: 33,073,803 - 33,080,601 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 gcggagccct actattttca gcccacggtg acggaagaca cgggaagaaa ttggaaaaag 000061 gaaaaaaaaa tctgagatat aaaaattagt aattcgcagg aagcgaagcg cggatccgct 000121 tcctcaccca ccgatcggct tcttcccccc acggtataat tcctcgcccc cacgaattta 000181 ttttttgctc tctactgttt gctatcgcat ctggtttttc tgccgatttc gttcgattcc 000241 gctttggttc tgatttccgg tgaagatgga tgcgttttgc gctgatgatt tggttggttt 000301 cgttgatcgt ttgggtgatt tttgttgttt tttttttggt tgttgcagct agcagccatg 000361 gcgtcgtcgg cgctcatctg cgacaccgag cagtggaagg gcctccaggt gcgtggattg 000421 atggctctgt tatcatacgc gcgcgaagct ttgagtgctc gcattgctgc cgcttttatt 000481 cgatgtatat gcttcgatta gattggtaga gctcactatg atttcgtgtt ttggtgcggg 000541 gagcaggcgc atgttgggga gattcagaaa acgcacctgc gccatctgat gcatgatgtt 000601 gagcgctgca aggcaatgac agcgtaaggg ttgaattctt ttttctgctg ttgcattgca 000661 tgtgttggtt tctgctttcg tttctcaggt gcttgttgat tgacagtgag tatgaaggca 000721 tatatctgga ttactcgagg cagcgtgcga ctggcgaaac catggagaag ctgtttaaat 000781 tggccgaggt gagacctgtt tgatgtatta tggttttggt gtcatttata tggtggggtt 000841 ggtcttcctg aataataatt tgggataata tccctatcca atttattgta ggctgcaaag 000901 ctcaaggaga agattgagaa gatgtttaga ggtgacaagg taagcatcat gacctgcaaa 000961 agatgttcag tctcctgagg gggacgttta ttcagtaatt tcatcatatt taaagagagt 001021 gcctttccat gaacactggg tacacatagc ttgcatgtaa ttttgcttag taaaaagctt 001081 gactagttgt tctgagatct gatgcataat ttagtattaa cgtttggact atttttaagt 001141 ttcccattcc atatacattg tttgaagttg ctgtgatgca tttgtaacat tacttgattt 001201 cttttttctt agataaatag cacagagaac agatcagtgc ttcatgtagc tctaagggct 001261 ccaagagacg aagtaataaa tagcaatggg gtcaatgtgg ttcccgaagt ttggggtgta 001321 aaagataaaa tcaagcaatt ttcagaaact tttaggagtg gatcatgggt aagttgaaga 001381 ttttcttgaa ctcaccaaat gtttttgaac accgaagatt gattactgct attatttata 001441 ctgtaggttg gggcaactgg taaagcattg acaaatgttg tgtcagtagg aataggtggt 001501 agctttcttg gtcctctgtt tgtgcatgct gccctccaga caggtgaact ttttatactg 001561 ttcattctta tgttctccag actctgactg tttaccgaaa attatgatct ggcgaaccct 001621 gaaagtcttg ctaaatttca gatccagaag ctgcagaatc tgccaaaggg cggcaattaa 001681 gattgtaagt gtgtatgaca ggttttcaaa tgtaatgtgc tgccaaacag caattctatt 001741 caatgctttg tgaactgtat gtttctgcgg catatttcta atactaatgt gaacaccatt 001801 tgttccagca atttgttcta ctgggtcata gtattacctc tgcctttatg tcttctcagt 001861 aatttgttcc agcagttttt actttgtgaa atcagtcacg attcctgtta gatcttgttc 001921 ttctatgcta tatagggtct tgtgctatgc tgagcacttt aatttacact aatcttaatc 001981 tgaatgatgt tttactgttt ctattattca gtttccatat ttttatatca ctcatgcaca 002041 atgcttttca tcgattaatt tatatgtaat tttggttatc ttgtagtctt gcaaatgtcg 002101 accctgttga tgttgcacga agcatcaaag atttagatcc tgaaacaaca cttggtaatc 002161 accatgtttt gctctttcat actaacactc agtacaggtg ttctgtcaga cattacgaat 002221 atctgcagaa gttttaattg tgtaaaaact tgcagttgtg gtagtctcga agaccttcac 002281 aacagctgaa acaatgttaa atgctcgaac tcttaaggag tggattgtct cttctcttgg 002341 gttagtttat tagcacctga aacacctttc gggtccatta tcatcgtgac tgatcctaaa 002401 tgtattgatt cagacctgat gctgttgcaa aacatatgat tgctgtcagt accaatcttg 002461 aggtacttct ggagctttta tttttcgatt caaatttcac ttgatctaat ctattttctg 002521 cattctaaat tacgtcacat ttggattata aattgtgttg aacttgcatc gttgacatgt 002581 tcagctatta tgctttcata ctacaaatgt agtgttattc atcaatgtac tgtttatcgt 002641 aatatgatga aatttcatct atacattttt cttgttttga agcttgtgga gaagtttgga 002701 attgacccga aaaatgcttt tgcattttgg gactgggttg gtggccgcta tagtggtgag 002761 aattttttca attaaaaaat atgcatacct tatgtttgtt tgtaacttta atcttatgtt 002821 gcagtttgca gtgctgttgg tgtcctgccc ttatctcttc agtatggctt tccgattgtt 002881 cagaagtatg ctatctattc ataaatgtct acttttttta attacaaata gataatacaa 002941 taccgttagg agttcaaatt tgcagcatag gatcaatttc attactataa aataatttgt 003001 tgttttcttt ggctctcttg tgtttgcaat acacatatta tgctagagtc tttgaaaaac 003061 aatggcactg tggcactaaa caatgatata ctagaaacag aaaagcttat agcatgataa 003121 taatactgca gacttatctt accgataggt gagtgctaat aactatacct attttcaagt 003181 tctaggaaaa gattttgtta aatcaggata cccttttgca ttgtttcata cttcatatac 003241 gtatcactgg tcgccttgac acagaaatat aagacctggg gtcccttttt gtccagcaga 003301 atgtatcttc tggtccttgt ggtactgtgg aaattatgta ggatgtggtc ataatgagga 003361 tactgatgta cggtgtgaaa tttcttgttt ctatggaaag taaaatccga tgatatgatg 003421 attaaattat gctggaattc tttaataagt ttttcgcttg gtcaagttgg agggccttga 003481 ggctaaaatt cgatgataga tggtgctcta ttaataattc ttttcttttg aagatttttg 003541 gagggtgcag ccagcatcga caaacacttt cgttcatctt catttgagaa aaatattcct 003601 gtaagtggct tttctattgt gtttactgtt gccaaccacc cttataacag gctcttatca 003661 tttatgggta ggtactcctt ggtttgctga gtgtgtggaa tgtttcattt ctcggatatc 003721 cagctagagt aagaaattct gtcccattgg atcgtatttt caattacgaa ttgacccatg 003781 ccttcatttg ggtgctatct ctaatataaa tgtttttttt tctaggcaat actgccctat 003841 tcccaagcac ttgagaaatt tgcaccgcat attcagcagg ttcttcacta gcttcctttt 003901 tcccagttcc attattgcat tctcgtccgg ttatttctaa gtcataacat gtgctcatta 003961 tggtgtaaag cttagcatgg agagtaatgg aaagggtgtc tccattgatg gtgttcaact 004021 gccctttgag agtggtgaaa ttgattttgg tgaacctgga accaatgggc aacacagctt 004081 ctatcaatta atccatcagg taatgattgg tacatctagc atgttatgat ctaggactta 004141 cttgactagc atctaaggta tgcaaagctt gacaatgcca tggtgcttag agttgatgat 004201 attttgctag cgtacagcat ttctttttct ctttgctgat ttgtgatatg ctccatttat 004261 tatgccatcg tccttttgca tcaatatgtt tatactttta tgaatggatt atgcaaattg 004321 cgaccatgct accttgtaca tttatcttgt cttgttcttg atttcttcta tagctctatg 004381 cgatatcagc actgtgtttt tcagtctgcg ttgtcattct ttcaacaaaa tattttaagt 004441 tatctcagta acactgactt cttagttctt acctttctaa gtatctaata atgcaaaagg 004501 aaaagaagaa ttagttagga aacttatttg tgaatatcca tctttgtttt ttatgaaaga 004561 aaaaacatct ttgttgataa tacttgtgcc taaacttcca gggaagagtt attccttgtg 004621 attttatcgg tgtcgtaaaa agccagcaac ctgtttactt gaaaggtgtt gtacatgatc 004681 ctttttttct ttcaaacctt aatatgttgc atgttgacct tgtgattatt caactgcatg 004741 ttgaacacct atgttgtgcg tattttttta ggggaaattg tgagcaatca tgacgaattg 004801 atgtccaatt tctttgctca gcctgatgcg cttgcttatg gaaaggtaaa tgatgtattt 004861 cggatatact cactttccat gagctgtttc tttttgttgt ttctgacagc agttcactgg 004921 atatttccag actcctgaac aactgcatag cgagaaagta cctgaacatc ttatccctca 004981 taaggtaata ataattcact cattccttgt ctagttttcc caagacatta tgctttcagc 005041 tatagatgta gcttctgaca gtgctttctt ggtcctttct tgttacagac ttttcagggc 005101 aaccgaccat cgcttagttt attgctgccc tcattatctg cttatgagat tggacaggta 005161 tgcaaatgca ttcggacact tgtttagagt tgcaagttta gtcctgaacc atatcaattc 005221 ttttcaccaa taggattctg atcttgttta gagttgtgcc gtggctctct tacctctatg 005281 gaggtaaaga tggagtgccc taaaatggct catatatata atgcattttc tcttcttcat 005341 gaggaaagcc tgaccatcag cgtcgaaaaa aggaaagcct gaccagcata ttccattttt 005401 ctcaagaaaa aacatgacta cgccggtttc ttgctatgtt taataccaaa tcaactgttt 005461 tttatgtaaa aaaagggggg aaattgagat gaattgacgt gcaggacagt gggcaagcta 005521 ctttgcttgt tagacctatg atagtaaagc ttgtgtgcag ctgccccctc cactgcagca 005581 tgtgagcaga gaaataaaat tgtgctgctt catcattttc ctttcttgat tgtaatcata 005641 tggcacaaca tttgttagaa tatagttttt tcttttttac atgatgcaat cctttgagtt 005701 ataatttaca tgatctggac cagctattaa atccatgcac atcctttttc attcatgtct 005761 tctttggaag agtatttggt tgactccaaa ttaccaggaa taatacttgg tttactataa 005821 attgcattat tgttttctac agacgtacta agcactagca aattctactt ttcagctttt 005881 agccatctac gagcaccgga ttgcagtcca gggtttccta tggggaataa actcatttga 005941 ccagtgggga gtggaactgg gcaaggttag tgcttgaata tttatacata tatttccatt 006001 ttgtttgaag gtctagtttt tggcttcaat tctagcatgt gtgactctca actttcccca 006061 ggcatatgtt tgtcttattt tcttcatctg aagactgaac tgtgttgtct gtattttttt 006121 ttcgtgtcag tctcttgcct ctcaagtgag aaaatctcta catgcatccc gcgttgaagg 006181 aaagcctgtc ctggggttta acagcagtac tacaagtttg ctgacacgat atcttgctgt 006241 acgttctttg atagttcatc ataatttatt atccatgtta tataattaaa tttagtttcc 006301 taagtgttct tgacagctca taccctagaa ctgagggatt tatgttgtaa tttaatctgt 006361 tttgtaggtt gagccatcca ctccttacaa cactaccaca ctgccgaaag tttgacacga 006421 cacgtttggc acgctattgt cttgagttaa acaagattac tagagtcttc atatcttgta 006481 ataagtttaa gttcgttttg gagttgttac aggcttacag ccagttctac agtactgtag 006541 tttcgttgtt ttcctttact ccgacctcca ggaaacgaaa tggaaaagaa aaaaaaagga 006601 aactgttgtt gaataaataa atcaagtcgt gtcagcatga ggaagctgtc attaaataaa 006661 ttaggtgaaa ccccgcgcat tgctgcgaga atttagtatg aagatataca ttaaaacatt 006721 atgtaaatta tgttggatga taatttaata tgtttgtgtt tgaaaagctc ttaaattata 006781 aaaactataa agatatagc |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| AK249595 | FLbaf44b12 | 2233 |
| more... (Total Hit Count: 13 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ899408 | whthkles19k06 | 711 |
| more... (Total Hit Count: 86 ) | ||
