cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK101822     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0351100 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 13,201,016 -  13,203,542  ( + ) ;   2,527(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 13,201,016 -  13,201,768 ( + ) ;   753 (bp)
Exon 2 Location 13,201,890 -  13,202,120 ( + ) ;   231 (bp)
Exon 3 Location 13,202,767 -  13,203,056 ( + ) ;   290 (bp)
Exon 4 Location 13,203,179 -  13,203,542 ( + ) ;   364 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0351100 Os03t0351100-01 212667 J033067J11 13519 LOC_Os03g22770.1 AK101822 39450 AP008209.2 255674134 BAF12028.1 113548585 NC_008396.2 297602023 NM_001056649.1 115453026 NP_001050114.1 115453027
Os03g0351100 Os03t0351100-01 212667 J033067J11 13519 LOC_Os03g22770.2 AK101822 39450 AP008209.2 255674134 BAF12028.1 113548585 NC_008396.2 297602023 NM_001056649.1 115453026 NP_001050114.1 115453027


Chromosome: 3 ,  position: 13,201,016 - 13,203,542 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ttcttatccc ccaagcaata acgaggcgtc atctctctcg tcatcttcta ctctccctcc 
000061 tctagtcctc ttcttcttct actttgtacg cgccactcac tctccgagct tgacggcggc 
000121 ggcggcggcg gaggtcgtcg agtggtggtc ggggagatgg gtcaagatga ggtggaggta 
000181 ggtgcggaga agaaggatca agaactaccg gaggtggagg tggtcgagga ggaggaggag 
000241 gagggatcca agaaggcggc ggcgggctgc gactactgcg gcgacgcggc ggcggtggtg 
000301 tattgcaggg ccgacgcggc gaggctctgc ctgccatgcg accgccacgt gcacggcgcc 
000361 aacggggtgt gctcccgcca cgcgcgcgcg ccgctctgcg ccgcgtgcgc cgccgcgggg 
000421 gccgtcttcc gccggggcgc gggcggcttc ctctgctcca actgcgactt ctccaggcac 
000481 cgccacggcg gggagcgcga cccggcggcg ccgctccacg accgctccac ggtgcacccg 
000541 tacaccgggt gcccctccgc gctcgacctc gccgcgctcc tcgggatctc ctactccgac 
000601 aaggcggcgg cggcgaccgc ggcggcgggg ggcgacgacg gtgggtggtg ggccatctgg 
000661 gaggagcccc aggtgctcag cctcgaggat ctcatcgtcc cgaccacctc ctgccatgga 
000721 ttcgagcctc tcctcacgcc atcttccccc aaggttcgct tttacagcct tctactgttc 
000781 actgtccgaa aaaaaaaaat cccccccttt tctgaatcaa cttctattta atttactccc 
000841 atttatccgg cttaattctt gtctgctgca aaagattcag aactcgccgg atgggaaggt 
000901 gaatgaggag gtcatacgac agctaaccga gctcgccaat tcagacggcg gcggcgcgca 
000961 gatttgggct catcgcgagg cggcgcaggc cggcgatcat cagttacctt catggggaac 
001021 aacaacacaa cacaacactg gacatggcaa tttcggtact gcaaacagca atgaggttgc 
001081 aaccatgccg acgcctggtt atgaggtttg atctacaatc ttcagcatat ctgactaatt 
001141 tgcagtgctg tttaccctat ggatgtactt ttgtcactgc aattgttagt caagcgataa 
001201 atggtactag attggtagtg tccgcagaat cttcgtctga acggtagaaa ctatacagat 
001261 tctgtatcat atgcggtgaa gatattccta ggcatgcttt gctgtaccta tgttgatggg 
001321 gaatttattc tgtagtgtca actcaagcgc tagcaactca agatacatct gagtcagaat 
001381 aaagtcattc tagtgaagaa cccctaaatt ctctttctct ttttcagaga gaagaagccc 
001441 caaatttgat atgattctgt tcttttccta tctattgtca tattcgtgat tttgtgtaag 
001501 attcttattt ggtttacacc tactgacaca tacattaatt ttttaaacct ggacaaggat 
001561 accattctac ccattgatta tttattgaca gtcctgttca gataggggga attgtatcca 
001621 cactgaaatt ggccatgaaa aacgcagagt aggcctagtt gataaagagc taagattttg 
001681 attgtcagtt cttttgcgca aaatagatgc ttacttggct atctattaat ataactttat 
001741 ctatatggca gaatggtgga tgggataaca gcgattaccc tgcgctaaat gatccgtgca 
001801 aggtcgagtt cacatatgag caacctccag ccagctcagc tgaagcatgt atttcatcat 
001861 ttgttcagat gtctgaactt tgccccagca tgagcaatgg tagcagcatg gaggaaaccc 
001921 accagacaaa ccctggaaat ggcacgccaa tgcaagttct acccaaaatg ccagaatttg 
001981 ttccttgccc cgacaggaac ttggtcattt ctcgctataa agagaagagg aagacaagaa 
002041 ggtgacataa gcttatggca agcatgatgt ttttatttcc tcttgaagct tctcttggac 
002101 tcttacccag gatttttcga tttgaaacat aactgtgtga caatgaaatt ctaattattg 
002161 cagattcgac aggcaggtcc ggtatgagtc ccgcaaagct cgtgctgata gcaggctgag 
002221 gattaagggc cgttttgcta aagtcaatca gatttgagcc ttcatttctg taatatattt 
002281 tgcatcttgg acatgagtaa tactaattag gaccaagcag atatagtaca agaaaaaata 
002341 tcagcatttt gtatgtaact atgtacccac ccagtggcta cgccacgctg aggagaattt 
002401 agtttcatcg aatctctgta tatagtgttg catcgaactc agtgatacta tttacatgca 
002461 aaggatattg tcattatggc tgtttcccca tggttttact gcaaactgtc tgctgtgtta 
002521 ctactgc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY868658 rbart43g08 511
more... (Total Hit Count: 2 )
Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ830851 whatlal33i03 242 view details
/rice/oryzabase