cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK101784     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0822000 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 35,407,145 -  35,409,828  ( - );   2,684(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 35,407,145 -  35,407,756 ( - );   612 (bp)
Exon 2 Location 35,409,123 -  35,409,828 ( - );   706 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os03g0822000 Os03t0822000-01 J033065B20 212629 J033065B20 12196 LOC_Os03g60720.1 AK101784 28067 AK101784.1 32986993 BAG95225.1 215678788 NC_008396.2 297602023 NM_001058266.1 115456260 NP_001051731.1 115456261 Q852A1 EXPA7_ORYSJ


Chromosome: 3 ,  position: 35,407,145 - 35,409,828 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 attgctacta ctaccacgca gcgggtgaca cacacacaca caaaaagtca caaatctcta 
000061 cgtttttttt cctcgcgagg cgtagggcgc gcatacgcga cgcgcgccat tatttggtcc 
000121 gcctcgtgcc tccataaata ccgcctccgt cccgtccgcc tcctccccca cactccactc 
000181 cactccactc tcgccgctcg ccgttgccac tcgcactcac aatgtcgccg gcgccgcggg 
000241 tgttggtgtt ggtggtggcc acagtggtgg cgctgcaggt gtcgccggcg gcggggcgga 
000301 tcccgggggc gtacgggggc ggggagtggc agagcgcgca cgcaacgttc tacgggggca 
000361 gcgacgcgtc agggacgatg ggcggggcgt gcgggtacgg gaacctgtac agccaggggt 
000421 acggggtgaa caacgcggcg ctgagcacgg cgctgttcaa ctccgggcag agctgcggcg 
000481 cgtgcttcga gatcaagtgc gtgaaccagc ccgggtggga gtggtgccac ccggggagcc 
000541 cctccatcct catcaccgcc accaacttct gcccgcccaa ctacgccctc ccctccgaca 
000601 acggcggctg gtgcaaccct cctcgccccc acttcgacct cgccatgccc atgttcctcc 
000661 acatcgccga gtaccgcgcc ggcatcgtcc ccgtctccta ccgccggtaa atataatctc 
000721 tcaccaccat tcttgctgct agtactgcat ttcttggtga cgacattcgc cttggttaga 
000781 ggagcaggaa cagtagtact tctaggcttg ttttcttggt ccaatggaag cttttgtttt 
000841 gttttgtttt catttcattt cgcgtctttt gagacggcgt ggggctgctg ctgctgctgc 
000901 ttctgcttct gcagcgtttt ggactccagc cacttctgct tccgcactgc tttattactg 
000961 tagtaaataa atttgatacg gtatactcca gcgcgtagtg gctgcacggc caggtgagta 
001021 atattttccg agtgggatgg aaatgtgcac cgacggcgcg gctttaaaag cggaggagcg 
001081 tgatagtagc ggctagaaac gctgctcact gcccgtaaaa agttggcttg gtacgtagct 
001141 ataaatgggg tgtcccgtgt tcgctttgcc cttgtgcatg tactcgtgta ccggcgctac 
001201 gcaccgtggc tcgcattgag ccgagcccaa actctgctta gcgcttaatc actgccaatt 
001261 ttttttccat acatttgctt gtagtagatc tcatgctagt ggttacattc ccatgcttta 
001321 attaacagta cagtagaaag gaggagtaga tttttgggag cattggcctg aataattgta 
001381 ccactacacc ataaagggac acaaaagatg tacagggaaa aaacagcact gttactgtgc 
001441 aaatgtgtgt agtgtaagac cactgggcgc actggcagca gcgagaggcc cagagaaaca 
001501 tccaacgcga gtcaagcgtg tagttgggag gagtagtaga attccgtagg gccaaggcgc 
001561 acaggcaaaa cgcgcacacg cgcttttgac ctttttcgct ttccgctgtg ttgtcctggc 
001621 ccggttgggt ggttgggttg gtgccgcccc gtgatcccgc tccgtacccg cgcctccctc 
001681 gcttcgctct ccgcaacctt ggcgtggcgt ctcgccgtct cccatgccct ggcgggaaag 
001741 acgacggtgt gaggtgatga ggtgaaatgg caggtctgcc cctccgttcc ttctgtggct 
001801 ggtcccctac tgcaggggcc ttcccgtcct ttcgtcctgc cggcacaacg ttactacgcg 
001861 tgaggaggct gtgtggcccc atctctgcat gaacgactgc actctcttcc tggtcatatg 
001921 tccttgcctc cttttggctc cttgctacct atagttacag cgaaataata tttgctccta 
001981 ctactagtat tgttctgttg atcttgattt taatgtgata ataatgcgtg gttaatgagt 
002041 gatgaaaatg ttggcgtgtg tgtggtttgc agggtgccgt gcaggaagaa gggaggggtt 
002101 cggttcacga taaacgggtt caggtacttc aacctggtgc tgatcacgaa cgtggccggg 
002161 gccggggaca tcgtgagggc gagcgtgaag gggacgagca ccgggtggat gcccatgtcg 
002221 cggaactggg gccagaactg gcagtccaac tccgtcctcg tcggccaggc gctctcgttc 
002281 cgcgtcaccg gcagcgaccg ccgcacctcc acatcctgga acgccgcacc cgccggatgg 
002341 cacttcggcc agaccttcga gggcaagaac ttccgggtct gaattgaatg aagcaaaact 
002401 gcaatatacc ctcttattta ctcatctagt aattactgtc attatagcga gcaggtgtgt 
002461 tttttacctt ggttaagttt gggttcttct tcggttggtg gccttgtcaa agtgaggggc 
002521 cgggggaaaa caggtggtaa agactagtac tagtgtcaat tagggttaaa ctggtaaatt 
002581 gctagtactg ctgttactca tcatcatcat cgctagtggt cactgctagt agtagttgtg 
002641 ctagtgcatg tatggttatg gatactgcat catgttggtt ggtg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY853290 bast70d11 392
more... (Total Hit Count: 17 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ270964 whoh23h21 587
more... (Total Hit Count: 20 )
/rice/oryzabase