cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK100793     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0414400 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 17,804,478 -  17,806,172  ( - );   1,695(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 17,804,478 -  17,804,878 ( - );   401 (bp)
Exon 2 Location 17,805,890 -  17,806,029 ( - );   140 (bp)
Exon 3 Location 17,806,117 -  17,806,172 ( - );   56 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0414400 Os03t0414400-01 211635 J023121E03 7640 LOC_Os03g30092.1 AK100793 18537 AK100793.1 32986002 BAG94766.1 215704738 NC_008396.2 297602023 NM_001056897.1 115453522 NP_001050362.1 115453523


Chromosome: 3 ,  position: 17,804,478 - 17,806,172 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gagagccaac caccacgctg ctgctccgcc gctctttctc ccgtggtgaa cgaaaggtaa 
000061 ccgcgcctgc acaattccga tactttcgca attttctctc atcttccctt caaattcgag 
000121 cttacaattc cctctggaag tagaaggtgg ttggaggggg gcatccgagc atggaggggc 
000181 tgacgtccag cgagatcgcc ggcttcgggg tgggagccct gctggtgtgc gccaccatcg 
000241 ccgcccagag agtcgacggc ttcatcgcct cctcgcagag aacgtacact aaattccctc 
000301 atcatctttt ttttttcttt ctccctttct ttgtctgact ccaagctaac tactgttagt 
000361 tcctcagcgt ctccaacacg aatctgaatt ttatcctttg tacggaacag taatctgatt 
000421 tgttggtagg ctagactgct agtacaacat ggagtagtca ccaacagtaa aaagatggga 
000481 aagtgcaaat cttatagcgg tcacattagg ggctgtttgg tttacaggga cttattctaa 
000541 gtccatgtca catcggatgt ttggacacta atttagagta ttaaatatac actaattaca 
000601 aaacccattc cataagcttg gactaattcg cgagacgaat cttttgagtc taattacgcc 
000661 atgtttttga caatgtgatg ctacagtaaa cttttgataa ttatggatta attaggctta 
000721 aaaaatccgt ctcgcggatt agctctcatt tatgaaatta gtttttttat tagtccatat 
000781 ttaatactct aaattagcgt ccaaacatcc gatgtgacat gggctaaaaa gttttagccc 
000841 catctaaaca cccccttagt agctgttagt tttcaccggt ggttaggctg ctcagtgatt 
000901 ttgatggcta gcgtgcccag atttcatttt tgtggcctta gttgtgctgg tagctagcca 
000961 tcttcagaat tgcgaacacg atgggtttta ggggcagagc ttgacatgtg tttttcaact 
001021 gaataactcc tgggtggtca ctctttcaag acacatggtt tttgcatgtg aaaaaattta 
001081 acatcgatgt attactactc aattgaaagt gtacttcctt tttcctcttt atcattagtt 
001141 cactagtcaa tacattcttt gggcgagttg gcctgcattt gtggaataac aaaaaggcct 
001201 tctacactga atatttttct tcataccaag ttcttctcaa aacttaaccc aagcattctc 
001261 attttgttta ataaatgtaa atatgtattg acaggtcatt gggcatgtgc aagaagtgcg 
001321 gtgatcttcg tattgtggct tgctcacaat gcaaaggagt aggttctgtt aggaaaggag 
001381 gactattcac atttggcatg ctagatgata tttatgaatc acttggagct gaaacaaaga 
001441 caagtaactt ggttccttgc acaaattgcc gttctaaagg ccgccttttg tgtccagagt 
001501 gctccaaggt taggtgattc agttctggtg atgtacagag atacaatttt ctatcaccac 
001561 acatgtaggt gttgtttcag aactgtggtt taagatatac tatatcatct tcatcaaaga 
001621 attatggcat gtactgaact aaggatgctt attccatttt cttttacaat ttgattgaaa 
001681 gaattaagcc atatt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ662920 whkp14j07 690
more... (Total Hit Count: 2 )
/rice/oryzabase