cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK066661     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0165200 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 3,361,062 -  3,366,658  ( - );   5,597(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3,361,062 -  3,361,549 ( - );   488 (bp)
Exon 2 Location 3,361,660 -  3,361,846 ( - );   187 (bp)
Exon 3 Location 3,362,038 -  3,362,139 ( - );   102 (bp)
Exon 4 Location 3,362,230 -  3,362,306 ( - );   77 (bp)
Exon 5 Location 3,362,976 -  3,363,175 ( - );   200 (bp)
Exon 6 Location 3,363,253 -  3,363,595 ( - );   343 (bp)
Exon 7 Location 3,363,837 -  3,363,893 ( - );   57 (bp)
Exon 8 Location 3,364,011 -  3,364,727 ( - );   717 (bp)
Exon 9 Location 3,364,805 -  3,365,007 ( - );   203 (bp)
Exon 10 Location 3,365,171 -  3,365,298 ( - );   128 (bp)
Exon 11 Location 3,366,501 -  3,366,658 ( - );   158 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0165200 Os01t0165200-01 202101 J013070N02 1982 LOC_Os01g07140.1 AK066661 20361 AP008207.2 255672756 BAF04023.1 113531640 NC_008394.4 297598437 NM_001048644.1 115434701 NP_001042109.1 115434702
Os01g0165200 Os01t0165200-01 202101 J013070N02 1982 LOC_Os01g07140.2 AK066661 20361 AP008207.2 255672756 BAF04023.1 113531640 NC_008394.4 297598437 NM_001048644.1 115434701 NP_001042109.1 115434702


Chromosome: 1 ,  position: 3,361,062 - 3,366,658 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 acgcccaccc atccactcgc accccgcgcc gcaccaacac acgcagaggt ggtgaactgg 
000061 ttgatcgatg cttgctgctg ctgcgcgtcg aggcggctcc atcggcggca accgctgatc 
000121 gatcgatcga tcccgcgggt ttcgtagcac ccgagcaggt gagcgagcga gcgatcccct 
000181 cccgcgcggc cgcgcctcga tttggtcgcg attggtgctg gattttctct ctctctctct 
000241 ctctctctct acctttcctg tttcggtggg ggttttggtg gggttttgtg gctcgaggtg 
000301 gtcggggatt tctggggtga tgggagaggg gctcgcgtgg tggtggattg ttcgctggaa 
000361 tggcggggaa tgctgtgccg tttgggggat tgatgccatg gtgatgggtc gaaatgctgg 
000421 atggggttga gtttgttcaa gtggttttga attggaatct gtggagtttg gggggaaatg 
000481 gggaatgggg cttcgagtgc gcaaaggttt tgcatgtgcg gaattgcagc tcgaggtttt 
000541 cgctggattt aggcgtagct tctgtgcgcg tgtttgttta gcgattttag cagttcgtgg 
000601 gctggtgccg ccgcgtgttt gaatggttta gcgctttatt taccgttaca gttgatgtct 
000661 gcggtttttc tggtgattta tgccagtttt tagaggtgaa tcgctgtgtt ttgggggaat 
000721 tctagagccc agggttgggt ttatgggggc gagattttag ctgttggatt ttaatcctat 
000781 attgcgagaa gcatgggaga actgcgatcc gtcgtcagag gtgaacgctt tcgaactctg 
000841 atggttttaa tgtggcagat attgtgaagc ttatggtagc ttcgttaact tgatcgacgt 
000901 ttttacttgt gctgctcgtg cgttgtggta gatttggctt gtgagagagc aggtggatgg 
000961 ggtagattca gattacagag tggtttactg catgtagcga tgtgtttgag ttgtaacttg 
001021 tgaggctgta agattaaaat gttggcatgc gtggggtttt tgggggtaat attttgtttt 
001081 gtttttgttt ttgttttttg ctagtgtttt gacccaatcc atctccccca tcttttttta 
001141 gtggaaaacc gctccctgtt ggtactactc aagtaaactt accagaatta caatcctcca 
001201 acaaaggaat aataccctgt gctgtttgtt gtgacaactt atctgtacat gatattgcta 
001261 gtttgctact gcagtatacc tacatgctca cttatgtttg tttcttttag ataatgtcac 
001321 ttatgtttgt gttttgcata atgttgataa tttctcgaag aatgggtgct ggaaagaaga 
001381 ctcagaccga gaacgagttc cgtgagctcc cggaaaagga gctaggaggg gtggtctttt 
001441 gttgcaataa caacacattc gatgaatgct tcactaaaca gttatttggt tagtaaaagt 
001501 cccttttcgc ctgtcctaat ttcatctaaa tgatatgtaa aatccatacg cgtgtgatta 
001561 cttttattca agaacattga cattgctaat caacattctt ttgaacttct cgtttaattg 
001621 ggaatccatt cgtttgcctt ttgtttgata ggtttgcctc aacgcaatat cttgtatgtg 
001681 aagaatgtta aacctggctt gcctctcttt ctgttcaatt atagtaacag acaattgcat 
001741 ggcattttca aggctacaag cactggccag cttaatatcg accgatttgc ttggatgtct 
001801 gaacagtcta atgatgcaaa gacaaatgca aagacaacac catttcctgc acaggtataa 
001861 tagaaacaac atatactggt ctttgttctg gttatagttt cataagcatt gtgagtattt 
001921 gtgttcttca ggtccgcttc tctaccagga cagagtgccc tccacttcca gaaagcaaat 
001981 acaaaagtgt aatcataaac aattatcgca aggataaacc tagccacttc cgttttgagc 
002041 tagaccatcg acaaacaaga gatttgattt ctttgtttct acctgctcct gttcgcgcta 
002101 atcaaaacaa acttagtatt ccaaaacctc ctgctaccgc tcatactgtt ccaaatccat 
002161 ggaatcgacc tctgccattt cttacagcaa aagcacctgt tgtttctgat aaagtgaaga 
002221 gtgaatccaa tgtgaaggat gtggatcagt tcaatgtttc atcacactca catgatattg 
002281 ttcctcatac cttgcctgat gtagaagtcg accttgctag cacaagtaca acatcaagga 
002341 gcaaccttaa caaagatgct tctggctgtg atgacctggt tgctggtttg atcaaggaag 
002401 ataaagaatc tgtggatgat gaccagcatg ctaaaatgga tttaccagta aagctgcaag 
002461 agctgtcttc tttacaacag aaggaagcca atttcttgga ggatgctcct gtttctactt 
002521 cagctcaaag catacgtcaa gatacacggt ttgctgctac tctccccaaa gattcattta 
002581 atgccacatc tcaatgtgac acatcattga aagatacatc ctttgtgcaa tgccatgaat 
002641 atgctgaggt gccttaagct attccatccc ttattaccat tttcccttac gcaccatatt 
002701 tcagtgctac aacttatata ttttggtgcg atgtttatgg cctgcttttt ggcatttgtc 
002761 tgtagctgta tcaaattatc aatgatttat ccaagaagac cgaagaaatg gaaaagatga 
002821 aggtactttt cttcttgctt aaaatcagta ggatcttctc ttttaaagaa gaaaaggtat 
002881 aaatagatga acccgttttc ctaattggtt ttatctcttg tcagtatgtc tggttttgtg 
002941 ggttttaaac catgttcaaa ttttaaccgg aaaaccaaac tagtatatat gtgtttgata 
003001 ttgagttaat tacgctgttc aagtgtgcaa actccgatct tgattatggt ttgaacgttc 
003061 taggttgatt cagatcaaga aattttgttg ttgaagaaat tggtaaaggt tatggaaaga 
003121 aaagttgaac atctggaaca gcagcttgag aaatcgcata gctcttcagc accactcttc 
003181 ggtgtaacaa atgatgatgt agaagggcca tcaatactcc taacaggtgg ccataatggc 
003241 attaactggc tgtcatccct tgattcatat tgccctgcaa cggacatact agaaactcta 
003301 atgccaatga gctcagcccg tgcatatgcg gctgttgcca cattaaagga ccatgtcttc 
003361 atttttggtg gttggaatgg cattcgcagt ttgtggtaca acacaggtaa acattcttca 
003421 atatgccaaa cgtagtgctc tatataagca agctgttgac catctgcatt tgttttattg 
003481 cagtggagtg ctacaacagg ggagccaata agtggatagg attgccctgc ttgaatcatg 
003541 agaaagggca tcttgctgga gctaccttga atggtaaaat atttgctatt ggtgggggtg 
003601 atgggtctca gtctttttca gaagtagaga tgtttgatcc agcagtgggg aaatggatat 
003661 acagtttgtc catgcagcaa cctgtatggt tctacttcta ctcccttata acacttgtat 
003721 agagtagaat gtaccagcct ttttggccaa tttaataggg tcctggtctt cgctatgttc 
003781 tcactgtgat tttcttgata aggctcaaga tttattagat ggcccaggaa aaaaacatgt 
003841 tgtgaagaga ggctgtttga actgcatttc ctataatcac ttacatcttt gggttcttaa 
003901 tcttttacaa gatgaatagt gctgctcaca gaacagtttc tactattatt tcaatcattt 
003961 cttacgtgtc gtaaatcagt aaaaaagttt gttctcgtgg tgaactatgc tgagtgattt 
004021 agaatttaga tagctgtttg agcagtagtg ggcaagctga ctgtgagttg gacattcgct 
004081 tgagcactag tcttacaggg ttggttggac catttgcaaa tctaatctaa gctacatttt 
004141 gagcacttga ataggcaata aatatttttc aaattcaggc tatttcaaat tatggaatgc 
004201 aaattgcaat tcatgtaatt tcatgggatt tatgaggcat atacattgta actttccagt 
004261 tcaccttgca tgaaatatta tcccatattt ttaatgtatt tttatttttg accaatatac 
004321 ccacctcacc aacatgtatt ttattgttcc agcgatgtgc tcctgctgcg gctgaattaa 
004381 atggcgttct ctatgtaatt ggtggttatg atggcaacat gtacttacag ttacgatcca 
004441 ccctcaccat tctctccatg ctttacttga ttttgattct gagaccttcc tattgaatga 
004501 ttgatcctca tatgcacagg tcagcagaaa ggtatgatcc aagggaaggc ttctggaccc 
004561 aacttccacg tatgcggaca agaagaggat cccattcagt agttgtcttg ggggattcac 
004621 tgtgagtttc gctcgcttta tctgtgtgtg taatcaacag agaggtcatg tgatttcaaa 
004681 aaaacacaca cacagattcc acctggcagt tagatgctac tattagcctt atatcactat 
004741 cttttatttg acgtctcgat ataaacctga taatatacga cttaacatcc aacatgggaa 
004801 tttcattttc agacatgctc tgggtggcct gaatagaaat accacgtttt ccagcgtaga 
004861 gatttttgac acccgtgcca actcatggag aagggggagc ccactcagcg tcccaagagc 
004921 acacggatgt gcggttacat tggacggcaa cgcatacctc attggtggta tccaaagcag 
004981 tgaagaatac gttgaaactg tgagttcttt cccaagatca ctctctccat catccattgc 
005041 tgttgcttca actcgccgaa ctctcacatc cttctctcgt tttattttgt tttgtttttt 
005101 atttcacagg ttgaggttta caaggagggc caaggctggt ccatctctgg ttccaaggca 
005161 ttcgggaaga gagctttcgc atgcgccgtt gccatttgac aggattgcag aagtgcagat 
005221 gaacccccgg gccggttttg tacagcacca gtccccaacc ccgcctcaca gtattacctt 
005281 ctctcaagcg aaatattgcc gctcattgct gagcactgac gcctgacggc ccatccattc 
005341 tgtgcatccc agtcatacgg tttttacatt ttagaaacaa caccgtagcg agttctggta 
005401 tgcgttaact ctgcccgttg ttgtttctca ctgaagatag gtgttgttgg ttgtcacctg 
005461 attgtagcgg agcaaactga actgtctaca ggacactagt tacttagaga agttcgaatg 
005521 aacaaacttt agctggtgat agcagtacat atgggaggct tggaagctgg tataattttt 
005581 gatttttttt ttgaagc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
BJ270368 whoh7f02 651
more... (Total Hit Count: 3 )
/rice/oryzabase