cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK099864     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0351100 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 13,201,046 -  13,203,504  ( + ) ;   2,459(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 13,201,046 -  13,201,768 ( + ) ;   723 (bp)
Exon 2 Location 13,201,890 -  13,202,120 ( + ) ;   231 (bp)
Exon 3 Location 13,202,767 -  13,203,056 ( + ) ;   290 (bp)
Exon 4 Location 13,203,179 -  13,203,504 ( + ) ;   326 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 RNA Nucleotide
Accession No		 RNA
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0351100 Os03t0351100-02 210700 J013111C11 13519 LOC_Os03g22770.1 AK099864 30967 AK099864.1 32985073 BAG94327.1 215704699 NC_008396.2 297602023 NM_001056649.1 115453026 NP_001050114.1 115453027
Os03g0351100 Os03t0351100-02 210700 J013111C11 13519 LOC_Os03g22770.2 AK099864 30967 AK099864.1 32985073 BAG94327.1 215704699 NC_008396.2 297602023 NM_001056649.1 115453026 NP_001050114.1 115453027


Chromosome: 3 ,  position: 13,201,046 - 13,203,504 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atctctctcg tcatcttcta ctctccctcc tctagtcctc ttcttcttct actttgtacg 
000061 cgccactcac tctccgagct tgacggcggc ggcggcggcg gaggtcgtcg agtggtggtc 
000121 ggggagatgg gtcaagatga ggtggaggta ggtgcggaga agaaggatca agaactaccg 
000181 gaggtggagg tggtcgagga ggaggaggag gagggatcca agaaggcggc ggcgggctgc 
000241 gactactgcg gcgacgcggc ggcggtggtg tattgcaggg ccgacgcggc gaggctctgc 
000301 ctgccatgcg accgccacgt gcacggcgcc aacggggtgt gctcccgcca cgcgcgcgcg 
000361 ccgctctgcg ccgcgtgcgc cgccgcgggg gccgtcttcc gccggggcgc gggcggcttc 
000421 ctctgctcca actgcgactt ctccaggcac cgccacggcg gggagcgcga cccggcggcg 
000481 ccgctccacg accgctccac ggtgcacccg tacaccgggt gcccctccgc gctcgacctc 
000541 gccgcgctcc tcgggatctc ctactccgac aaggcggcgg cggcgaccgc ggcggcgggg 
000601 ggcgacgacg gtgggtggtg ggccatctgg gaggagcccc aggtgctcag cctcgaggat 
000661 ctcatcgtcc cgaccacctc ctgccatgga ttcgagcctc tcctcacgcc atcttccccc 
000721 aaggttcgct tttacagcct tctactgttc actgtccgaa aaaaaaaaat cccccccttt 
000781 tctgaatcaa cttctattta atttactccc atttatccgg cttaattctt gtctgctgca 
000841 aaagattcag aactcgccgg atgggaaggt gaatgaggag gtcatacgac agctaaccga 
000901 gctcgccaat tcagacggcg gcggcgcgca gatttgggct catcgcgagg cggcgcaggc 
000961 cggcgatcat cagttacctt catggggaac aacaacacaa cacaacactg gacatggcaa 
001021 tttcggtact gcaaacagca atgaggttgc aaccatgccg acgcctggtt atgaggtttg 
001081 atctacaatc ttcagcatat ctgactaatt tgcagtgctg tttaccctat ggatgtactt 
001141 ttgtcactgc aattgttagt caagcgataa atggtactag attggtagtg tccgcagaat 
001201 cttcgtctga acggtagaaa ctatacagat tctgtatcat atgcggtgaa gatattccta 
001261 ggcatgcttt gctgtaccta tgttgatggg gaatttattc tgtagtgtca actcaagcgc 
001321 tagcaactca agatacatct gagtcagaat aaagtcattc tagtgaagaa cccctaaatt 
001381 ctctttctct ttttcagaga gaagaagccc caaatttgat atgattctgt tcttttccta 
001441 tctattgtca tattcgtgat tttgtgtaag attcttattt ggtttacacc tactgacaca 
001501 tacattaatt ttttaaacct ggacaaggat accattctac ccattgatta tttattgaca 
001561 gtcctgttca gataggggga attgtatcca cactgaaatt ggccatgaaa aacgcagagt 
001621 aggcctagtt gataaagagc taagattttg attgtcagtt cttttgcgca aaatagatgc 
001681 ttacttggct atctattaat ataactttat ctatatggca gaatggtgga tgggataaca 
001741 gcgattaccc tgcgctaaat gatccgtgca aggtcgagtt cacatatgag caacctccag 
001801 ccagctcagc tgaagcatgt atttcatcat ttgttcagat gtctgaactt tgccccagca 
001861 tgagcaatgg tagcagcatg gaggaaaccc accagacaaa ccctggaaat ggcacgccaa 
001921 tgcaagttct acccaaaatg ccagaatttg ttccttgccc cgacaggaac ttggtcattt 
001981 ctcgctataa agagaagagg aagacaagaa ggtgacataa gcttatggca agcatgatgt 
002041 ttttatttcc tcttgaagct tctcttggac tcttacccag gatttttcga tttgaaacat 
002101 aactgtgtga caatgaaatt ctaattattg cagattcgac aggcaggtcc ggtatgagtc 
002161 ccgcaaagct cgtgctgata gcaggctgag gattaagggc cgttttgcta aagtcaatca 
002221 gatttgagcc ttcatttctg taatatattt tgcatcttgg acatgagtaa tactaattag 
002281 gaccaagcag atatagtaca agaaaaaata tcagcatttt gtatgtaact atgtacccac 
002341 ccagtggcta cgccacgctg aggagaattt agtttcatcg aatctctgta tatagtgttg 
002401 catcgaactc agtgatacta tttacatgca aaggatattg tcattatggc tgtttcccc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY868658 rbart43g08 511
more... (Total Hit Count: 2 )
Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ830851 whatlal33i03 242 view details
/rice/oryzabase