cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK099497     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0161800 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 3,337,347 -  3,340,032  ( + ) ;   2,686(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 3,337,347 -  3,337,426 ( + ) ;   80 (bp)
Exon 2 Location 3,338,368 -  3,338,479 ( + ) ;   112 (bp)
Exon 3 Location 3,338,600 -  3,338,694 ( + ) ;   95 (bp)
Exon 4 Location 3,338,768 -  3,338,882 ( + ) ;   115 (bp)
Exon 5 Location 3,339,002 -  3,339,126 ( + ) ;   125 (bp)
Exon 6 Location 3,339,356 -  3,339,426 ( + ) ;   71 (bp)
Exon 7 Location 3,339,519 -  3,340,032 ( + ) ;   514 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os03g0161800 Os03t0161800-01 J013027P03 210331 J013027P03 9368 LOC_Os03g06620.1 AK099497 35854 AP008209.2 255674134 BAF10960.1 113547517 NC_008396.2 297602023 NM_001055581.1 115450890 NP_001049046.1 115450891 Q10RE5 ARD2_ORYSJ


Chromosome: 3 ,  position: 3,337,347 - 3,340,032 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ggagggtttc ccaataggaa agcaactcag gactcaggag cggcgtctga gaggtttcag 
000061 agatggagaa ccagttccag gtgagatctc tgtaccctaa tccttttctc ctgctcttgt 
000121 ttgtgtcctg accgacctgg gatgccgagg acatgttgcg ccaagaaaag cttcctttct 
000181 ttcccgggca tgtttcgtct aggttttctt gatcttgttt agggttcgtg ttgaataggc 
000241 ggaagttgta catgcgaaat tggaggcggt attatgggat tgcgaatctc ctccggaaaa 
000301 ttgatttagc tgctttggat gattggcttt gggggtgaaa ctgtgcttgt aaaatctcag 
000361 atcagattag gcggtcaatt attcgatttg ctggtgggtt tggtactcga gagcacccca 
000421 aagttgggag ctttggtata tgtagcatgg aacttgctat ccagtcctca acatggtgtt 
000481 ctagtcctgt ttgagaataa tctaaaggtt ggagttaaac agtacgggat atctgatatt 
000541 ttaaatggta caacatagag tttagaggtc cttatttatt gaagaaatgt ttccactatc 
000601 accatcatgt ctagatcacc cccacttcaa taccgttgct ctgttgatac tagaactcta 
000661 gaagtattga ggccccttaa aggcttcaag cttgctgtca cttggttgac ctgatgcagt 
000721 cttattatat aactaattac ttcatttata atggtttttc catttttttt gcatccactt 
000781 gctttggagc atttgttggg aggttctttt cctaaggata tctgtgtcct gtcaaccagt 
000841 cctggagcat tactagaatt gcatggattt catcacttct gtttgttttt gcattcctta 
000901 gtcttatgaa tgagatgacc tgatacaacg taaattatgt tagatgttta aactagacct 
000961 cagatagtgg gttatacctg tttctacttg ttctgaagta tgttgtccat tgctaattta 
001021 ggatggcaag gaggaggtca tcgaagcttg gtacatggat gacagtgaag aggaccagag 
001081 gcttcctcat catcgtgagc ccaaagaatt cattcctctt agcaaacttt caggtttgtg 
001141 catctattgc tcaaacaata tgtttagctt ttgtaactaa ctcttagtag aactagtgcc 
001201 aaattgccaa aaaacttgcc agatgttaat gtggtgcaca attgatacac cagagttagg 
001261 aatattaagc tggcgcctga atgctgatga ctgggagaat gatgagaacc tcaagaaaat 
001321 ccgtgaggcc aggggatact cttacatggt ttgcatttca gaacttgttg tgagtttcca 
001381 ttttttttgt tcgcaaggtt aatatgcttt tccttgtgca ggatatttgt gatgtgtgtc 
001441 cagaaaagct gccaaactat gaggctaagc tgaaaaattt ctttgaagaa cacttgcata 
001501 ctgatgaaga gatacgctat tgtcttgagg gaagtggtat gcatctttat tatactagtt 
001561 gagcacttga taactagtaa taacttgctt ccagcaataa tcatggtggc atgttttgtg 
001621 gttgtcacat acttcttttt ctcatgctcc tctaggatac ttcgatgtca gggaccaaaa 
001681 tgatcagtgg atccgtgtag cagtgaagaa agggggcatg attgttttgc ctgcgggaat 
001741 gtatcaccgc ttcacattgg acagtgacaa ctacatcaag gtatcttttg ctttgttcct 
001801 ttgttcccac aaatagttat gttataagca tcaaactgac tttgacgtga acttatgcgt 
001861 tttaagtata ttggtgaaca gcggtcacca tttttctgtc atttacttaa gtaatctgtt 
001921 catttcctaa acctatgttc catttctatg ctcttatcaa ataaggaaca tcagtccaat 
001981 atggtttttt ccttactatg cttctgcagg caatgcggct ctttgtggga gagcctgtct 
002041 ggacgccgta caaccgtccc catgaccatc tgccagctag gtatctgttc tttctgttcc 
002101 ttgttttcct ctttatctct ggcttatttt tccggttatt gttgactcag tggaggtttt 
002161 gcataatttc agaaaggagt atgtcgaaaa aattatcaac aggggtggaa ctcaagctgt 
002221 cgaagctcgt taaaggcata tcaagatgtg cttcctagtt cggtgttctg ttacactcta 
002281 cagatactga ataaactgtg ctatcagctg ttgcaatggg ctcctaccga catcttacat 
002341 catttggcag tattttgcac aaacccgctt aaaatctccc tgaaaatacg cacgtcacca 
002401 tgtcagagtg tttatataca ataatgacac ttcagtccac agtcagcaag ggactaatga 
002461 caatcattgt acttgtggtg tgtgtgatga aaccacaatg atcaaaccga gtgtctgaat 
002521 ctctgaattg ttttttttag cacaatgatt gtgtaccaaa ccctctgttg ctgtgtgcgg 
002581 tggctggctc acctgatggc ctttgtgcta ctcctgtcgt cttcaaagta tctgacggtg 
002641 ctgaccaaaa tctttgaaat gatagtgcta atgctgttga ttaccg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ471108 baal30m11 642
more... (Total Hit Count: 24 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ640568 whec20f14 649
more... (Total Hit Count: 198 )
/rice/oryzabase