cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK073032     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0133400 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 1,877,909 -  1,880,707  ( + ) ;   2,799(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 1,877,909 -  1,878,661 ( + ) ;   753 (bp)
Exon 2 Location 1,879,767 -  1,879,887 ( + ) ;   121 (bp)
Exon 3 Location 1,879,980 -  1,880,167 ( + ) ;   188 (bp)
Exon 4 Location 1,880,259 -  1,880,707 ( + ) ;   449 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os03g0133400 Os03t0133400-01 209110 J023146H06 11194 LOC_Os03g04110.1 AK073032 20158 AP008209.2 255674134 BAF10789.1 113547346 NC_008396.2 297602023 NM_001055410.1 115450548 NP_001048875.1 115450549 Q8H8C7 CEBIP_ORYSJ
Os03g0133400 Os03t0133400-01 209110 J023146H06 11194 LOC_Os03g04110.2 AK073032 20158 AP008209.2 255674134 BAF10789.1 113547346 NC_008396.2 297602023 NM_001055410.1 115450548 NP_001048875.1 115450549 Q8H8C7 CEBIP_ORYSJ


Chromosome: 3 ,  position: 1,877,909 - 1,880,707 bp

   Now loading


#
#
Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atactcctcc tgctccagtg tcaacacgac agtcaaacaa acaccaagcc tctcattccc 
000061 acctctcgag gagagctttc cccaccatgg cgtcgctcac cgccgccctg gccacgccgg 
000121 cggccgctgc cctcctcctc ctcgtcctcc tcgccgcccc cgcctccgcc gccaacttca 
000181 cctgcgcggt ggcttcaggc accacctgca agtccgccat cctctacacc tcccccaacg 
000241 ccaccaccta cggcaacctc gtcgcccgct tcaacaccac caccctcccc gacctcctcg 
000301 gcgccaacgg cctccccgac ggcacgcttt cctccgcccc cgtcgccgcc aattccaccg 
000361 tcaaaatccc cttccgctgc cgctgcaacg gcgacgtcgg ccagtcggac cgcctcccca 
000421 tctacgtcgt gcagccgcag gacgggctcg acgccatcgc gcgcaacgtg ttcaacgcct 
000481 tcgtcaccta ccaggagatc gccgccgcga acaacatccc cgaccccaac aagataaatg 
000541 tcagccagac gctgtggatt ccgctgccct gcagctgcga caaggaggaa ggctctaacg 
000601 tgatgcacct cgcctacagc gtcggcaaag gggagaacac gtcggcgatc gctgccaagt 
000661 acggggtgac ggagtccacg cttctcacca gaaataagat cgacgacccc acgaaattgc 
000721 agatgggaca gattctagat gtcccgctcc ctggtacgtg ccttgctgtt actgtttagt 
000781 atggttcttg caatcttgtg atcgagctca gaagtttttt gtttaacagt gaattttctc 
000841 agtagactag tcttactagt actataagag aagaaacttg aattagttag gcaggtgttt 
000901 agttcacttc aaactttcta aaattccatc acatcaaatg tttggatata tgcatggagc 
000961 attaaatatg gacaaaaaaa aaaccaattg cacagtttgc atgtaaattg cgagacgaat 
001021 cttttgagtc taattacgcc atgatttgac aatctgatgc tataataaac atttgctaat 
001081 gacggattaa ttaggtttaa taaattcgtc tcgcagttta tatacggaat ctatactttg 
001141 ttttgttatt agtctacgtt taatacttca aatgtgtgtc cgtatacttc aagaaaattt 
001201 tagcacacga actaaacacg gccttactcg tattactacc tctacatggt tgactgggga 
001261 gactgaagat tagctgtgtt gttctgttag tttgcatatt aaacttaggt taggtatggt 
001321 aaattatttg caatatgctg ataatatatt gctcggattc agtggtattt gcaatgaact 
001381 taggctatgg tccccttgca tgatggagtt tatcagaatc aaaatatctg gttgtgactc 
001441 ggaaagttgc tctcaagaaa agatagctag ctgcacatgc ttcgatcgtt gagagattga 
001501 gacaacatga cacatagctc cactagcaca tgagtagaaa gccacaaaat tccatcgcaa 
001561 tgttgaggaa tttaagcttt agagcttgaa ttcctgcact ctttggactt gtataattag 
001621 ttagccgttg ctatcaccgg acaaactatc tgactttgtg gtttaaaatt acggaataaa 
001681 ctaccaatac caatccacaa agttgaccct cgctactcac aaggtttcaa aatatactat 
001741 tatagtacta tcttagatgg atcttgatgt ttactactat tcactttctt cggtaagaat 
001801 gtcatatgaa acgagttcct agacctagta ctaacttctg gaaaactggt gtcctcagtg 
001861 tgccgttcat caatcagcga tacctcagct gatcacaatc tgatgctcct cccggatggc 
001921 acctatggat tcaccgcagg aaactgcatc cgctgcagct gcagttcaac tacctaccag 
001981 tatgctcccc tattatttcc atctccttct aagttgtttc tgatcaagca gtaaccaaag 
002041 aatttacatt tcttttcact gtgtcaacca ggctaaactg cactgcagta cagaacaagg 
002101 gatgcccgtc agtgccactg tgcaatggaa cgctgaagct tggtgagacg aacggcaccg 
002161 gttgcggatc aacaacgtgc gcctacagtg gttactccaa cagttcatcg ctcatcatac 
002221 aaaccagcct tgcaactaat cagacaacag cctgccagag taagttgagc ccgcaaacct 
002281 gtacaaactc agagtctctg agtttgtttg agttaaagaa acggcaggtt tctaatagtt 
002341 gattttgcag gaggaggatc tgggaggtcg cagttcgcta ggtccatgtg gagcatgtct 
002401 gttatctcct tccacatggt gttgatcatt atctgtttcc tttgatgttg gagactactg 
002461 caactctaga tggtacattt caaagagttc tctacgatct atgattgttg tatacgatat 
002521 atgattgttg tcgtaactta gattttgatg actggtttat ccagctttga aatttgagtt 
002581 ttgactctgt tctttagagg atgagtggca cttgtacggc tgcttgaata aaacgtcgat 
002641 gtattgtatt cgatctgcat ctgaaaagga atattcatta gataggatta ttcgaaataa 
002701 aaagatccca catgtttttg ttataggcgt tacatgttct ggatggatat ataatgtacc 
002761 atgcggaagt atgaatggac ttcccacctt ccaatcttc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
AV941751 bah36h22 617 view details
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ854071 whsctal2h01 674
more... (Total Hit Count: 2 )
/rice/oryzabase