cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK072571     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0224700 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 6,585,571 -  6,589,379  ( + ) ;   3,809(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 6,585,571 -  6,586,058 ( + ) ;   488 (bp)
Exon 2 Location 6,587,290 -  6,588,175 ( + ) ;   886 (bp)
Exon 3 Location 6,588,652 -  6,588,709 ( + ) ;   58 (bp)
Exon 4 Location 6,589,109 -  6,589,379 ( + ) ;   271 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os03g0224700 Os03t0224700-01 208596 J023131M03 10861 LOC_Os03g12370.1 AK072571 43917 AP008209.2 255674134 BAF11343.1 113547900 NC_008396.2 297602023 NM_001055964.1 115451656 NP_001049429.1 115451657 Q10PR4 HSFA9_ORYSJ
Os03g0224700 Os03t0224700-01 208596 J023131M03 10861 LOC_Os03g12370.2 AK072571 43917 AP008209.2 255674134 BAF11343.1 113547900 NC_008396.2 297602023 NM_001055964.1 115451656 NP_001049429.1 115451657 Q10PR4 HSFA9_ORYSJ
Os03g0224700 Os03t0224700-01 208596 J023131M03 10861 LOC_Os03g12370.3 AK072571 43917 AP008209.2 255674134 BAF11343.1 113547900 NC_008396.2 297602023 NM_001055964.1 115451656 NP_001049429.1 115451657 Q10PR4 HSFA9_ORYSJ
Os03g0224700 Os03t0224700-01 208596 J023131M03 10861 LOC_Os03g12370.4 AK072571 43917 AP008209.2 255674134 BAF11343.1 113547900 NC_008396.2 297602023 NM_001055964.1 115451656 NP_001049429.1 115451657 Q10PR4 HSFA9_ORYSJ


Chromosome: 3 ,  position: 6,585,571 - 6,589,379 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 ctagtacacc agacgacaac acacacacaa aaaaaaaaaa gaagagaaaa accgaacgaa 
000061 aatcccctcg cgcagacgac tactacatcc ttctcgtctc atcccgtcga cccgccgccg 
000121 cctcaatctc gaagcctcgg cgaggctagg gtttctgcgt ctccatgggc tctaagaagc 
000181 ggtcgcctca gcatccggcc gccgcggcgc cccctcccgc cgtcggcggc ggcggcggcg 
000241 gcgaggtctc cggcgatggt ggcgcctcga cggcgaacgg gccggtggtg ccgaagccgt 
000301 cggaggtggc gccgttcctg acgaaggtgt acgacatggt ctcggacccc gcgaccgaca 
000361 acgttatctc gtgggccgag ggcggcggca gcttcgtgat ctgggactcg cacgccttcg 
000421 agcgcgacct ccacaggcac ttcaagcaca gcaatttcac cagcttcata cgccagctca 
000481 acacctatgt gagattccct tgatccctgt gttcgtttgt ttctgatgcg cgaattcggt 
000541 gccatttcca gttggttgga cgaaatcggt agtgaaatct gagtttctgt tcccaatttg 
000601 ttgtttatta tcacggctag acagcaaatc ttgcttgcaa ttataaattg ggcagtagct 
000661 tccgatgcac tgcatatgaa tttgtttgaa tcgtgactgc gtgttatatg atgttacttt 
000721 cttctatttt gtgcctttta agttgattgc gtgtattagg gattatctgc cattttggag 
000781 ttaatcactt attaaatttt aactacgttg gaagctgttg gcgatatagt tggatgcctt 
000841 tcttcttcta gtcgaaagac acaatagaac tagtttctgc ggtggctttc tattcaacaa 
000901 caacttctag agttctagta cataaaacac gtcattgggg gtggggacta atattgttaa 
000961 ttttgagacc agtttctgtt ctcttaatgt tttgtgaatt tgatcgtatg aaagctggct 
001021 gtagaaacta tgccaaactc ttggctttaa attacagggg aatgatatgt gttgcctatc 
001081 actacttcta aaagtctatt tcccccatat ttgtatttag tgaacttcag aactagagaa 
001141 agcatgatgt tataacctac catcatgctg tataagaaga atatgttccc tcttgtttgg 
001201 ctgaaagaaa tgcatgtttg gttgtgctga tattgtactg ctattatctt cttctgtgtc 
001261 atttgcctca atacattgtt ttatttgaat ttgaacttcc ttttcacaat cgaatttgtc 
001321 tgatgaaata taagattatg aatttgctct tttattgaac tatatggaca cttaattttg 
001381 tgcttttggc aaatccatgt cctcattttg atttctggat aaatcactgg actcttgcac 
001441 ccaggatttc ttctgatgtc taattactta aatgcgaaaa tcacctgact tttgctcact 
001501 gggttgcttt cctgtagtta ggagtagttc tatttaacca tctattagtt gttcttggct 
001561 tcatatactc agtaaaactt aaaaacaaag cctgaaaagt gaaatctcca atgggatcag 
001621 tagaaacatt actttatctg ctttcattga tgttctctat tcttttggag catatgtttt 
001681 atattagctg aagttactca agtttccttt cataatcagg gatttcgtaa agttcaccct 
001741 gatagatggg agtgggccaa tgaaggtttt attatgggcc aaaaacatct tctgaagacc 
001801 attaagagga ggaagaagtc ttctcaggaa tcacctagcg agatacagaa ggcgcctgtc 
001861 aaaactgcac ctggtactga aaatattgag ataggaaaat atggtggcct tgaaaaggag 
001921 gttgaaaccc ttaagaggga taaagctctt ctcatgcagc agcttgtaga tctcaggcac 
001981 taccagcaaa catctaacct tgaagtgcag aatttaattg aacggcttca agtaatggaa 
002041 cagaaccagc agcagatgat ggcacttcta gcaatcgttg tccagaatcc tagttttctc 
002101 aaccagcttg tgcagcaaca gcagcagcag cgcagatcca actggtggag tcctgatgga 
002161 agcaagaaaa ggagatttca tgctcttgag cagggccctg taactgatca ggagacctct 
002221 ggccgtgggg cacatattgt tgaatatctc ccacctgtcc cagaaacatc aggtcaagta 
002281 aatccagtgg aaggagccat ttgttcggcc aactcacaac cagttccaag tcctgcagtt 
002341 gccacaccca tggacatgca aacgtctaac gttgctgata ctctcggttc atctgaggag 
002401 cctttcgctg ataactctac tctacatgaa tgggatgata acgacatgca gcttctgttt 
002461 gatgataacc tagacccaat acttccacca tttgagaatg atggtcaaat gggccctcct 
002521 ttgagtgttc aagattatga ttttccgcag ttagagcagg attgtctgat ggaagcacaa 
002581 tataactcca acaatcctca atatggtaat gactaattac tgtataccct atgtttttgt 
002641 tcatcatttt gtggaaaaca agcgtgatgt cattttagtt aactgtggag tttctatgtg 
002701 catgtttcat gccaaatgcc aaacaatgga tgtttacaga ccaccctttt agtctgttgt 
002761 gctaggattt ggcaaagatg acatggagcc ttattcaaag ttcaatactt gcttctcaaa 
002821 tggctttgat atttccttct gttatttcac gaaagtagtg tttgacaact agagtgatat 
002881 ttttttttat atctggttaa ttggacaatt ttgatcacag ccaaacctct tgatttagtt 
002941 tcctcaacca aaacagatct aagctgtgcc tgcgtcacat tgattatttt cccaatcagc 
003001 ctattctttg tttgatcata tcggtttcaa ttcactctgc agtacttcta tacatgcctg 
003061 acatcttccc tttttcatca gctgatgtca ttaccgaagc ttgattggtg gtccaggagc 
003121 atacttgcag taacattagg tgggtacagt ccatttttaa catgaaaaag gaattattcc 
003181 ttaatgtgct ttgttaatgg aatgcttact ttgcgttgca ataccaaagt accaaactga 
003241 aagacatacc atccttgttt aattcctcta gccgttgttt cttacagaac tttaggctag 
003301 tatttcgtgt caggctagga ctatatggtc aactaaccct gcaaccgcct ccaaattgaa 
003361 attcaatcga aaaaatattg aacttaatgg cttgaactga atgcttacta aataaacatg 
003421 attggtcgtt aaaaaaatgc catcagccat ttcttgtaaa taaatacacg aagctatatt 
003481 ttttttattt gtatgaccaa tgtttgttcc agtactgatc cagtttcaac atctgcagtt 
003541 cttcggtgac caacctccgg gcgcatctgc accattggca tcccgaaatg gcgtcctcag 
003601 ggtgtaccga tgaattatgc taacacagaa gaagatataa ctctaatctg gttgaccata 
003661 cagaactacc tttcttgttc aaggcacttt ttggggacag gggacgcctt ttcgcagttc 
003721 tcgtcgtctt acactagcga tggttgctac catcgaattc atttggtgta tatactgttg 
003781 ttcgtcttat aaaacatgag cagttttgt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV941967 bah37k18 589
more... (Total Hit Count: 4 )
Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ854848 whsctal31b04 736 view details
/rice/oryzabase