cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK066316     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0733200 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 32,312,166 -  32,313,375  ( + ) ;   1,210(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 32,312,166 -  32,312,565 ( + ) ;   400 (bp)
Exon 2 Location 32,312,675 -  32,313,375 ( + ) ;   701 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os01g0733200 Os01t0733200-01 J013066G03 201735 J013066G03 1642 LOC_Os01g53220.1 AK066316 43503 AP008207.2 255672756 BAF06074.1 113533691 NC_008394.4 297598437 NM_001050695.1 115439760 NP_001044160.1 115439761 Q942D6 HFC1B_ORYSJ


Chromosome: 1 ,  position: 32,312,166 - 32,313,375 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcgcgctcac tccctccctt gcccccaccg acgaacggaa caaatcttag cgaggaaaaa 
000061 gcgagcgctt ttttcttatc ctgttccgcg ggcgcgctgc cacgaccgaa ccgggaggat 
000121 acttgcgaat tacacgatcg gttgtggcac tatgatgggc ggcgagtgca aggtccacca 
000181 gctccaggcc gccggcgacg ggggcccagg cgccgtcgcg ccgttcgtgg cgaagacgtt 
000241 ccacatggtg agcgacccgt cgacgaacgc cgtcgtgcgc tggggaggcg ccggcaacac 
000301 gttcctcgtg ctcgaccccg ccgccttctc cgacttcctc ctcccctcct acttcaagca 
000361 ccgcaacttc gccagcttcg tccggcagct caacacctac gtatgtatat gcgcctcctc 
000421 tgcttctgcc atctgtgcat agctctgtgt gtggcttcgt gtgtcgtcat ggttgtaact 
000481 ctttccgttg ctgctgtctt ctctctcagg gattccgcaa ggtggatccg gacaggtggg 
000541 agttcgcgca cgagtcgttc ctgcgggggc aggcgcagct gctgccgcgg atcgtgcgca 
000601 agaagaagaa gggcggggcg gcgccggggt gcagggagct gtgcgaggaa ggggaggagg 
000661 tgcggggcac catcgaggcg gtgcagcggc tgcgggagga gcagaggggc atggaggagg 
000721 agctccaggc catggaccag aggctgcgcg ccgccgagag ccgcccgggc cagatgatgg 
000781 cgttcctcgc caagctcgcc gacgaaccgg gcgtcgtgct gcgcgccatg ctcgccaaga 
000841 aggaggagct ggccgcggcc ggcaacaacg ggtccgatcc ctgcaagagg cggcggatcg 
000901 gggccgacac ggggcgcggc ggcgtggcga ccggcggcga cgcggccgag atggcgcaga 
000961 gcagaggcac cgtgccgttc ccgttctctg ttcttggcca agtgttctac tagccgcaac 
001021 agggccagat aggtgtacac gtacgcagtc ccccgttgta tatataacaa cagtgtaact 
001081 tcgcctcggt ttagttgcct actgttaagt tagtgtactt aagcataata ggagagtttg 
001141 gctaagtagc tatcgttgga tttgtgtgta tatatcgact atcgaggggc taataacgcc 
001201 tattttgttc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BY838837 baet22b03 483
more... (Total Hit Count: 6 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ536864 rwhei19n01 397
more... (Total Hit Count: 4 )
/rice/oryzabase