cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK070062     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0841800 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 36,284,505 -  36,290,530  ( - );   6,026(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 36,284,505 -  36,284,933 ( - );   429 (bp)
Exon 2 Location 36,285,266 -  36,285,368 ( - );   103 (bp)
Exon 3 Location 36,285,470 -  36,285,553 ( - );   84 (bp)
Exon 4 Location 36,285,867 -  36,285,962 ( - );   96 (bp)
Exon 5 Location 36,286,049 -  36,286,099 ( - );   51 (bp)
Exon 6 Location 36,286,168 -  36,286,308 ( - );   141 (bp)
Exon 7 Location 36,286,461 -  36,286,517 ( - );   57 (bp)
Exon 8 Location 36,287,452 -  36,287,526 ( - );   75 (bp)
Exon 9 Location 36,288,618 -  36,288,890 ( - );   273 (bp)
Exon 10 Location 36,288,971 -  36,289,030 ( - );   60 (bp)
Exon 11 Location 36,289,117 -  36,289,209 ( - );   93 (bp)
Exon 12 Location 36,289,559 -  36,289,833 ( - );   275 (bp)
Exon 13 Location 36,290,288 -  36,290,530 ( - );   243 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0841800 Os03t0841800-01 J023042K05 205830 J023042K05 5249 LOC_Os03g62500.1 AK070062 45168 AP008209.2 255674134 BAF13768.1 113550325 NC_008396.2 297602023 NM_001058389.1 115456506 NP_001051854.1 115456507


Chromosome: 3 ,  position: 36,284,505 - 36,290,530 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gcctattctt ttttaccaga aaaggaaaag tttggaagga gaagagcagc tgccctccac 
000061 tacctcactc cactctcccc ccctacctaa cctacttgct ccacaccaga gagagcccca 
000121 aaccatctca tctcatcctc ttccgattcc ctgctcgccc ataattattc caagagcact 
000181 ggagcctgtt gatctgcttg ctccaagaat ttttctttca tctctgtggg attttggctc 
000241 caggtactgt ggctccagat tctttgatcc caccagagag aaaaaaaagg gtcgtttttt 
000301 aatgctcctt cggacccggt ttgcggcggt ttggacccaa ttatcgagtt ataggatttg 
000361 ggatggatcg cacggtttat tttcggagga tctttgggcc atttttgaga ttgatctgtt 
000421 cgggatttag tgcaagtttt gcggtttttc ttgatgatta tttagtggcc cttcttgatc 
000481 gctgtgtggc tggaaatccg gatgcctttt ggagtagtgt actaacagac gaattatgtg 
000541 tttcgtactt gagtgcagtg tacttacttc ctgaagattt tttggatgtt cttcatcagt 
000601 tataaattga tgaagcaact tttacaagaa aaatttccta ctatgccata gaaggttcat 
000661 ctcgatcttg acacattttt atggaatgtg tatgcagctg ttgctgaagt gatgctggag 
000721 gaaacggcat tgcaatggcg ggctgatctt ctgcaagcaa tggagtgaat actggtctgt 
000781 ttttcttgtc ctgacctggg gaatctcggg tagtggggga tggcctattc tggactaagg 
000841 catggcggcg ttgggagctc ctctcggccg ggacatggat tcaagggccc ggctagttcg 
000901 gttgaatgtc taggaaggga gatgctggaa atgcaattga gggattccaa accagatgtt 
000961 ggtgatgaaa aggtaggttt ctgttcgtgt ttgtttgtca ctgagtgaac tagtgttgat 
001021 gtaggatgaa gagtcacctg tcaccagaat caaactcttg tttctgtggt tcctgttatt 
001081 ttgttcacct cctgtagcaa tgagccactg tgcctttctg agaaagtagt aaataatcac 
001141 tgcataactt caaaaaattt gtctgtaatt tgctactctg caaatttgac atgttgtcca 
001201 ccctagaaaa gcatggtttt atgacactgc ttcatacttc tacggctcat gaatattcac 
001261 agaaagccta cggaaatatg aaccaagact gcactttggt ttaccaacaa ttcatttgca 
001321 gaacactgaa cgagatgtag tcgacggctc tagcgctgaa gctggtcaca taatagctac 
001381 tacgatccgt ggccgaaatg gtctacctaa acaggtaaaa atagtttcgc tttcatcctt 
001441 gcaatttgtg atgtttggcc atgaaacaat gctgataaag tggttatggt aatggaacag 
001501 tctgtcactt atattgctga gcatgtggtc ggaactggtt cttttggggt tgtatatcag 
001561 gtaagcctgt ggctttttca ttgtaaaaat ttctctatgt gactgtgaaa ggcaaataac 
001621 ctgttcgtgt caactcttag gccaaatgtc gagaaacagg agaaattgtt gccattaaaa 
001681 aggttcttca agataaacgt tacaagaaca gggaattgca aattatgcat atgctggatc 
001741 atcctaatat tgttggtctt aagcattact tcttctcaac cactgaaagg gatgaacttt 
001801 acctcaatct tgtccttgag tatgttccag agacagtaaa ccgaattgcg agacagtaca 
001861 gcagaatgaa tcaacgggtg cccctcattt atgtcaaatt atacacttat caggtcagcc 
001921 ctgatttgtt gtctattttt ctgagtgact cgcctttgca ttggaccagt aacctttagg 
001981 aaataatata attttccatc tcatgcccca ttccaaaccg attgcttcta tagattcaag 
002041 agaataaact ctttggatgt ccggtcataa tctatttttg gttatcttat tttcgaggaa 
002101 caagggggca catttgcaaa gttcttaatt tttcagctgg gttatccagt gccttcgggc 
002161 atgcatgcca cactagagct tatcaatagt tgatgcatat ttttttcctg taaaatatca 
002221 atggaccatg ttcaaccatc tgcaagggag cactgagtgc cataattttt atgtaatgta 
002281 ggcattcatg ctctcccaat ttgtttgcat gttctaaaac ctgtcatgtg aagcatggtt 
002341 caaacttggt ggcagtcatg tgttgtcctt gtgtccactc gagtattatc ttcaagtagc 
002401 ccaggactgc actggaacgt ttagaagttt tggattaatg attcagattg atttcttcca 
002461 tggagaatcg gcatttaaac atctactcaa gccagcttgt caattttcct gacttcatat 
002521 gtatgttcaa cagcttgctt cttgtttgtc tagctaaaca tcaagcgcta tctacttatc 
002581 taataatttt tctgtcatat gatttgagat gatagtgaaa tataacattt ttcatgagat 
002641 aagtagcaca tcattttggc cggtaaaaaa attctgagat ttgattgcgt gacttcaatc 
002701 tactctctag gaaccagcag agatcattta ctgtttaact gaaaattttc acattagtgc 
002761 atgtaattgt ttatatactc ttaactaatg gttagattta tctatttact ccagttagaa 
002821 ttctagctaa tgagttgttc tatacacctg tttgctctct gtagctgttg aaataaattc 
002881 tcccaacatg cactaaaccg tgcttccagt tgtatttttc tttatgatat catatcttaa 
002941 gacaaaattt gattatttat taactactaa gtcatctaaa tcgttgttcc tgttgtcttt 
003001 gcagatatgc cgagcacttg cttacataca taactgtgtt ggcatctgcc accgtgatat 
003061 aaaaccacag aatgttcttg tgagatttta acccctttat tttctatgct taatatgttt 
003121 tgctgtacag atcctcaaat ataaattaat ggggatcatg gaaaataaaa cataactaat 
003181 tggtacatga aggagttgca tatatgtaac attgtctact tttaactata tgaaatattc 
003241 acagcaaact ctatatcctg tagagaaggt gcataatgtt ggtaataaag ctttgcattt 
003301 ttatgtatct gcatttccct gaaaatatta gtcataattc ataaatgaac ttgggcaatc 
003361 ttattttctc cttttgttcc attgagcttt catatgttta ctgttgcata tttctgaaga 
003421 gcataaagta tattgctcat tgggactgag attctggttc atatgtatcc aaatatctta 
003481 attattggtt ggttccacat acatgatata acattctgaa actgaaaaaa gcaatccaca 
003541 tgtgcattat ttagtttcct atagctgagc catcccatgt gcattgtttg gtgccaatgc 
003601 tacatgttat caacttatca tattatcaaa ctgtatgtta ctgtttatat tgttttgctt 
003661 gttgatgata ttggctgatg gaagagcact ttggttatac atagtcattt ttgttcttta 
003721 ttgaaagaga aaatatccat ggctccacat atttggattg catcaactac cactaggtcc 
003781 actactagga ctatgatgcc aaattatttg acatatagaa cagcaggatt taagattaag 
003841 tctcatatat aagattatta aaacggtata aactgcacat ataaaggaac atttatgcag 
003901 acaaactgtt agtacttcaa ttatttattt taaaaccgtg atcatgcatg tacttacaga 
003961 ctgaaattca ctaagttttg atggtactaa taaggtcttc cttcgcactg taggttaacc 
004021 cacatacaca ccagctcaaa atatgtgatt ttggcagtgc aaaagttttg gtaagttctg 
004081 aatttggcag aaatttaaat tcacaagcat ttctgttttc tgaatggaca cactgggttt 
004141 tcttgcaagg aaatgtgaac ttaggcaggt agcctacaca tgatagtctt aaattgcagc 
004201 tttttccccg ccgaatgtgc aggtcaaagg agagccaaat atctcctaca tatgctcaag 
004261 atattacagg gcaccagagc tcatatttgg tgcaactgaa tatactactg ccattgattt 
004321 gtggtctaca ggctgtgtca tggcagagct tctgcttgga caggtttcat tcatgcatac 
004381 aatattttgc ttttgttcaa tttcttattc taataacatt catccatgca gcctctgttc 
004441 cctggggaaa gtggagttga tcagctggtc gagattatca aggtaacatt tttctatgat 
004501 gtcctaaact gttctctcct gtgaccattg atcttgacaa taacatgttt agtcatagcg 
004561 ccttgcaggt tttgggtact ccaacaaggg aagagatcaa gtgcatgaat ccgaactaca 
004621 cggagttcaa attccctcaa attaaggctc atccatggca caaggtattc tgcccatcct 
004681 tgacaaaact aatgcaatat cgatgtccga tttggtacat acttttggga cagggagatc 
004741 ttttaacgca aattactatg ctgttaaatt ttgaaatatt tgttgaagac aaaaaggatt 
004801 aaaaaccaaa tggaaaagaa atccaatttc tgtgttacca tttgcgcttc gacattccta 
004861 ttagttgggt cctgcgtgtg tgagcaatgt ccatattatg tgtgtgttca attggaaaat 
004921 taaacaatac tttctcactg ttctttttgt aactcaaaag ttttgttttt tacccaggtt 
004981 ttccaaaaaa ggcttccacc tgaagcagtg gaccttgtaa gcaggtttct gcaatactca 
005041 ccaaatcttc ggtgcaccgc tgtaaggcca catgagattt tggttgttat gatggcctga 
005101 gcagcctgat gtggtatact gttagatttc tctctcatct aacctattta attattctcc 
005161 agatggaagc ctgcatgcac cctttctttg atgagttgag agatccaaac actcgtctac 
005221 ctaatgggcg tcctcttcct cctctcttca acttcagaac acaaggtatc atagctgaat 
005281 gaaacagcga taacagcata tgaaccttag catttgctga tttgattctc atcaacctaa 
005341 acattcctaa atctctctgc ctcgtctaac acctcatgta gacagtattt atgtgagctg 
005401 agagaattat ttcatgaatt atgttcaaaa tggtacctag catttaggtg aacaaactga 
005461 agccaatgct cgatcttcca cttcccgaaa tggcagaatt gttccgttaa ttgtttgttc 
005521 gcctcaatgt caaaatgaat cctgctgctt tgaatttatc ctcagctaaa ctgatacaac 
005581 atttgcaaca ttggcagagc taaatggcat ccctccagaa gccatcgaac gtctggttcc 
005641 cgagcatgcg agaaggcaga gtttgttcat ggcgctgcgc acctagttct ctagctcttc 
005701 ttttttcgca gtttttcttc ctgagggaag ctctgtaaag gtgtagtggc ttctatgtgc 
005761 ccatctcagt gtggataagg tctttggcta gagttgttgt tgttgttgtt catggcagga 
005821 tgtgatgtga gtgaggttgg agaagaagag gcttgtgctt tggtgtgctt gtgcagttgg 
005881 tttgaggttg gaatctatgc ttcagggttc caggctgtgt aactcctcca gttctctttg 
005941 gactttggtt tgaagattgt gtgcagtaac agtgcttggt tcaacttcag ttcagagtgg 
006001 tctggtgatg ataaagaaaa tcattc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AV913198 bags21d23 654
more... (Total Hit Count: 20 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ655466 whgc2e13 697
more... (Total Hit Count: 96 )
/rice/oryzabase