cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK068899     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0390200 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 16,175,104 -  16,179,420  ( - );   4,317(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 16,175,104 -  16,175,819 ( - );   716 (bp)
Exon 2 Location 16,175,943 -  16,176,041 ( - );   99 (bp)
Exon 3 Location 16,176,145 -  16,176,249 ( - );   105 (bp)
Exon 4 Location 16,176,353 -  16,176,445 ( - );   93 (bp)
Exon 5 Location 16,176,553 -  16,176,645 ( - );   93 (bp)
Exon 6 Location 16,176,730 -  16,176,783 ( - );   54 (bp)
Exon 7 Location 16,176,867 -  16,176,968 ( - );   102 (bp)
Exon 8 Location 16,178,036 -  16,178,110 ( - );   75 (bp)
Exon 9 Location 16,179,087 -  16,179,420 ( - );   334 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os03g0390200 Os03t0390200-01 J023001G01 204570 J023001G01 4129 LOC_Os03g27280.1 AK068899 14788 AP008209.2 255674134 BAF12188.1 113548745 NC_008396.2 297602023 NM_001056809.1 115453346 NP_001050274.1 115453347 Q75LR7 SAPK1_ORYSJ


Chromosome: 3 ,  position: 16,175,104 - 16,179,420 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 tcgatcacca ccaccacctc tcgctcatcc caatccccat cacgagcgcc ccagaatccc 
000061 tcccctccct cgtgcaccgc ctcccgtccc atccagctcc ttcttcttgg cgggcgagag 
000121 atcgatcgag ctggctgcgt gtgagcgagt tgccacgagc ggccaagaga ttaacggagg 
000181 gggcggacca gcggagcgag gtcgttgagg ggatatggag cggtacgagg tgatgaggga 
000241 catcgggtcc gggaacttcg gggtggccaa gctcgtccgc gacgtcgcca ccaaccacct 
000301 cttcgccgtc aagttcatcg agaggggact caaggtaaaa tgaaagcttc accctccaaa 
000361 cttttttctt tctttctttc tttctttttg ttatggtatg cacatcgact gtgcgatctg 
000421 tgctggctgt gagatgtttg ctccgttcgg ccggggcttg tctgaattgc tagagcaacg 
000481 ctgcttgaaa tgtttccttc acatttggag tcctgcaaaa atagccgaat tttcagcatc 
000541 cgggagaatc ggttagcgtt agttttgcag taggatttta catttgttcc cccatctttt 
000601 tagtgcagtt gattggttga agcttgcgca tttctttcta gattactttt agttgtaact 
000661 aatttgcttc tagagaagga atatatccca aaatgctggt accttttgtt aggccaaaag 
000721 gaacccaaga aaattggtca atccctttga ctatatttgg tccctgactc tctaacacct 
000781 gacgaactct tatcggtgac atttgcctca aggaagctag cagagccaaa ctgttctacg 
000841 catagtgatt ttttattttt atttttttgg cgtgaagcac tggctatgat gacataagtt 
000901 tcaatcaatt ttattactta tgtagcttgc tgtcttttat attcaaattt gtagctgctt 
000961 ttgatggcct tttctaagct cactttggca tttggtggat gtttctagcg ttttcgctag 
001021 cctttcatac atgtcactcg tcatttatta gttcattaat tgctctactg ttactgtgtg 
001081 ctatgctgtc cgtttcttgt tcttcttcct cgtttactgt cgaggtgctg tccattacta 
001141 tttcgggctg atgatatttt tgttgtattt tttgttctgt tcgagctgtt ttttttgtaa 
001201 tattaatctc tctgtaaaaa aaatggtact ctaataaggg cctttggtat ccatcattga 
001261 gcgtctttgg ttcattggtt aactccactt ttttttttat cgttgtgtag attgatgaac 
001321 atgttcaaag ggagattatg aaccaccgat cactgaagca tccaaacata atccggttca 
001381 aggaggtaat ctcttgggcc tctagggaag taatgtgtaa tataatctct agttgaattg 
001441 agtgttatga ttgtttctgc tcttttcggg aatttttttt tctactgata gaaagcgata 
001501 gttatctgta ttcttccacg cctctatgtt tataggagga cagatggaat atgtaacgtg 
001561 aaagtttagt tgcacattta ggaggactct tttgatggtg acttttatcg cttgaatgtc 
001621 actgttttca cccctgtttt gttctttttc tgttttgagt tctctttaac ttcgaatatg 
001681 ctgctcactt tagtgtgtat gatttgcatg aaccttgtac tttgtttttt ccacgggcag 
001741 actagtaggc taattgccta attgcataga ttcctttttg aaggaaaaaa aatcagggca 
001801 gtttttttac actctgcaca aatgaaaata gtagttattt ctaaaataac aaaaattagg 
001861 agttattatt ataaaaacaa gttatttaca aaagaaaagg agaagtgcat gaaagcaaaa 
001921 gttgctaatc tgctattttc agggaactaa atgtactagt gtctggcatt aattgttgag 
001981 tcatgttttt caggttaact ctgtcttact actgtctgtg ttctgtgtaa ctcagggaag 
002041 ttgattctta tttagattga caatgcgtat gtgtcctttt atgctgcctt ttactgtatc 
002101 gatgttgtta taaaaaattc ttttgtgggg agcacgcaaa agctttgcat ggcattccat 
002161 tagagaagag agttgaatac aacaagttgg cccaaggccc aaaacagacc tagaaagtct 
002221 taaattaggt gctaaaattt tcagggctat tttaggttct ttcgtcattt tttcttccaa 
002281 gatctgttga acagggtttt tagaataaag ctatccttgt gaatattgcg agcactttcc 
002341 gcagttcttt ctctgcattc atcgctgaac acatgtattt gactgtttga cgaggtttaa 
002401 cattcaaact tgtattgaga gttgaaaaat taaagtagtc cttagttttc aggtcgtgct 
002461 aactcccaca catttggcaa tagttatgga atatgctgct ggtggtgagc tatttgaaag 
002521 gatttgcaac gcagggagat tcagtgagga tgaggtagag aatattctcc acaatctttg 
002581 ggactcttat gcagatttat gtcattgcat tgacaaatta ttcattatcc tcatcaggca 
002641 aggttcttct tccaacagct gatttctgga gtgagctatt gtcattctat ggtacatgat 
002701 gtctagttga cttaaaaata tcaactcttt tgtagactat tgcccacatt tgtccttatc 
002761 tttttctgct tgcagcaagt atgccataga gatttgaaac tcgaaaatac tctcttggat 
002821 ggcagtgtca cacctcggct taagatttgt gattttggtt actccaaggt atgatttatg 
002881 cagatactat cctctgacat tcatgttttc tgttgcctaa aattagtacc cacctggcca 
002941 cccctccctt tgggcctttc ttttttaatt ttcagtcttc tgtcctgcac tctcaaccga 
003001 aatcaactgt tggcacaccg gcttacattg ctccagaggt cctctctaga aaggaatacg 
003061 atggaaaggt aattttgttc gcatgatttg ggatgagtct ctctatgatc ctaccaaata 
003121 gtcttaattt ccatgactgg actgttgaaa cataattact tcgaatctta ggtagctgat 
003181 gtttggtcat gtggggtaac actctatgtg atgcttgttg gtgcgtatcc ttttgaggac 
003241 cctgatgacc caaggaactt ccgcaagacg atcactgtga gtaaatccgg ccattgccca 
003301 tagcccccac tcctgttaat tcaaaatctg tctcaattct agtcagtctg atcatgtagc 
003361 ctattgacct cttttgcaga ggatactcag tgtacagtat tcaattccag actacgttcg 
003421 agtttcagcg gactgcagac atctcctgtc ccggattttc gttggaaatc ctgagcaggt 
003481 gactcctcgt catgaaataa ttcaccattt cacctagtag cttagtgatc aatctgcatt 
003541 ggctttccaa catggtgtca accgacaaac attcgtaaat tgcatgcatt tctctttgta 
003601 gaggataact atcccagaga tcaagaacca cccatggttc ctgaagaacc tgcccatcga 
003661 gatgaccgac gagtaccaga ggagcatgca gctggcggac atgaacacgc cgtcgcagag 
003721 cctggaggag gtcatggcga tcattcagga ggcccggaaa ccgggcgacg ccatgaagct 
003781 cgccggcgcc gggcaggtcg cctgcctggg gagcatggat ctcgacgaca tcgacgatat 
003841 cgacgacatt gacatcgaga acagcgggga cttcgtgtgc gccttgtgat cgatagatgc 
003901 caaattcgat cgatcgatca tcagctggtt gaagactgaa gtagcggggc agcgagcttt 
003961 ctttgtggct gatgtgttgc tgtcattcat gcctcgtttt tacttctggg atcacatatg 
004021 ctttgtgacc aagagattgc catcgctgtg gataaataag atgaatttaa ttgcatactt 
004081 agttatattc ttggcagagt gcttttgtgc tgctgattct gaattttagt tgtctgatca 
004141 tttcttcttt atgcaaatta ctatcgtctc tcgcaattga caaccagctt ggagcagatt 
004201 ctgttttact atcatctttg caccgcagag tatggacata tatcgagtgc acatttacat 
004261 atagggaatg cacttatatg tgtaagtaat aatacaatac tttggggttc atgtgtt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ464847 bags36e21 621
more... (Total Hit Count: 18 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ719169 whvd2n16 724
more... (Total Hit Count: 93 )
/rice/oryzabase