Update info.cDNA ( Data source : RAP-DB )
cDNA Detail
jump to Other species ESTs data to homologous Rice cDNA
| General information | |
|---|---|
| RAP - Accession No. | AK068765 Link to RAP-DB ( IRGSP 1.0 ) |
| RAP ID | Os03g0689300 ( IRGSP 1.0 ) |
| RAP - Chromosome No. | 3 |
| RAP - Location, Length | 28,321,140 - 28,328,275 ( + ) ; 7,136(bp) |
| Exon (Data source : RAP-DB) | ||
|---|---|---|
| Exon 1 | Location | 28,321,140 - 28,321,470 ( + ) ; 331 (bp) |
| Exon 2 | Location | 28,322,363 - 28,322,482 ( + ) ; 120 (bp) |
| Exon 3 | Location | 28,322,610 - 28,322,708 ( + ) ; 99 (bp) |
| Exon 4 | Location | 28,322,856 - 28,322,993 ( + ) ; 138 (bp) |
| Exon 5 | Location | 28,323,097 - 28,323,231 ( + ) ; 135 (bp) |
| Exon 6 | Location | 28,323,321 - 28,323,498 ( + ) ; 178 (bp) |
| Exon 7 | Location | 28,323,603 - 28,323,811 ( + ) ; 209 (bp) |
| Exon 8 | Location | 28,323,904 - 28,324,023 ( + ) ; 120 (bp) |
| Exon 9 | Location | 28,324,092 - 28,324,211 ( + ) ; 120 (bp) |
| Exon 10 | Location | 28,324,292 - 28,324,414 ( + ) ; 123 (bp) |
| Exon 11 | Location | 28,324,514 - 28,324,618 ( + ) ; 105 (bp) |
| Exon 12 | Location | 28,324,777 - 28,324,921 ( + ) ; 145 (bp) |
| Exon 13 | Location | 28,325,671 - 28,325,835 ( + ) ; 165 (bp) |
| Exon 14 | Location | 28,325,923 - 28,326,161 ( + ) ; 239 (bp) |
| Exon 15 | Location | 28,326,249 - 28,326,281 ( + ) ; 33 (bp) |
| Exon 16 | Location | 28,326,569 - 28,326,650 ( + ) ; 82 (bp) |
| Exon 17 | Location | 28,326,760 - 28,326,920 ( + ) ; 161 (bp) |
| Exon 18 | Location | 28,327,034 - 28,327,219 ( + ) ; 186 (bp) |
| Exon 19 | Location | 28,327,307 - 28,327,489 ( + ) ; 183 (bp) |
| Exon 20 | Location | 28,327,586 - 28,327,764 ( + ) ; 179 (bp) |
| Exon 21 | Location | 28,328,022 - 28,328,275 ( + ) ; 254 (bp) |
Chromosome: 3 , position: 28,321,140 - 28,328,275 bp |
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| Sequence (Data source : RAP-DB) | |
|---|---|
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Nucleotide
Fasta Format |
000001 tttccatttc ttgccgtttt cttccacatt cttctctgct gctggtgtct cttgtgggcc 000061 gcgtggaaag ccactctctc ctcctctttg acctcgctat ctatccatct actgcagttt 000121 gctcactgga aatgtttttc gcgtataaat agctgggagg agaggcaagg ggaccggaaa 000181 gagtgcgaga aagaaagaaa ggcgagttct ttttggcaag ggagggaggg ggggcactcg 000241 ttgagggtgg gtttcagagg tgtgggaggt cgcctccatg gcggaggaca agggaggcct 000301 cgatgccgtc ctcaaggagt cggtcgactt ggtaacgccc tcatctttgg atgggatggt 000361 tgttcacttg ttcttggggt gttcttgggt ttagcaccgg gggtttcttg ggttttggag 000421 gatgattttt ggcgtggttg tggtttcttg ggatggatgg atggtttttt cagggtggcg 000481 agattggttt cggttcttgc tgttctttgg tttcaaggat ttcagtttca gggtggcctc 000541 ggtttgtggt agagatgatt ggtctctttc acgcgcttct gttgttcgga gggatcttgg 000601 tttctgcatg ttcttggatt tgatggatac ccgtttgttt gttcttgcat gtgtgttagt 000661 agttcgtgga gtcgagtcag agttcagaaa aatgcagatt ttttttgtgt gtgcgcgtgt 000721 gttcgaagtt cttgtttggt tggtgggctg tgcagcaaaa tcggcatgaa ctagttgttt 000781 cttgtgaatt ccagaatgtc aggtgatatt cttggaataa aggttcattt ttttatattc 000841 ggttactgtt cttgtcactc tctgatctct gattattata ttcgacggta ggatatcgtc 000901 tttcccccac atgcagatgt tgactgcttg ctttagtttt ctcgtgtgtg tgtttttttt 000961 actcggttca tatcgtttta tggttatttg catttgaaga ttgattcttg tttattggaa 001021 tctgttacag ttcttggttc cgtggaaatt ggaatcatag gtctcatact tgaatgttga 001081 aaacatattt tattattggt agtcaaatct ttattttgtt tttcttgggt taccatcatg 001141 acaattgcgt gcaggttctg gtaactttct ttgtgccgat ttttttaaga ataaaaaaaa 001201 actaaaattt caattattta caggagaaca tcccgatcga agaagtattc cagaatttga 001261 aatgctgccg acaggggctc acttccgaag aggcgcagct gcgcctgcaa ctttttggtc 001321 cgaacaagct cgaggagaag gaggttgagt tccttcatct catcttgcca ttgctatcaa 001381 agatttacct ttttcttgtt ggaaagtaat actataattc agttcatttg cgttacgttt 001441 ccgcttatgc tgggtcattg atggttgcag gagagcaaat tcctcaagtt cttggggttc 001501 atgtggaatc cgctgtcatg ggtcatggag gctgcagcta tcatggccat tgcattagcc 001561 aatggtgggg taagtactta ggagtcttag acataatgac aaaatctgtt actcctattt 001621 agtacttggc ttctgtcctt ttctctgttg atgaatgcag ggcaactgtg taagtggtcc 001681 cgttcctttt aacaatatat gtggtgttat catcagggga agccaccaga ttggcaggac 001741 tttgttggta tcatcacact gctacttatc aactcaacta tcagtttcat tgaggaaaac 001801 aatgctggca atgctgctgc tgcgctcatg gcgcgtcttg cgccaaaagc caaggtcttt 001861 cttcaatctc cacttttatt atgagatatc cactctattg tccatattga ggtggagcac 001921 ttttgaatat tgaaactcat gttgtgttgg ttgttaggtg ctccgaaatg gtagttggac 001981 tgaggaagag gcagccatcc ttgtgcctgg ggacatcatc agtattaagc tgggagatat 002041 cattcccgca gatgctcgcc tcctggaagg agatcctttg aagattgatc aggttctttc 002101 tgcaattcac attttaaagt cattttcagt ctttaagtaa ttgaggttta ctcatgtcat 002161 gatgtgatct attgttaata gtctgcgctg actggagagt cattgccagc caccaaaggt 002221 cctggtgacg gtgtttactc tggttcaacg gttaagcagg gtgagattga ggctgttgtg 002281 attgcaactg gtgtgcacac tttctttgga aaggctgcac atcttgttga ttccaccaat 002341 caagttggcc atttccaaaa ggcaagattg agaagcctca cttctgttca tgtctcatgt 002401 tgttagccat ctgaataatc aatttatcac tcattcttgc attcattttt atccactttg 002461 tgcaggtttt aacagctatc gggaattttt gcatttgctc aattgctgtg gggatgtttg 002521 ttgagatcat tgtcatgtac cctatccagc acaggccata ccgccctggg attgacaacc 002581 tattggtgct tctcattgga ggcattccta tagcaatgcc cacagtctta tctgtaacca 002641 tggcaatagg gtctcatcgc ttgtctcagc aggtttgtat ctttttaggc acactgttaa 002701 acatagtgta gccataccag aacttctgta ctataatact tgattctgaa ttttatttct 002761 gcagggagct ataacaaaga gaatgactgc aattgaagag atggctggca tggatgttct 002821 ttgcagtgat aaaacaggaa ctctgacttt aaataagctc acagtggaca agaatctcat 002881 tgaggtaaac tcaattattt tttcccttaa tttaaattta attaaagcac ttatttacat 002941 ctttttatcc agatttttga aagaggagtc actcaggacc aagtaattct gatggctgct 003001 agagcatccc gaacagaaaa tcaagatgct attgatactg caatagtcgg gatgctcgct 003061 gatccaaaag aggtacatcg atttgtcaga taggggagga acgactatct tgtttatttg 003121 aggaattaaa caccaggaaa tatttcctgc aggcacgtgc tggtattcaa gaggttcact 003181 tcctgccatt caatccgact gacaagagaa ctgcattgac atacattgat agtgatggaa 003241 agatgtaccg tgttagtaaa ggcgcaccag agcaggtaca acaaaaatca tctgcagata 003301 tgttaaaaaa gctttgctgg aaatttccat ttatatgatg gagttattga ttgatttcat 003361 aaattgacat gcagattctc aacctggcac acaacaagac acagatagaa cgacgagtcc 003421 atgctgtaat tgataagttt gcagaacgtg gacttcgatc acttgctgta gcatatcagg 003481 ttagcacttc ttcggatact ctttgcacaa tttgaatgtt ttaacatttt gagttaatta 003541 agattaggaa ctatccagag tcattatata tgttgaaaaa tcattgttcc ctgggccagt 003601 ttaattttca ttatggtctc ctttccctgt catgtaggaa gttccagatg gaaggaaaga 003661 gagtcctggt gggccatggc gctttgttgc tctccttcca ctctttgatc ctccaaggca 003721 tgatagtgca gaaacaattc gaagggcact taaccttggt gtaaatgtta agatgatcac 003781 aggtactctt ctgattgaaa aaaaaaatct agatggttta tttgttatat atatttttta 003841 ttattctttt ctggtcgttg tggtggtgag agggtactcc atgtccagtt attatatggt 003901 gcatcagtta ctagaatcct aatctactcc atccgtccca aaatataaga gattttgggt 003961 ggatatgaca cttcctagga caatgaatct ggacagagag tcacattcac ccaaaatccc 004021 ttatattttg ggacggaggg agtacaatag gaagaacaac tagcataaat ttgcagtact 004081 gcaatctgtt caataagaaa tgcatgatta tgatgtatca taaagaagaa actcaatttt 004141 catcattaaa aaaaaataaa ccatccattg ctcttctgtc attgtttgga gccatgggga 004201 ccatcaccag ttcaaagctg cagatagtgg tctttgtagc ggttccagtc ttcaccattg 004261 cttatatgta tccatttaca ggtctaactt aatgtttata gagactcttt cttgtttata 004321 taacttattt aaattatttt tgtgaggata atttatattt aattctgatt caacattttt 004381 ttaaaattaa cactgtaaac atgcctaaaa aattgtggta agttgagagt tggtctacca 004441 agtgtcatta ctggatcatg tcatggaaat ttattgcaat tttgttaatc tttctgaatt 004501 atgggaatta aaattatttc tttatcttca ggtgaccaac tagcgattgg gaaagaaaca 004561 gggcgtcgtc taggaatggg tacaaacatg tacccttcat ctgctttgtt gggacagaac 004621 aaggatgagt ctgttgctgc tttaccagtt gacgatctaa tcgagaaagc tgatggtttt 004681 gctggtgtat tcccaggttt gtatgcaatc aattgcagaa taaaaaccaa atggttgaaa 004741 gtcacaaaga aaaatataac tgtgaagttc tctcttttct cagagcacaa gtatgagatt 004801 gtaaaacgtc tgcaagcacg gaagcacatc tgtggaatga ctggtgatgg tgtaaacgat 004861 gctccagccc taaagaaagc tgatattggt atagcagttg ctgatgcgac tgatgcagca 004921 aggagtgcat ctgatattgt actcacagaa cctggcttga gtgtgatcat tagtgctgtt 004981 cttaccagtc gggcgatttt ccagcgaatg aagaactaca ctgtaagtca gatggaaaca 005041 aacatagtgt cttttaatat tctgcctttt tccttgggtt attttgctaa ttcatttcca 005101 tgtttgcaga tatatgctgt ctcgattaca atacgtattg tggtatgttt tctttactgg 005161 agaactagaa attatggatt tcctctcatt tggtaaataa atagttgatt gttctcgtag 005221 gtattttagt ttaactacag gtcaatcaga actaaccatt cagataaatt taacagaact 005281 aagcactaaa tgattccagt gtataacctt ttgtacacat taactttgat gatccccaat 005341 atgatgtttt catcttacta tgccaaacaa tgtgtatcaa ctttatgttt tagctagcac 005401 ttaatgtata ttgactgctc ttttgacagt ttgggtttat gctgcttgcc cttatatggg 005461 agtttgattt cccgccattt atggttctga tcattgcaat tctgaatgat ggtatgtcac 005521 attcttgttc cctccatccc tgctatctct cctaaaactt cagtagtaag tagaaactat 005581 tttcatgatg ttcacttcaa ccattttctg gcacaaacag gtaccataat gactatatct 005641 aaggatctag taaagccttc tccactacct gacagctgga agttggctga aattttcaca 005701 actggagttg tgctgggtgg atacttggca atgatgactg ttatattctt ctgggctgca 005761 tacaagacca actttttccc tgtaagaagt gccaaaaaat gataacaaat ggttctaatt 005821 gaactgttgg cctaccacat tttgtgattg attcttgtat tcgctttgaa acttaatgtt 005881 gcattgattt tcagaggatc tttcacgtcg aaagccttga gaagacagct caagatgact 005941 accaaaagct tgcatctgct gtatatcttc aagttagcac catcagccaa gctcttatct 006001 ttgtcacaag gtctcgcagc tggtcattta tcgaacgccc tggctttcta cttgtctttg 006061 ctttcttcgt tgcacagctg gtatgctctc tccctattac cgcaaactga taaattctct 006121 tctgggtaga attgtgttaa tctaactttc ttccccttca aatgcagata gctacattga 006181 tagctgttta tgctaactgg gcattcactt caatcaaagg cattggatgg ggctgggccg 006241 gtatcgtgtg gctctacaat ctcgttttct acttcccgct cgatatcatc aagttcctca 006301 tccgatatgc tctgagtggg aaagcatggg atcttgtcat tgagcagaga gtaatgctaa 006361 tgcaccctgc atagttgtct tggctcctta cctatttcga ctgaatttcc atgcatttgt 006421 gactaatggc ccatcgattt cgacagattg cgtttacaag gaagaaggat tttggcaagg 006481 aagagaggga actcaagtgg gcacatgcac ataggacact ccatggcctg cagccaccgg 006541 atgcgaagcc cttcccagag aagaccggct acagtgagct gaatcagatg gcggaagagg 006601 cgaaacggag ggccgagatt gcaaggtagg acctaaatct gcagtagaca cttgtataat 006661 tcttttccat gatctgtcac cttaagaatc atatagaagc accatgtcct ttatattgca 006721 tcaattctca gttgcttttg ccatgttcct tccaagatca agaagcatct ccctttctag 006781 ctgcacaatg ccaatttgca tccccctgga acacgtggcg tgaaaacgat gtaaagctaa 006841 ctaactatgt gcttgttctt gctgttgatg ctacacttgc aggctcaggg agcttcatac 006901 gctgaagggg catgtggagt cagttgtgaa gctgaagggc ctggacattg ataccattca 006961 ccagtcctac acagtgtgat agactcttat ctaacaagag taatatggtt gctgcagagg 007021 aactgtttcg tttcatctaa ttagtagttt ttatctcctc tcagctaaca taaatgtaat 007081 caaccaacag ttcatacaat ctataaatca aatcatcaaa ggggattgtt gagatt |
Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.
| Hit Barley ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| AK251199 | FLbaf106f05 | 3395 |
| more... (Total Hit Count: 11 ) | ||
| Hit Wheat ESTs | ||
|---|---|---|
| Acc. No. | Clone Name | Length |
| CJ577789 | rwhpc16n20 | 771 |
| more... (Total Hit Count: 70 ) | ||
