cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA

General information
RAP - Accession No. AK068484     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0626700 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 24,681,209 -  24,687,283  ( - );   6,075(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 24,681,209 -  24,681,610 ( - );   402 (bp)
Exon 2 Location 24,681,752 -  24,681,838 ( - );   87 (bp)
Exon 3 Location 24,681,951 -  24,682,069 ( - );   119 (bp)
Exon 4 Location 24,682,248 -  24,682,486 ( - );   239 (bp)
Exon 5 Location 24,682,882 -  24,682,938 ( - );   57 (bp)
Exon 6 Location 24,683,043 -  24,683,129 ( - );   87 (bp)
Exon 7 Location 24,683,556 -  24,684,097 ( - );   542 (bp)
Exon 8 Location 24,686,903 -  24,687,283 ( - );   381 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No
KOME
Clone ID
KOME
Clone Name
KOME
Cluster ID
MSU ID cDNA
Accession No
RiceXPro
FeatureNum
Genomic Nucleotide
Accession No
Genomic
Nucleotide GI
Genomic Protein
Accession No
Genomic
Protein GI
RefSeq Genomic
Nucleotide
Accession No
RefSeq Genomic
Nucleotide GI
RefSeq RNA
Nucleotide
Accession No
RefSeq RNA
Nucleotide GI
RefSeq Genomic Protein
Accession No
RefSeq Genomic
Protein GI
Os03g0626700 Os03t0626700-01 J013153I24 204112 J013153I24 3746 LOC_Os03g42830.1 AK068484 2401 AP008209.2 255674134 BAF12617.1 113549174 NC_008396.2 297602023 NM_001057238.1 115454204 NP_001050703.1 115454205


Chromosome: 3 ,  position: 24,681,209 - 24,687,283 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format
000001 ctcaatgcta gctaaaccat agctagcttg cctacctcct cctcttcttc ttcttcttct 
000061 tcaaaagctt cttcagagtg gtggcgatat cgactacaca ctgttcttgg ctacatcgat 
000121 tgattgatca gagagagata taacgatatc gatcggatca gttaaataga gtaattgatc 
000181 gatatgggga agctggtgag caagagctgg caggagtcga agctgctgtg gcacatcgcg 
000241 ttcccggcca tcctgacggc cgtcttccag ttctccatcg gcttcgtcac cgtcggcttc 
000301 gtgggccaca tcggccaggt cgagctcgcc gccgtcaccg tcgtcgagaa cgtcatcgag 
000361 ggcttcgcct acggtgtcct ggtacgtata tatactcaat acgcgcaacc tcatcgcaca 
000421 caaactgagg actcatcatc tctcctctcc tcttccatta attgctaact tttgatcacc 
000481 atcacatata tactttgcag cacacatgtt agttactgtg tttgtacgaa atgcatgttc 
000541 attaattcag aacatcttat tagatttgca tcgagctagc taaccctctt aaaagttcag 
000601 acagttaata cagaggaggt aataagctta ttatattagt gctgcttcca gctacaagtt 
000661 catatgtaaa ttagtacggc tgtgttcttt ccctcatttt ccaaacccac ctatgttgtt 
000721 ttccgtacgt acgcttttca aactgctaaa ttatatgatt tatgcaaaaa aaaaaacttt 
000781 ctatataaaa gttgttttaa aaaatcatat taatccatat tttaaaaaaa atagttaata 
000841 cttaattaat tatgcaataa tacgggagga ggggtctctc ctcccgaaga cagcctaatt 
000901 gtttaacacc acaaaaacgt tgaaaaatcc actcaacttg cttaattggt aaagtttgtc 
000961 acagttagct agctagcata ttaattcctc tatagttggt acgtgcactt gtgcgaggaa 
001021 ttagattcgg ctagcttgca tgtttttttc tcaaaaactc ttctccttgc caccatttcg 
001081 ttcaaaacaa aagcactttt aaaattaaat tggaatattt atttggagcg aacctgtgaa 
001141 tgaaatacat atgtatatat agctggctaa gcatatagca ctacctaaat taataagtaa 
001201 attaagcagg ccataattaa cgagccgagc taaaccatgc gacaaagggt ggtttgcacg 
001261 tctccatctg catctgcccc ggctgtaatc tacaccatca atttgtttcc ttcaattaat 
001321 tggaggattt caattcgatc catcatatcc atgcgtcatg catgcatccg gattaagcag 
001381 ctagcagaaa cgaatttgcc aagaaaatta ataagctcga tcagctacaa aatatggagt 
001441 acagctaaac aaaaacaatt taatgaatcg attaatcaac ggctaatata tcgattgatg 
001501 tgtactgatg accactttta gttcgattct agctagtagc aagcaagtct agcttgttaa 
001561 gtacttatgc ctttatatgg ggccatgtcg aatataggcg tacaactaaa gaaacattag 
001621 ttagttaatt aatacatgtc acggtgcttt aacttaatta taatcttcat ccacgaacgt 
001681 ttgtacgtac ggcatactac acgttgaact ggcattataa tctttgcctt ttccgacaca 
001741 tgtacgctag tgattaattt tgtggttttg ggaaagggac tagggatcac atgcacaaat 
001801 taaaggtgaa taaagcaatt caagctaatt gatttaccaa ccaacaacca gatagatgct 
001861 ttagctagcg tgggcaatca gaaaaccacg caaattaagg accatcaaat aatgcctggt 
001921 tgaagatttg ccatctcatt ctctaaaatg atgatgatca tcacttcccg gaagctggta 
001981 gaagctagca ccaatactgc aactaaccat gtacgtacac acgtacacga ttcttcccac 
002041 tatcgttcca tctctatata tatacccctc tctctatcgc gcgtctctta tttatctatc 
002101 tctctccgtt caaaaataat tataagtatt cgtgaacggt acggtgtgcg tgtcgagatt 
002161 gtgcaccgat cacatcatgg taaattcttc ccactgtcga tctatctata tatatccttc 
002221 tcttagcaca acgatgtgtc gcgtgtctct tatttgtcta tctgtctctc tctctctatt 
002281 cgtaaataac tgtaagtatt cacgaacggt atacgtgtgt caagattgtg caccgatcac 
002341 atgtaataga ttgtagcgag ttaatataca tggttattga gaacttgagg atgactggat 
002401 gatcgatata gctaggtagc tagacaagta gctacagcta ggccaaacat ttgttccggc 
002461 agtggatgga gctaggtgat cgatcgagat tgagtgttga ccgaatgggc gtagtaggag 
002521 taggacatgg atggatggat cgatggcgac gatcgatgga ggcgtctcga cacgtacgac 
002581 gtcgagcaaa ccaaacccaa ttcaaccaaa ccaaacccat tttggtattt agctagctag 
002641 ctctcgatcg ctttcttttt agattagtag atttgttcga ccgtctccga atcacgccat 
002701 ttcgatagat gctccacttg cacggccggc cgatgatttt tgtaggcacc aaatcctatt 
002761 cctatactta cttgttgttc cctcggatca agttctattt tgttagtacg acgggaaaag 
002821 aacattattt taattaattc agtggttttc ttcttggttc atcatgtact caacaaattt 
002881 ctgctgattc tatgaaactg gattatatat ggagaaaaca atgggaaaaa ggtaaaagaa 
002941 taactcccaa aacatgaact gatcataagt aaaataataa tgagcatata aaagtatcaa 
003001 accaagtatg ctgggtaatt ttatcattct tgagaaggta ttggaatata ccatattttc 
003061 tagtgtaaaa tttggtccct ccatgtacta actactttaa gataccaaaa attttattgt 
003121 aaaaatttag atatctcgag atactttcta acagactata aaatttctca tctatgctac 
003181 atacagctag gcatggggag tgcgttggag acgttgtgcg ggcaggcggt gggtgctggg 
003241 caggtgtcca tgctaggcgt ctacatccaa cgctcatgga tcatctgtgg cgccaccgct 
003301 gtcatcctca ccccgaccta cgtcttcacc gccggcatcc tcatagggct tcgccagccc 
003361 accgacatcg ccgccgttgc cggcacctac acccgttggg tcatcccgca gctcttcgcc 
003421 tacgctgcca acttccctct ccagaagttc tttcaatcgc agagcaaggt gtgggccatg 
003481 acggccatct ccggcatcgc cctggcgctc cacgttgtgc tcaactacat cttcctcacc 
003541 cgcctcggcc acggcctcgt cgccgccgct ctcatcggca atgtcacctg gtggctcatc 
003601 attctcgccc agttcatcta cctcgtctcc ggctgcttcc cggaggcttg gaaggggttc 
003661 tccatgctcg ccttcaagaa cctcgccgcc ttcgtcaagc tctcgctcgc ctccgccatc 
003721 atgctctggt aatcattcct ggatccggtc gttttcattt acttttgaca attttgacca 
003781 attaatgcac acatagggtg gcaattacct tttgaaaata gaatgaccaa aatatacacc 
003841 tcttgataaa cccttgttta aataaaaaga aaaaaaatct aaatgcaata tttggcggta 
003901 ttatttcttc tgtagcaagt gttcaaattt tgatttgagc caacattaag ctagattctt 
003961 cggtggacag ccacaagggc aaaataggaa attgtgcatt tgaaaaggtg gaagaaaatt 
004021 ttagtcaaag ttgacaaaat tatgcaaacg gatggagtaa ctaatttgct acacctaatc 
004081 atatatgctt gcgtcaccaa ttcaactcac ctaattttga ttatttattt tgatcttgtt 
004141 gatgaaatgg ttagcttgga gctttggtac tacacagcag tgctcatcct tgtcggcctc 
004201 ctaaaggatg ccaaactcca ggttgacgtc atgtctgtct ggtatgtgac gaatttcacc 
004261 aactcccttt tataactaat ttctatatag tatatatata tgtgtgtctt tgcatataat 
004321 taattaatcc gatgaaaatt tgcagcatca attaccagct ctggaccttg atggttgcac 
004381 tgggcttcaa tgcagcagtg aggtaatcaa taatctacca ccattctagc taattactcc 
004441 ctccatctat ttttgatagg catattttca aatctgaaaa ttttattttt aataggcata 
004501 tttcaatcca acgacctatc atcttaatga cttttttttg gatttaatgc gtaactctct 
004561 attcttctac acaagattgg caacataggc atcgaaaaat ataaatatta atgaatcgat 
004621 tgtttacgaa gaatgactag tagcatgttt aaatagatga taagtacaat tacttatcct 
004681 tggtctgtgt gccaagatga aatatgacta tgaaaagtag atggagggag taattactga 
004741 acaattaact aaattgacgc tgattaatta ctgcttcaat tcataatata tgcacagcgt 
004801 gagggtgtcg aacgagctgg gcgcgaaccg gccgaaggcg gccaagttcg cggtggcgat 
004861 ggcggtgtcg acgtcggcga tcgtcggcgc cgttttcatg gccgtgttct tcatttggag 
004921 gacgcagctg ccgcgcttct tcagcgacga cgccgacgtg gtccgtgagt ccgccaagct 
004981 cggctacctc ctcgccgcaa ccatcttcct caacagcatc cagcccgtcc tctctggtaa 
005041 attaattaaa ttcctttcat tttatcaact taattatcat tagtggaaat tacttgatcg 
005101 accgatcatt cattcgagac acattgtttt ttttattatt attttggatt tttagctgga 
005161 gaagcagttg atatctgaac aattagataa ttttgggtgg tctgaatttt gcaggtgtgg 
005221 cgataggagc agggtggcaa tcactcgtgg cgttcataaa cataggctgc tactacctgg 
005281 ttggcatccc actgggtgtc ctctttggct tcaagctgaa gctcgatgca atggtaatat 
005341 atagcacaag ttcaatccgc acaaattaat ctgaattagt aatgcacata tatattctgc 
005401 agcacaacta tatattgata tgatttgcta ctatttattt tgcaggggat ttgggtgggt 
005461 atgtcacttg gcacgctgct tcagacagcc atactggcct tcatttcctt caggacaaaa 
005521 tgggagagac aggtgagtta acagctatct cctcttctga ttaagctaaa taattaactc 
005581 tgaacacatc actgtcaggc taagttggag agttcccttg aagattaatc tgaaataagt 
005641 taactgacaa agctgtaaat atatattttt caggccatga tggctgagga gaggatcaga 
005701 gagtggggag ggaggaacga cgacgcgctg ccgtccacga cgacgccgac ggctgatgat 
005761 cataacgtag atagatgatg atgagatcag atggttaatt attccttcaa attaattaaa 
005821 cttgcagtta aatagtggag ttatttatac acacatcaca aaagctgagt aggcttgtag 
005881 aattattttg tacagattca tatatggtct atgtagagag agaagctcgg tttttatagg 
005941 tgctaaacct cagcttgaat ttcgttttgt cttgccttcc ttttcttcca ttttggttgg 
006001 aagatgatca gctggaaatt attgtactac tgaggttcat tttcacattg aggtgatttt 
006061 ttgagctccg taatt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs  
Acc. No. Clone Name Length
BY845161 bart15e11 531 view details
Hit Wheat ESTs  
Acc. No. Clone Name Length
CJ713096 whva17a21 586 view details
/rice/oryzabase