cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK067755     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0129300 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 1,661,304 -  1,664,489  ( + ) ;   3,186(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 1,661,304 -  1,661,435 ( + ) ;   132 (bp)
Exon 2 Location 1,661,517 -  1,661,627 ( + ) ;   111 (bp)
Exon 3 Location 1,662,474 -  1,662,635 ( + ) ;   162 (bp)
Exon 4 Location 1,662,750 -  1,662,917 ( + ) ;   168 (bp)
Exon 5 Location 1,663,000 -  1,663,160 ( + ) ;   161 (bp)
Exon 6 Location 1,663,247 -  1,663,308 ( + ) ;   62 (bp)
Exon 7 Location 1,663,395 -  1,663,444 ( + ) ;   50 (bp)
Exon 8 Location 1,663,564 -  1,663,970 ( + ) ;   407 (bp)
Exon 9 Location 1,664,077 -  1,664,489 ( + ) ;   413 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0129300 Os03t0129300-01 203306 J013118G18 3038 LOC_Os03g03720.1 AK067755 35812 AP008209.2 255674134 BAF10761.1 113547318 NC_008396.2 297602023 NM_001055382.1 115450492 NP_001048847.1 115450493
Os03g0129300 Os03t0129300-01 203306 J013118G18 3038 LOC_Os03g03720.2 AK067755 35812 AP008209.2 255674134 BAF10761.1 113547318 NC_008396.2 297602023 NM_001055382.1 115450492 NP_001048847.1 115450493


Chromosome: 3 ,  position: 1,661,304 - 1,664,489 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 atccagccga gcgagctaag gaaggaagaa gcatacaggc ggcagcgacg agccatggcc 
000061 acacacgcag cgctcgcggc gtcccgcatt ccggccaccg cccggctgca cagcaaggcg 
000121 gcgtccaagc aggtgcgcgc gtgcgtgatc ttgtggtatt atccggcttt gcgtgtgaag 
000181 ctacgggtga tctgatgaaa tgtgcggttg cagagggtgg acttcgccga cttctccgga 
000241 ctgaggccgg gatcgtgctc catcagccac gccgcgaggg aggcgtcctt ctccgatgtc 
000301 cttggctcgc agctcgtcgc cagggtacgt gcctgtgctt agcttagcta acaaattgat 
000361 ctgtagcttt ctgtttttcc ttttacctgt gcacaattca gtatttcaga taacaaactg 
000421 tagaatttac cacgcacgtt agtatgacta cagtttaacc tgatgagtaa cgtaagatgg 
000481 tcccttttgg ctatggaaaa cagtagtaat cgttgtacat aaataaatac agagttttcg 
000541 ttacttgttt tttttttagc aaaagtattt atactgctat tatatgttac aaacttctgg 
000601 aaattcaata gttgggttct ttttaaaaaa caaaaaatgt agtataaacg caaacgctca 
000661 cagcgtgtgt agataagaca aaataatcac cttattaata gccgtttttg tgaaataaca 
000721 gcgacatgtt gcgtgcttct tcactagatg gatgaaactt tatctttgct ggtagatcac 
000781 acatgattta catctctagt ctcttatgtt ggacacaacc aatgagtttt tatacttact 
000841 ccatcaatct ctagtacatg aatctgaatc gaaaatatct tatattttgg aatagatgaa 
000901 atagaaaata agacatgagc tatattggga caaaccacaa cttcaaacgg tcaaaaattg 
000961 cataggacat tatcctagtt actaatattc cgtgcgtgta ttacagtact aggtagataa 
001021 atgttccagt atcatgcact caagactata atgacaagtt ggtcaagtta tcgtttttgg 
001081 atgcctcgcc aaccacaata tcatgtattg tacagacgtg tattctgact gtaagcgcaa 
001141 gtcctgaatg aattgttcaa cctgtggcag gctaccggag agaacgccgt gagggcgccg 
001201 gctgaggcga agctcaaggt tgccatcaac ggcttcggcc gcattggccg caacttcctc 
001261 cggtgctggc acgaacgcga gaactccccg ctcgaggtcg tcgtcgtcaa cgacagcgga 
001321 ggcgtcagga acgtaagtac aagtactcat ccttcagaaa agcttgtcct gaacgtaatc 
001381 aagcacagac taatcaatga ctgattccga tataattttg ttctctgcgt gtgttaatta 
001441 tttcaggcat cacaccttct caagtacgac tcgatgctcg gcaccttcaa ggccgacgtc 
001501 aagatcgtcg acgaccagac catcagcgtc gacggcaagc tgatcaaggt cgtctccaac 
001561 agggaccccc tcaagctgcc atgggctgag ctcggcatcg acattgtcat cgaggtacac 
001621 aaatcgacaa ttgactgtga actcaatctg cagggaacag aactgacaat gctgcattgc 
001681 tgtgtgtgtc atgaagggta ccggagtgtt cgtcgacggc cccggcgccg ggaagcacat 
001741 ccaggccggc gcgaagaagg tcatcatcac tgctccggcg aagggtgctg acatccctac 
001801 ctacgtcctc ggtgtcaacg agggagacta ctcccacgaa gtggccaaca ttatcaggta 
001861 agcaaaagca aacaccacca cttcaatata tatgcatatc aaactctgca acatgcataa 
001921 gaactctgtt tcttgtgttg cagcaatgct tcctgcacaa ccaactgcct cgctccgttc 
001981 gtcaagatct tggacgaaga gttcggtaag aactttaatc gctcgcctta acctgaagca 
002041 caatacgtat ggcaacatgt gtttcctgac tgtgttgtga cgcatgtgca ggaatcgtaa 
002101 agggaaccat gaccacaact cactcctaca ccggcgacca ggtcggtcgg ttttctgatc 
002161 aaaacgagta aattgattga tcgatgatcg ctgcagcatt tcgtacgtgc agaggctgat 
002221 acattctgcg tgtgctgtgt ttgatgattg actaacacag aggttgctgg acgcgtcgca 
002281 ccgtgacctg aggagggccc gggcggcggc gctgaacatc gtgccgacga gcaccggcgc 
002341 cgcgaaggcc gtggcgctgg tgctcccgca gctgaagggg aagctcaacg gcatcgcgct 
002401 gcgcgtgccg accccgaacg tgtccgtggt ggacctggtg atcaacaccg tgaagaccgg 
002461 catcaccgcc gacgacgtga acgccgcgtt ccgcaaggcc gcggcggggc cactcagcgg 
002521 catcctcgac gtctgcgacg tgccgctggt gtccgtcgac ttccgctgct ccgacgtctc 
002581 ctccaccatc gacgcctcgc tcaccatggt catgggcgac gacatggtca aggtggtcgc 
002641 ctggtacgac aacgagtggg gctacaggtg agagcaatca gcaatgcaaa caaacaacac 
002701 atgttactgc gtgcgttgca attgcattgc tcggcgtctg atcgatcgtg tattcgtgtg 
002761 cggttttgtg cagccaacgc gtggtcgatc tggcgcatct ggtggcgagc aagtggcccg 
002821 gcgcggcggt gcagggcagc ggcgacccac tggaggactt ctgcaaggac aacccggaga 
002881 ccgacgagtg caaagtgtac gaaaactaag accactgtcc aagtacgggc tcgcgtaggt 
002941 gcagaaatat atactcctat aatgtaacga agcacacaca ttgactgtcc ccgggcagaa 
003001 ctgctatact atatatactg tgctcggatt ggctgcccgt acgttgttcc ccttcgacag 
003061 aggaacgcat gactgtcgaa gaagaaacac agctgcagac acgggccatt ttctgtgagg 
003121 tgtaatactg aactttggta cagacttcag gatttttttc ttttcgagtc ttgttttact 
003181 ttcttc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK248197 FLbaf137n16 1646
more... (Total Hit Count: 294 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ716407 whvd12c21 806
more... (Total Hit Count: 256 )
/rice/oryzabase